Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004452

Physical Location & Seq

Genomic Coordinates Reverse (-)

29020028 .. 29023223

Gene Structure 3196 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G303600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGTCAAAACCATTAGAGAGATACCAAAAACTTGGCTTGAAAGAGTCTTTACCAAGAATTCACAGGTACCCGTTAGCCTGTAAGGAGCTGAGCTTTATTCTCAGAGGCGCTTACAAGAAAATTCCCAAGAATCTTCAATCGCTCATCTTCCAGGACACCCTCACCGCCTTTCGTCTCCTCCCTGAAATGCAGACACGCAATGCTGTTTTGGCAGCCCATCTCCTCCTTCAGAGCGTCGAGGCCACGTTGCCAAAGCAAAAGAAGAATGCAGCTGTTACAGAATATAAGAATGCAATGGTTGCTCATAAGAGGCGCACTAAAGCCCGCCAAGAAGAAAACGTTTCAGGTTCAACCCAGCTGCCACAAGATGTTCTTGTTCACATATTCAGTTTCCTCGATATGCAATCTTTAGTCTCTGTTGGACGAGTCTGCTGGTTGTGGAATATAGCGGCAAGTGAGAACAATTTGTGGCAGGCACAATACACTACTTTCTTCGGGAATTCTGATAATGATGCGATGATTAAGGGTCGACAGATTGGTAGACTGGTTGAAGATGAAGGGGGGTATACACTATTTTGGCGAGAAGCCTTCAAACGAGCATATTTAGGTAGTTCTTCAAAGAAATTGAAATCCAGTAGGGGATACTGTAGGGACTGCAACACGATTGTTTGGCTCGATAACATGAAATGTTCAAATGAACATACAGGACTAAATTCTGAAAATCAGCAAATTAAGCCGGTGTTACCCAGTCAGGTGGTTGGGTATCTCTTGGATGATTCTTTATCAATGGCATCTTCTTCAGACAGTGATAGTGATTCAGATGGAGGGCCATTTTCCAGGTTATGGGCCTACCAAAGACCCTTGAGCAAAACCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

293

Amino Acids

33.15

Weight (kDa)

9.41

Isoelectric Point (pI)

