Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0004452

Physical Location & Seq

Genomic Coordinates Reverse (-)

30483211 .. 30485324

Gene Structure 2114 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1211200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTCAAAGCCACTGGAGAGATACCAAAAACTTGTCCTCAAAGAATCATTGCCCAAAATCCACAGGTACCCTTTTGCCTGCAGAGAGCTCAGCTTAATCCTCAGAGGCGCTTACAAGAAATTCCCCAAGAATCTCCAATCTCTCATCTTCCAAGACACTCTCACGGCCTTTCGTCTCCTTCCCGAAATGCAGACGCGCAATGCTGTTTTGGCAGCCCATCTCCTCCTCCAGAGTGCCGAGGCCGCGTTGCCGAAGCAAAAGAAGAATCTGGCTGTCGCAGAATACAAGAACGCAATGGTTGCTCATAAGAGGCGCACTAAAGCACGGCAAGAAGAAAAGGTTTCGGGTTCGACCCAGCTGCCACAAGATGTTCTTGTTCACATATTTGGGTTCCTCGATATGCAATCCTTGGCCTCTGTTGGACTAGTCTGCTGGTCGTGGAACATAGCGGCAAGTGATAACCATCTATGGGAGACACAATACGCTACTTTCTTCGGGAAGTCTGAGGATGATAAGCTGATTAAGGCTCGGAAACTTAGTGGTCGACGGGTTGAAGATGAAGAAGGGTACACACTATTTTGGAAAGAAGCCTTCAAAAGGGCATATTTAGGCAGCTCGTCGAAGAAATTGAAATCCGGTAGGGGATACTGTAGAGACTGCAACACGATTGTTTGGCTTGACAACATGAAATGTTCAAATGAACATAGGGGACAAAATTCGGAAAACCATCAAATTAAGCCCGTGTTACCTAATCAGGTGGTTGGATATCTGTTGGATGATTCTATATCAATGATATCTTCTTCAGACAGTGATAGCGATTCAGATGAAGGGCCATTTTCCAGGTTATGGGCCTACAGAAGACCCCTTAGCAAGAGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

294

Amino Acids

33.54

Weight (kDa)

