Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004452

Physical Location & Seq

Genomic Coordinates Forward (+)

65368475 .. 65369810

Gene Structure 1336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60263

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGCTATATATAGACTTTTTACAACTATATACCCTTTAGTCTGCAAAGAGCTCAGCTTAATTCTCAGAGGCGCTTACAGAAAAGTGCCCAAGAATCTCCAGTCTCTTATCTTCCAAGATACCCTCACCGCCTTTCGTCTCCTTCCTGAAATGAAGACGCGCAGTGCTGTCTCAGCAGCTCACCTCCTCCTCCAGAGCGTTGAGGCCACTTTGCCGAAGCAAAAGAAGAACTTGGCTGTTACAGAATATAAGAATGCAATGATTGCTCACAAGAGGCGCGCTAAAGCTCGCCAAGAAGAGAATGTTGCCCATCTGCCACAAGATGTTCTTGTACATGTATTCAGTTTCCTGGATTTTCAATCTTTAGTCTCTGTTGGGCAAGTCTGCTGGCCATGGAATTTTGCAGCAAGTGATAACCGGCTGTGGCAGAGGCAATACGCTACGTTCTTTAGGGACTCTTACAATGACTTGAATATCAAGGAACAGCATACCAGTAGACAGGTTGAAGATGATAGTTATACGATGTATTCCTTGCTGGATCTGTTAAAAGTGCATTTTGTCACCGGAGAATCTAAGTTGCAATTTTACCACTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

198

Amino Acids

23.12

Weight (kDa)

9.41

Isoelectric Point (pI)