48.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52880
fragaria_vesca	FvH4_7g30600 FvH4_7g30600
malus_domestica	MD01G1211200.v1.1
prunus_persica	Prupe.2G291600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G304000_v2.0.a1
pyrus_communis	pycom01g22170
rosa_chinensis	RchiOBHm_Chr1g0378761 RchiOBHm_Chr1g0379101 RchiOBHm_Chr1g0379281 RchiOBHm_Chr1g0379501 RchiOBHm_Chr1g0379511
rosa_laevigata	RLG00000026397
rosa_multiflora	Rmu_sc0031430.1_g000003 Rmu_sc0031430.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280130 Rroxscaffold_4G00280150
rosa_rugosa	Rorug01G0412300 Rorug01G0412400
rosa_samantha	Rh1AG434800 Rh1AG435100 Rh1BG392600 Rh1CG405300 Rh1DG423400
rosa_wichuraiana	Rw1G038010 Rw1G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	66
AccB1I	GGYRCC	1 cut(s)	66
AccB7I	CCANNNNNTGG	1 cut(s)	843
AccI	GTMKAC	3 cut(s)	529, 541, 566
AciI	CCGC	3 cut(s)	165, 325, 449
AclI	AACGTT	1 cut(s)	339
AcsI	RAATTY	4 cut(s)	57, 120, 499, 712
AcuI	CTGAAG	2 cut(s)	212, 783
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	843
AgsI	TTSAA	8 cut(s)	40, 137, 351, 551, 592, 618, 628, 693
AjnI	CCWGG	2 cut(s)	150, 836
AluBI	AGCT	4 cut(s)	88, 93, 272, 358
AluI	AGCT	4 cut(s)	88, 93, 272, 358
Alw26I	GTCTC	2 cut(s)	179, 418
AoxI	GGCC	3 cut(s)	240, 827, 846
ApeKI	GCWGC	3 cut(s)	212, 269, 358
ApoI	RAATTY	4 cut(s)	57, 120, 499, 712
Asp718I	GGTACC	1 cut(s)	66
AspLEI	GCGC	2 cut(s)	110, 315
AspS9I	GGNCC	2 cut(s)	827, 846
AsuHPI	GGTGA	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	66
BbvI	GCAGC	3 cut(s)	224, 281, 345
BccI	CCATC	2 cut(s)	225, 815
BciT130I	CCWGG	2 cut(s)	152, 838
BciVI	GTATCC	1 cut(s)	635
BcoDI	GTCTC	2 cut(s)	179, 418
BfmI	CTRYAG	1 cut(s)	646
BfoI	RGCGCY	1 cut(s)	111
BfuI	GTATCC	1 cut(s)	635
BisI	GCNGC	4 cut(s)	213, 270, 359, 450
BlpI	GCTNAGC	1 cut(s)	89
BlsI	GCNGC	4 cut(s)	214, 271, 360, 451
Bme1390I	CCNGG	2 cut(s)	152, 838
BmgT120I	GGNCC	2 cut(s)	827, 846
BmiI	GGNNCC	1 cut(s)	68
BmrFI	CCNGG	2 cut(s)	152, 838
BmrI	ACTGGG	2 cut(s)	741, 868
BmsI	GCATC	2 cut(s)	502, 800
BmuI	ACTGGG	2 cut(s)	741, 868
Bpu1102I	GCTNAGC	1 cut(s)	89
Bsc4I	CCNNNNNNNGG	1 cut(s)	843
Bse118I	RCCGGY	1 cut(s)	736
Bse1I	ACTGG	4 cut(s)	549, 633, 747, 874
Bse3DI	GCAATG	2 cut(s)	205, 300
BseBI	CCWGG	2 cut(s)	152, 838
BseGI	GGATG	1 cut(s)	778
BseLI	CCNNNNNNNGG	1 cut(s)	843
BseMI	GCAATG	2 cut(s)	205, 300
BseMII	CTCAG	2 cut(s)	80, 115
BseNI	ACTGG	4 cut(s)	549, 633, 747, 874
BseRI	GAGGAG	2 cut(s)	167, 212
BseXI	GCAGC	3 cut(s)	224, 281, 345
BseYI	CCCAGC	1 cut(s)	354
BshFI	GGCC	3 cut(s)	242, 829, 848
BshNI	GGYRCC	1 cut(s)	66
BsiSI	CCGG	1 cut(s)	737
BslFI	GGGAC	1 cut(s)	665
BslI	CCNNNNNNNGG	1 cut(s)	843
BsmAI	GTCTC	2 cut(s)	179, 418
BsmBI	CGTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	665
BsmI	GAATGC	2 cut(s)	271, 295
BsnI	GGCC	3 cut(s)	242, 829, 848
Bsp1720I	GCTNAGC	1 cut(s)	89
BspACI	CCGC	3 cut(s)	165, 325, 449
BspANI	GGCC	3 cut(s)	242, 829, 848
BspCNI	CTCAG	2 cut(s)	81, 114
BspLI	GGNNCC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	66
BsrDI	GCAATG	2 cut(s)	205, 300
BsrFI	RCCGGY	1 cut(s)	736
BsrI	ACTGG	4 cut(s)	549, 633, 747, 874
BssAI	RCCGGY	1 cut(s)	736
BssNAI	GTATAC	1 cut(s)	567
Bst1107I	GTATAC	1 cut(s)	567
Bst2UI	CCWGG	2 cut(s)	152, 838
Bst4CI	ACNGT	2 cut(s)	647, 806
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	325, 474
BstDEI	CTNAG	2 cut(s)	89, 101
BstF5I	GGATG	1 cut(s)	778
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	2 cut(s)	110, 315
BstMAI	GTCTC	2 cut(s)	179, 418
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 299, 733
BstNI	CCWGG	2 cut(s)	152, 838
BstSCI	CCNGG	2 cut(s)	150, 836
BstSFI	CTRYAG	1 cut(s)	646
BstV1I	GCAGC	3 cut(s)	224, 281, 345
BstXI	CCANNNNNNTGG	2 cut(s)	32, 754
BstZ17I	GTATAC	1 cut(s)	567
BsuI	GTATCC	1 cut(s)	635
BsuRI	GGCC	3 cut(s)	242, 829, 848
BtgZI	GCGATG	1 cut(s)	530
BtsCI	GGATG	1 cut(s)	778
BtsIMutI	CAGTG	1 cut(s)	811