9.47

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At5g52880_ARM	PF24104	6 - 104	5e-43	F-box protein At5g52880 ARM repeat
F-box-like	PF12937	119 - 161	1.3e-14	F-box-like
F-box	PF00646	119 - 158	3.9e-08	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52880
fragaria_vesca	FvH4_7g30600 FvH4_7g30600
malus_domestica	MD01G1211200.v1.1
prunus_persica	Prupe.2G291600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G304000_v2.0.a1
pyrus_communis	pycom01g22170
rosa_chinensis	RchiOBHm_Chr1g0378761 RchiOBHm_Chr1g0379101 RchiOBHm_Chr1g0379281 RchiOBHm_Chr1g0379501 RchiOBHm_Chr1g0379511
rosa_laevigata	RLG00000026397
rosa_multiflora	Rmu_sc0031430.1_g000003 Rmu_sc0031430.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280130 Rroxscaffold_4G00280150
rosa_rugosa	Rorug01G0412300 Rorug01G0412400
rosa_samantha	Rh1AG434800 Rh1AG435100 Rh1BG392600 Rh1CG405300 Rh1DG423400
rosa_wichuraiana	Rw1G038010 Rw1G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	66
AccB1I	GGYRCC	1 cut(s)	66
AccB7I	CCANNNNNTGG	1 cut(s)	846
AccI	GTMKAC	1 cut(s)	544
AccII	CGCG	2 cut(s)	196, 245
AciI	CCGC	2 cut(s)	243, 449
AcsI	RAATTY	2 cut(s)	119, 715
AcuI	CTGAAG	1 cut(s)	786
AfaI	GTAC	2 cut(s)	68, 569
AfiI	CCNNNNNNNGG	3 cut(s)	469, 597, 846
AgsI	TTSAA	4 cut(s)	554, 595, 631, 696
AhlI	ACTAGT	1 cut(s)	424
AjnI	CCWGG	1 cut(s)	839
AluBI	AGCT	5 cut(s)	88, 93, 358, 517, 615
AluI	AGCT	5 cut(s)	88, 93, 358, 517, 615
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	3 cut(s)	179, 467, 648
AoxI	GGCC	5 cut(s)	165, 240, 411, 830, 849
ApeKI	GCWGC	3 cut(s)	212, 358, 612
ApoI	RAATTY	2 cut(s)	119, 715
Asp718I	GGTACC	1 cut(s)	66
AspLEI	GCGC	3 cut(s)	110, 198, 315
AspS9I	GGNCC	2 cut(s)	830, 849
BanI	GGYRCC	1 cut(s)	66
BanII	GRGCYC	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	865
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	3 cut(s)	224, 345, 624
BccI	CCATC	3 cut(s)	225, 471, 735
BceAI	ACGGC	2 cut(s)	180, 341
BcgI	CGANNNNNNTGC	2 cut(s)	340, 374
BciT130I	CCWGG	1 cut(s)	841
BciVI	GTATCC	1 cut(s)	638
BcoDI	GTCTC	3 cut(s)	179, 467, 648
BcuI	ACTAGT	1 cut(s)	424
BfaI	CTAG	1 cut(s)	425
BfmI	CTRYAG	3 cut(s)	79, 649, 853
BfoI	RGCGCY	1 cut(s)	111
BfuI	GTATCC	1 cut(s)	638
BisI	GCNGC	5 cut(s)	213, 243, 359, 450, 613
BlpI	GCTNAGC	1 cut(s)	89
BlsI	GCNGC	5 cut(s)	214, 244, 360, 451, 614
Bme1390I	CCNGG	1 cut(s)	841
BmgT120I	GGNCC	2 cut(s)	830, 849
BmiI	GGNNCC	2 cut(s)	68, 392
BmrFI	CCNGG	1 cut(s)	841
BpiI	GAAGAC	1 cut(s)	865
BpmI	CTGGAG	2 cut(s)	35, 212
Bpu10I	CCTNAGC	1 cut(s)	866
Bpu1102I	GCTNAGC	1 cut(s)	89
BsaBI	GATNNNNATC	1 cut(s)	462
BsaJI	CCNNGG	2 cut(s)	237, 408
BsaWI	WCCGGW	1 cut(s)	635
Bsc4I	CCNNNNNNNGG	3 cut(s)	469, 597, 846
Bse1I	ACTGG	1 cut(s)	18
Bse3DI	GCAATG	3 cut(s)	47, 205, 300
Bse8I	GATNNNNATC	1 cut(s)	462
BseBI	CCWGG	1 cut(s)	841
BseDI	CCNNGG	2 cut(s)	237, 408
BseGI	GGATG	2 cut(s)	514, 781
BseJI	GATNNNNATC	1 cut(s)	462
BseLI	CCNNNNNNNGG	3 cut(s)	469, 597, 846
BseMI	GCAATG	3 cut(s)	47, 205, 300
BseMII	CTCAG	3 cut(s)	103, 115, 495
BseNI	ACTGG	1 cut(s)	18
BseRI	GAGGAG	2 cut(s)	212, 215
BseXI	GCAGC	3 cut(s)	224, 345, 624
BseYI	CCCAGC	1 cut(s)	354
Bsh1236I	CGCG	2 cut(s)	196, 245
BshFI	GGCC	5 cut(s)	167, 242, 413, 832, 851
BshNI	GGYRCC	1 cut(s)	66
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	636
BslFI	GGGAC	1 cut(s)	723
BslI	CCNNNNNNNGG	3 cut(s)	469, 597, 846
BsmAI	GTCTC	3 cut(s)	179, 467, 648
BsmBI	CGTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	723
BsnI	GGCC	5 cut(s)	167, 242, 413, 832, 851
Bsp1286I	GDGCHC	1 cut(s)	90
Bsp1720I	GCTNAGC	1 cut(s)	89
