Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004452

Physical Location & Seq

Genomic Coordinates Reverse (-)

65582991 .. 65584468

Gene Structure 1478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G038010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAAGACGCGCAGTGCTGTCTCAGCAGCTCACCTCCTCCTCCAGAGCGTTGAGGCCACTTTGCCGAAGCAAAAGAAGAACTTGGCTGTTACAGAATATAAGAATGCAATGATTGCTCACAGGAGGCGCGCTAAAGCTCGCCAAGAAGAGAATGTTGCCCATCTGCCACAAGATGTTCTTGTACATGAATTCAGTTTCCTGGATTTTCAATCTTTAGTCTCTGTTGGGCAAGTCTGCTGGCAATACGCTACGTTCTTTAGGGACTCTTACAATGACTTGAATATCAAGGAACATCATACCAGTAGACAGGTTGAAGATGATAGTTATACGCTGTTTTGGAGAAAAGCCTTCAAAAGAGCATATAAAGGGAGTAATTCATCAAAGAAATTAAAATCCAGTAGGGGATACTGTAGATACTGCAAGACAATTGTTTGTCTCGATAACATGAAATGTTTCAATGACCATATTGGACTAAATCCTGAAATTCAGAAAATTGACCCTGTATCACCTAGTCAGGTGGTTGACTATCTGTTGGAAGATTCTATATCAGTCAAATCTTCTTCAGAGAGCGATAGCGACAGTGATTCAGAAGCAGGGTCAATTTCTAGGTTATGGGCCTATCGAAGACCCTTGACCAGTACTGAAGATATGCCTTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

220

Amino Acids

25.23

Weight (kDa)

8.72

Isoelectric Point (pI)