Cac8I	GCNNGC	2 cut(s)	325, 474
CfoI	GCGC	2 cut(s)	110, 315
Cfr10I	RCCGGY	1 cut(s)	736
Cfr13I	GGNCC	2 cut(s)	827, 846
CseI	GACGC	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	1 cut(s)	682
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	2 cut(s)	89, 101
Eco57I	CTGAAG	2 cut(s)	212, 783
EcoRI	GAATTC	2 cut(s)	57, 499
EcoRII	CCWGG	2 cut(s)	150, 836
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	1 cut(s)	685
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	1 cut(s)	665
FatI	CATG	1 cut(s)	681
FauI	CCCGC	1 cut(s)	332
FblI	GTMKAC	3 cut(s)	529, 541, 566
Fnu4HI	GCNGC	4 cut(s)	213, 270, 359, 450
FokI	GGATG	1 cut(s)	785
Fsp4HI	GCNGC	4 cut(s)	213, 270, 359, 450
GlaI	GCGC	2 cut(s)	109, 314
GluI	GCNGC	4 cut(s)	213, 270, 359, 450
GsaI	CCCAGC	1 cut(s)	358
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	242, 829, 848
HapII	CCGG	1 cut(s)	737
HgaI	GACGC	1 cut(s)	223
HhaI	GCGC	2 cut(s)	110, 315
Hin1II	CATG	1 cut(s)	685
Hin6I	GCGC	2 cut(s)	108, 313
HinP1I	GCGC	2 cut(s)	108, 313
HincII	GTYRAC	1 cut(s)	530
HindII	GTYRAC	1 cut(s)	530
HinfI	GANTC	5 cut(s)	44, 130, 426, 776, 815
HpaII	CCGG	1 cut(s)	737
HphI	GGTGA	1 cut(s)	154
Hpy166II	GTNNAC	4 cut(s)	379, 530, 542, 567
Hpy188I	TCNGA	6 cut(s)	104, 231, 505, 718, 802, 820
Hpy188III	TCNNGA	1 cut(s)	496
Hpy8I	GTNNAC	4 cut(s)	379, 530, 542, 567
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	3 cut(s)	236, 551, 598
HpyCH4III	ACNGT	2 cut(s)	647, 806
HpyCH4IV	ACGT	2 cut(s)	245, 339
HpyCH4V	TGCA	5 cut(s)	190, 269, 293, 403, 657
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 299, 733
HpyF3I	CTNAG	2 cut(s)	89, 101
HpySE526I	ACGT	2 cut(s)	245, 339
Hsp92II	CATG	1 cut(s)	685
HspAI	GCGC	2 cut(s)	108, 313
KpnI	GGTACC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	85
Lsp1109I	GCAGC	3 cut(s)	224, 281, 345
LweI	GCATC	2 cut(s)	502, 800
MaeII	ACGT	2 cut(s)	245, 339
MaeIII	GTNAC	2 cut(s)	274, 741
MboII	GAAGA	9 cut(s)	125, 139, 274, 344, 484, 563, 606, 786, 789
MluCI	AATT	7 cut(s)	57, 120, 463, 499, 623, 712, 729
MlyI	GAGTC	2 cut(s)	53, 435
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	8 cut(s)	98, 170, 188, 232, 233, 303, 404, 818
MseI	TTAA	2 cut(s)	522, 732
MspA1I	CMGCKG	2 cut(s)	272, 358
MspI	CCGG	1 cut(s)	737
MspR9I	CCNGG	2 cut(s)	152, 838
Mva1269I	GAATGC	2 cut(s)	271, 295
MvaI	CCWGG	2 cut(s)	152, 838
MwoI	GCNNNNNNNGC	3 cut(s)	209, 299, 733
NlaIII	CATG	1 cut(s)	685
NlaIV	GGNNCC	1 cut(s)	68
PctI	GAATGC	2 cut(s)	271, 295
PfeI	GAWTC	3 cut(s)	130, 776, 815
PflMI	CCANNNNNTGG	1 cut(s)	843
PfoI	TCCNGGA	1 cut(s)	150
PkrI	GCNGC	4 cut(s)	214, 271, 360, 451
PleI	GAGTC	2 cut(s)	52, 434
PpsI	GAGTC	2 cut(s)	52, 434
Psp1406I	AACGTT	1 cut(s)	339
Psp6I	CCWGG	2 cut(s)	150, 836
PspFI	CCCAGC	1 cut(s)	354
PspGI	CCWGG	2 cut(s)	150, 836
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	2 cut(s)	827, 846
PvuII	CAGCTG	2 cut(s)	272, 358
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SalI	GTCGAC	1 cut(s)	528
SaqAI	TTAA	2 cut(s)	522, 732
SatI	GCNGC	4 cut(s)	213, 270, 359, 450
Sau96I	GGNCC	2 cut(s)	827, 846
SchI	GAGTC	2 cut(s)	53, 435
ScrFI	CCNGG	2 cut(s)	152, 838
SfaNI	GCATC	2 cut(s)	502, 800
SfcI	CTRYAG	1 cut(s)	646
SmlI	CTYRAG	1 cut(s)	862
SmoI	CTYRAG	1 cut(s)	862
Sse9I	AATT	7 cut(s)	57, 120, 463, 499, 623, 712, 729
SsiI	CCGC	3 cut(s)	165, 325, 449
StyD4I	CCNGG	2 cut(s)	150, 836
TaaI	ACNGT	2 cut(s)	647, 806
TaiI	ACGT	2 cut(s)	248, 342
TaqI	TCGA	4 cut(s)	237, 396, 529, 675
TasI	AATT	7 cut(s)	57, 120, 463, 499, 623, 712, 729
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	3 cut(s)	130, 776, 815
Tru1I	TTAA	2 cut(s)	522, 732
Tru9I	TTAA	2 cut(s)	522, 732
TscAI	CASTG	1 cut(s)	811
TseI	GCWGC	3 cut(s)	212, 269, 358
TspDTI	ATGAA	3 cut(s)	570, 698, 711
TspRI	CASTG	1 cut(s)	811
Van91I	CCANNNNNTGG	1 cut(s)	843
XapI	RAATTY	4 cut(s)	57, 120, 499, 712
XmiI	GTMKAC	3 cut(s)	529, 541, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.