51.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At5g52880_ARM	PF24104	11 - 92	2.1e-36	F-box protein At5g52880 ARM repeat
F-box-like	PF12937	103 - 146	8.1e-16	F-box-like
F-box	PF00646	104 - 143	1.3e-08	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52880
fragaria_vesca	FvH4_7g30600 FvH4_7g30600
malus_domestica	MD01G1211200.v1.1
prunus_persica	Prupe.2G291600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G304000_v2.0.a1
pyrus_communis	pycom01g22170
rosa_chinensis	RchiOBHm_Chr1g0378761 RchiOBHm_Chr1g0379101 RchiOBHm_Chr1g0379281 RchiOBHm_Chr1g0379501 RchiOBHm_Chr1g0379511
rosa_laevigata	RLG00000026397
rosa_multiflora	Rmu_sc0031430.1_g000003 Rmu_sc0031430.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280130 Rroxscaffold_4G00280150
rosa_rugosa	Rorug01G0412300 Rorug01G0412400
rosa_samantha	Rh1AG434800 Rh1AG435100 Rh1BG392600 Rh1CG405300 Rh1DG423400
rosa_wichuraiana	Rw1G038010 Rw1G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	595
AccI	GTMKAC	1 cut(s)	496
AccII	CGCG	2 cut(s)	160, 279
AciI	CCGC	1 cut(s)	129
AclWI	GGATC	1 cut(s)	546
AcoI	YGGCCR	1 cut(s)	389
AcsI	RAATTY	1 cut(s)	397
AfaI	GTAC	1 cut(s)	333
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	3 cut(s)	359, 472, 506
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	4 cut(s)	52, 57, 179, 287
AluI	AGCT	4 cut(s)	52, 57, 179, 287
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	4 cut(s)	108, 143, 175, 373
AlwI	GGATC	1 cut(s)	546
AoxI	GGCC	2 cut(s)	204, 389
ApeKI	GCWGC	2 cut(s)	176, 404
ApoI	RAATTY	1 cut(s)	397
AspLEI	GCGC	4 cut(s)	74, 162, 279, 281
AsuHPI	GGTGA	3 cut(s)	118, 173, 553
BaeGI	GKGCMC	1 cut(s)	90
BalI	TGGCCA	1 cut(s)	391
BanII	GRGCYC	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	161
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	188, 416
BccI	CCATC	1 cut(s)	318
BciT130I	CCWGG	1 cut(s)	350
BcoDI	GTCTC	4 cut(s)	108, 143, 175, 373
BfoI	RGCGCY	1 cut(s)	75
BisI	GCNGC	2 cut(s)	177, 405
BlpI	GCTNAGC	1 cut(s)	53
BlsI	GCNGC	2 cut(s)	178, 406
Bme1390I	CCNGG	1 cut(s)	350
BmrFI	CCNGG	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	161
BpmI	CTGGAG	2 cut(s)	83, 176
Bpu1102I	GCTNAGC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	392
BsaWI	WCCGGW	1 cut(s)	563
Bse118I	RCCGGY	1 cut(s)	417
Bse1I	ACTGG	2 cut(s)	100, 492
Bse3DI	GCAATG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	392
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	3 cut(s)	67, 79, 186
BseNI	ACTGG	2 cut(s)	100, 492
BsePI	GCGCGC	1 cut(s)	277
BseRI	GAGGAG	2 cut(s)	176, 179
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	2 cut(s)	188, 416
Bsh1236I	CGCG	2 cut(s)	160, 279
BshFI	GGCC	2 cut(s)	206, 391
BsiHKAI	GWGCWC	1 cut(s)	54
BsiSI	CCGG	2 cut(s)	418, 564
BslFI	GGGAC	1 cut(s)	467
BsmAI	GTCTC	4 cut(s)	108, 143, 175, 373
BsmBI	CGTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	467
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	2 cut(s)	206, 391
Bsp1286I	GDGCHC	2 cut(s)	54, 90
Bsp1407I	TGTACA	1 cut(s)	331
Bsp143I	GATC	1 cut(s)	538
Bsp1720I	GCTNAGC	1 cut(s)	53
Bsp19I	CCATGG	1 cut(s)	392
BspACI	CCGC	1 cut(s)	129
BspANI	GGCC	2 cut(s)	206, 391
BspCNI	CTCAG	3 cut(s)	66, 78, 185
BspFNI	CGCG	2 cut(s)	160, 279
BspPI	GGATC	1 cut(s)	546
BsrDI	GCAATG	1 cut(s)	264
BsrFI	RCCGGY	1 cut(s)	417
BsrGI	TGTACA	1 cut(s)	331
BsrI	ACTGG	2 cut(s)	100, 492
BssAI	RCCGGY	1 cut(s)	417
BssECI	CCNNGG	1 cut(s)	392
BssHII	GCGCGC	1 cut(s)	277
BssMI	GATC	1 cut(s)	538
BssT1I	CCWWGG	1 cut(s)	392
Bst2UI	CCWGG	1 cut(s)	350
Bst6I	CTCTTC	1 cut(s)	291
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstAUI	TGTACA	1 cut(s)	331
BstC8I	GCNNGC	3 cut(s)	279, 289, 389
BstDEI	CTNAG	4 cut(s)	53, 65, 172, 573
BstDSI	CCRYGG	1 cut(s)	392
BstFNI	CGCG	2 cut(s)	160, 279
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	4 cut(s)	74, 162, 279, 281
BstKTI	GATC	1 cut(s)	541
BstMAI	GTCTC	4 cut(s)	108, 143, 175, 373
BstMBI	GATC	1 cut(s)	538
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 263
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	348
BstSLI	GKGCMC	1 cut(s)	90
BstUI	CGCG	2 cut(s)	160, 279
BstV1I	GCAGC	2 cut(s)	188, 416