62.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At5g52880_ARM	PF24104	1 - 42	1e-12	F-box protein At5g52880 ARM repeat
F-box-like	PF12937	53 - 88	4.8e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52880
fragaria_vesca	FvH4_7g30600 FvH4_7g30600
malus_domestica	MD01G1211200.v1.1
prunus_persica	Prupe.2G291600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G304000_v2.0.a1
pyrus_communis	pycom01g22170
rosa_chinensis	RchiOBHm_Chr1g0378761 RchiOBHm_Chr1g0379101 RchiOBHm_Chr1g0379281 RchiOBHm_Chr1g0379501 RchiOBHm_Chr1g0379511
rosa_laevigata	RLG00000026397
rosa_multiflora	Rmu_sc0031430.1_g000003 Rmu_sc0031430.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280130 Rroxscaffold_4G00280150
rosa_rugosa	Rorug01G0412300 Rorug01G0412400
rosa_samantha	Rh1AG434800 Rh1AG435100 Rh1BG392600 Rh1CG405300 Rh1DG423400
rosa_wichuraiana	Rw1G038010 Rw1G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	304
AccII	CGCG	2 cut(s)	10, 129
AcsI	RAATTY	2 cut(s)	188, 483
AcuI	CTGAAG	2 cut(s)	546, 663
AfaI	GTAC	2 cut(s)	183, 640
AgsI	TTSAA	5 cut(s)	209, 280, 314, 352, 457
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	2 cut(s)	29, 137
AluI	AGCT	2 cut(s)	29, 137
Alw26I	GTCTC	3 cut(s)	25, 223, 440
AoxI	GGCC	2 cut(s)	54, 615
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	2 cut(s)	188, 483
Asp700I	GAANNNNTTC	1 cut(s)	452
AspLEI	GCGC	3 cut(s)	12, 129, 131
AspS9I	GGNCC	1 cut(s)	615
AsuHPI	GGTGA	2 cut(s)	23, 498
BbsI	GAAGAC	2 cut(s)	11, 631
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	200
BciVI	GTATCC	1 cut(s)	398
BcoDI	GTCTC	3 cut(s)	25, 223, 440
BfaI	CTAG	2 cut(s)	510, 606
BfmI	CTRYAG	1 cut(s)	409
BfuI	GTATCC	1 cut(s)	398
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
BmcAI	AGTACT	1 cut(s)	640
Bme1390I	CCNGG	1 cut(s)	200
BmgT120I	GGNCC	1 cut(s)	615
BmrFI	CCNGG	1 cut(s)	200
BpiI	GAAGAC	2 cut(s)	11, 631
BpmI	CTGGAG	1 cut(s)	26
Bse1I	ACTGG	3 cut(s)	300, 396, 636
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	200
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	3 cut(s)	300, 396, 636
BsePI	GCGCGC	1 cut(s)	127
BseRI	GAGGAG	2 cut(s)	26, 29
BseXI	GCAGC	1 cut(s)	38
Bsh1236I	CGCG	2 cut(s)	10, 129
BshFI	GGCC	2 cut(s)	56, 617
BslFI	GGGAC	1 cut(s)	275
BsmAI	GTCTC	3 cut(s)	25, 223, 440
BsmFI	GGGAC	1 cut(s)	275
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	56, 617
Bsp1407I	TGTACA	1 cut(s)	181
BspANI	GGCC	2 cut(s)	56, 617
BspCNI	CTCAG	1 cut(s)	35
BspFNI	CGCG	2 cut(s)	10, 129
BsrDI	GCAATG	1 cut(s)	114
BsrGI	TGTACA	1 cut(s)	181
BsrI	ACTGG	3 cut(s)	300, 396, 636
BssHII	GCGCGC	1 cut(s)	127
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	410, 581
Bst6I	CTCTTC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	181
BstC8I	GCNNGC	3 cut(s)	129, 139, 239
BstDEI	CTNAG	1 cut(s)	22
BstFNI	CGCG	2 cut(s)	10, 129
BstHHI	GCGC	3 cut(s)	12, 129, 131
BstMAI	GTCTC	3 cut(s)	25, 223, 440
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 113
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	409
BstUI	CGCG	2 cut(s)	10, 129
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	2 cut(s)	11, 631
BsuI	GTATCC	1 cut(s)	398
BsuRI	GGCC	2 cut(s)	56, 617
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	19, 586
Cac8I	GCNNGC	3 cut(s)	129, 139, 239
CfoI	GCGC	3 cut(s)	12, 129, 131
Cfr13I	GGNCC	1 cut(s)	615
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	182, 639
CviAII	CATG	2 cut(s)	185, 445
CviJI	RGCY	6 cut(s)	29, 56, 86, 137, 347, 617
CviKI_1	RGCY	6 cut(s)	29, 56, 86, 137, 347, 617
CviQI	GTAC	2 cut(s)	182, 639
DdeI	CTNAG	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco57I	CTGAAG	2 cut(s)	546, 663
EcoRI	GAATTC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	198
FaeI	CATG	2 cut(s)	188, 448
FalI	AAGNNNNNCTT	4 cut(s)	65, 97, 162, 194
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	2 cut(s)	184, 444
FblI	GTMKAC	1 cut(s)	304
Fnu4HI	GCNGC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	2 cut(s)	510, 606
GlaI	GCGC	3 cut(s)	11, 128, 130
GluI	GCNGC	1 cut(s)	27
GsuI	CTGGAG	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	56, 617
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	3 cut(s)	12, 129, 131
Hin1II	CATG	2 cut(s)	188, 448
Hin6I	GCGC	3 cut(s)	10, 127, 129
HinP1I	GCGC	3 cut(s)	10, 127, 129
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HinfI	GANTC	3 cut(s)	263, 539, 584
HphI	GGTGA	2 cut(s)	23, 498
Hpy166II	GTNNAC	2 cut(s)	305, 523
Hpy188I	TCNGA	3 cut(s)	489, 565, 589
Hpy188III	TCNNGA	3 cut(s)	43, 437, 479
Hpy8I	GTNNAC	2 cut(s)	305, 523
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	2 cut(s)	410, 581
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	2 cut(s)	107, 420
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 113
HpyF3I	CTNAG	1 cut(s)	22
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	2 cut(s)	188, 448
HspAI	GCGC	3 cut(s)	10, 127, 129
Lsp1109I	GCAGC	1 cut(s)	38
MaeI	CTAG	2 cut(s)	510, 606
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	88
MboII	GAAGA	9 cut(s)	16, 88, 158, 326, 548, 549, 552, 636, 656
MfeI	CAATTG	1 cut(s)	426
MluCI	AATT	7 cut(s)	188, 373, 386, 426, 483, 492, 600
MlyI	GAGTC	1 cut(s)	257
MmeI	TCCRAC	1 cut(s)	513
MnlI	CCTC	5 cut(s)	44, 46, 47, 50, 117
MroXI	GAANNNNTTC	1 cut(s)	452
MseI	TTAA	1 cut(s)	389
MspR9I	CCNGG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	2 cut(s)	10, 129
MwoI	GCNNNNNNNGC	2 cut(s)	23, 113
NlaIII	CATG	2 cut(s)	188, 448
PauI	GCGCGC	1 cut(s)	127
PctI	GAATGC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	2 cut(s)	539, 584
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	1 cut(s)	28
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspPI	GGNCC	1 cut(s)	615
PteI	GCGCGC	1 cut(s)	127
RsaI	GTAC	2 cut(s)	183, 640
RsaNI	GTAC	2 cut(s)	182, 639
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	1 cut(s)	27
Sau96I	GGNCC	1 cut(s)	615
ScaI	AGTACT	1 cut(s)	640
SchI	GAGTC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	200
SetI	ASST	8 cut(s)	31, 36, 139, 254, 312, 511, 519, 611
SfcI	CTRYAG	1 cut(s)	409
Sse9I	AATT	7 cut(s)	188, 373, 386, 426, 483, 492, 600
SspMI	CTAG	2 cut(s)	510, 606
StyD4I	CCNGG	1 cut(s)	198
TaaI	ACNGT	2 cut(s)	410, 581
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	2 cut(s)	438, 622
TasI	AATT	7 cut(s)	188, 373, 386, 426, 483, 492, 600
TatI	WGTACW	2 cut(s)	181, 638
TfiI	GAWTC	2 cut(s)	539, 584
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	2 cut(s)	19, 586
TseI	GCWGC	1 cut(s)	26
TspDTI	ATGAA	4 cut(s)	17, 201, 366, 461
TspRI	CASTG	2 cut(s)	19, 586
XapI	RAATTY	2 cut(s)	188, 483
XmiI	GTMKAC	1 cut(s)	304
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	2 cut(s)	510, 606
ZrmI	AGTACT	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.