BstV2I	GAAGAC	1 cut(s)	161
BstX2I	RGATCY	1 cut(s)	538
BstYI	RGATCY	1 cut(s)	538
BsuRI	GGCC	2 cut(s)	206, 391
BtgI	CCRYGG	1 cut(s)	392
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	169
Cac8I	GCNNGC	3 cut(s)	279, 289, 389
CfoI	GCGC	4 cut(s)	74, 162, 279, 281
Cfr10I	RCCGGY	1 cut(s)	417
CseI	GACGC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	332
CviAII	CATG	2 cut(s)	335, 393
CviJI	RGCY	9 cut(s)	5, 52, 57, 179, 206, 236, 287, 391, 421
CviKI_1	RGCY	9 cut(s)	5, 52, 57, 179, 206, 236, 287, 391, 421
CviQI	GTAC	1 cut(s)	332
DdeI	CTNAG	4 cut(s)	53, 65, 172, 573
DpnI	GATC	1 cut(s)	540
DpnII	GATC	1 cut(s)	538
EaeI	YGGCCR	1 cut(s)	389
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	54
Eco53kI	GAGCTC	1 cut(s)	52
EcoICRI	GAGCTC	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	392
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	392
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	2 cut(s)	338, 396
FalI	AAGNNNNNCTT	4 cut(s)	215, 247, 312, 344
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	2 cut(s)	334, 392
FblI	GTMKAC	1 cut(s)	496
Fnu4HI	GCNGC	2 cut(s)	177, 405
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	2 cut(s)	177, 405
GlaI	GCGC	4 cut(s)	73, 161, 278, 280
GluI	GCNGC	2 cut(s)	177, 405
GsuI	CTGGAG	2 cut(s)	83, 176
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	206, 391
HapII	CCGG	2 cut(s)	418, 564
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	4 cut(s)	74, 162, 279, 281
Hin1II	CATG	2 cut(s)	338, 396
Hin6I	GCGC	4 cut(s)	72, 160, 277, 279
HinP1I	GCGC	4 cut(s)	72, 160, 277, 279
HinfI	GANTC	3 cut(s)	94, 455, 569
HpaII	CCGG	2 cut(s)	418, 564
HphI	GGTGA	3 cut(s)	118, 173, 553
Hpy166II	GTNNAC	1 cut(s)	497
Hpy188I	TCNGA	1 cut(s)	68
Hpy188III	TCNNGA	2 cut(s)	146, 193
Hpy8I	GTNNAC	1 cut(s)	497
HpyAV	CCTTC	1 cut(s)	152
HpyCH4IV	ACGT	1 cut(s)	443
HpyCH4V	TGCA	5 cut(s)	45, 257, 404, 553, 580
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 263
HpyF3I	CTNAG	4 cut(s)	53, 65, 172, 573
HpySE526I	ACGT	1 cut(s)	443
Hsp92II	CATG	2 cut(s)	338, 396
HspAI	GCGC	4 cut(s)	72, 160, 277, 279
Kzo9I	GATC	1 cut(s)	538
Lsp1109I	GCAGC	2 cut(s)	188, 416
MaeII	ACGT	1 cut(s)	443
MaeIII	GTNAC	2 cut(s)	238, 559
MalI	GATC	1 cut(s)	540
MboI	GATC	1 cut(s)	538
MboII	GAAGA	5 cut(s)	103, 166, 238, 308, 518
MflI	RGATCY	1 cut(s)	538
MhlI	GDGCHC	2 cut(s)	54, 90
MlsI	TGGCCA	1 cut(s)	391
MluCI	AATT	3 cut(s)	60, 397, 581
MluNI	TGGCCA	1 cut(s)	391
MlyI	GAGTC	1 cut(s)	449
MnlI	CCTC	8 cut(s)	62, 134, 194, 196, 197, 200, 267, 423
Mox20I	TGGCCA	1 cut(s)	391
MscI	TGGCCA	1 cut(s)	391
MseI	TTAA	2 cut(s)	59, 545
Msp20I	TGGCCA	1 cut(s)	391
MspI	CCGG	2 cut(s)	418, 564
MspR9I	CCNGG	1 cut(s)	350
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	2 cut(s)	160, 279
MwoI	GCNNNNNNNGC	2 cut(s)	173, 263
NcoI	CCATGG	1 cut(s)	392
NdeII	GATC	1 cut(s)	538
NlaIII	CATG	2 cut(s)	338, 396
NmuCI	GTSAC	1 cut(s)	559
NspI	RCATGY	1 cut(s)	338
PauI	GCGCGC	1 cut(s)	277
PciI	ACATGT	1 cut(s)	334
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	94, 569
PfoI	TCCNGGA	1 cut(s)	348
PkrI	GCNGC	2 cut(s)	178, 406
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
PscI	ACATGT	1 cut(s)	334
PsiI	TTATAA	1 cut(s)	595
Psp124BI	GAGCTC	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	538
PteI	GCGCGC	1 cut(s)	277
RsaI	GTAC	1 cut(s)	333
RsaNI	GTAC	1 cut(s)	332
SacI	GAGCTC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	59, 545
SatI	GCNGC	2 cut(s)	177, 405
Sau3AI	GATC	1 cut(s)	538
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	54, 90
SetI	ASST	7 cut(s)	54, 59, 181, 186, 289, 446, 504
Sse9I	AATT	3 cut(s)	60, 397, 581
SsiI	CCGC	1 cut(s)	129
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	392
TaiI	ACGT	1 cut(s)	446
TasI	AATT	3 cut(s)	60, 397, 581
TatI	WGTACW	1 cut(s)	331
TfiI	GAWTC	2 cut(s)	94, 569
Tru1I	TTAA	2 cut(s)	59, 545
Tru9I	TTAA	2 cut(s)	59, 545
TscAI	CASTG	1 cut(s)	169
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	2 cut(s)	176, 404
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	169
XapI	RAATTY	1 cut(s)	397
XceI	RCATGY	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.