BspACI	CCGC	2 cut(s)	243, 449
BspANI	GGCC	5 cut(s)	167, 242, 413, 832, 851
BspCNI	CTCAG	3 cut(s)	102, 114, 496
BspFNI	CGCG	2 cut(s)	196, 245
BspLI	GGNNCC	2 cut(s)	68, 392
BspMAI	CTGCAG	1 cut(s)	83
BspT107I	GGYRCC	1 cut(s)	66
BsrDI	GCAATG	3 cut(s)	47, 205, 300
BsrI	ACTGG	1 cut(s)	18
BssECI	CCNNGG	2 cut(s)	237, 408
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	841
Bst4CI	ACNGT	2 cut(s)	650, 809
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	5 cut(s)	89, 101, 504, 536, 866
BstENI	CCTNNNNNAGG	1 cut(s)	595
BstF5I	GGATG	2 cut(s)	514, 781
BstFNI	CGCG	2 cut(s)	196, 245
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	3 cut(s)	110, 198, 315
BstMAI	GTCTC	3 cut(s)	179, 467, 648
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 242, 299
BstNI	CCWGG	1 cut(s)	841
BstSCI	CCNGG	1 cut(s)	839
BstSFI	CTRYAG	3 cut(s)	79, 649, 853
BstUI	CGCG	2 cut(s)	196, 245
BstV1I	GCAGC	3 cut(s)	224, 345, 624
BstV2I	GAAGAC	1 cut(s)	865
BsuI	GTATCC	1 cut(s)	638
BsuRI	GGCC	5 cut(s)	167, 242, 413, 832, 851
BtsCI	GGATG	2 cut(s)	514, 781
BtsIMutI	CAGTG	2 cut(s)	11, 814
Cac8I	GCNNGC	1 cut(s)	79
CfoI	GCGC	3 cut(s)	110, 198, 315
Cfr13I	GGNCC	2 cut(s)	830, 849
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	2 cut(s)	67, 568
CviAII	CATG	1 cut(s)	685
CviQI	GTAC	2 cut(s)	67, 568
DdeI	CTNAG	5 cut(s)	89, 101, 504, 536, 866
Ecl136II	GAGCTC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	90
Eco32I	GATATC	2 cut(s)	767, 795
Eco53kI	GAGCTC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	786
EcoICRI	GAGCTC	1 cut(s)	88
EcoNI	CCTNNNNNAGG	1 cut(s)	595
EcoRII	CCWGG	1 cut(s)	839
EcoRV	GATATC	2 cut(s)	767, 795
EcoT14I	CCWWGG	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	408
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	1 cut(s)	688
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FaqI	GGGAC	1 cut(s)	723
FatI	CATG	1 cut(s)	684
FblI	GTMKAC	1 cut(s)	544
Fnu4HI	GCNGC	5 cut(s)	213, 243, 359, 450, 613
FokI	GGATG	2 cut(s)	521, 788
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	5 cut(s)	213, 243, 359, 450, 613
FspBI	CTAG	1 cut(s)	425
GlaI	GCGC	3 cut(s)	109, 197, 314
GluI	GCNGC	5 cut(s)	213, 243, 359, 450, 613
GsaI	CCCAGC	1 cut(s)	358
GsuI	CTGGAG	2 cut(s)	35, 212
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	5 cut(s)	167, 242, 413, 832, 851
HapII	CCGG	1 cut(s)	636
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	3 cut(s)	110, 198, 315
Hin1II	CATG	1 cut(s)	688
Hin6I	GCGC	3 cut(s)	108, 196, 313
HinP1I	GCGC	3 cut(s)	108, 196, 313
HincII	GTYRAC	1 cut(s)	545
HindII	GTYRAC	1 cut(s)	545
HinfI	GANTC	6 cut(s)	44, 130, 265, 779, 818, 874
HpaII	CCGG	1 cut(s)	636
Hpy166II	GTNNAC	3 cut(s)	379, 545, 570
Hpy188I	TCNGA	6 cut(s)	104, 505, 531, 721, 805, 823
Hpy188III	TCNNGA	3 cut(s)	182, 229, 496
Hpy8I	GTNNAC	3 cut(s)	379, 545, 570
Hpy99I	CGWCG	2 cut(s)	549, 622
HpyAV	CCTTC	4 cut(s)	188, 557, 601, 821
HpyCH4III	ACNGT	2 cut(s)	650, 809
HpyCH4V	TGCA	4 cut(s)	81, 190, 403, 660
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 242, 299
HpyF3I	CTNAG	5 cut(s)	89, 101, 504, 536, 866
Hsp92II	CATG	1 cut(s)	688
HspAI	GCGC	3 cut(s)	108, 196, 313
KpnI	GGTACC	1 cut(s)	70
Lsp1109I	GCAGC	3 cut(s)	224, 345, 624
MaeI	CTAG	1 cut(s)	425
MaeIII	GTNAC	1 cut(s)	744
MhlI	GDGCHC	1 cut(s)	90
MluCI	AATT	4 cut(s)	119, 626, 715, 732
MmeI	TCCRAC	3 cut(s)	400, 742, 753
MseI	TTAA	3 cut(s)	95, 522, 735
MspA1I	CMGCKG	1 cut(s)	358
MspI	CCGG	1 cut(s)	636
MspR9I	CCNGG	1 cut(s)	841
MvaI	CCWGG	1 cut(s)	841
MvnI	CGCG	2 cut(s)	196, 245
MwoI	GCNNNNNNNGC	3 cut(s)	209, 242, 299
NlaIII	CATG	1 cut(s)	688
NlaIV	GGNNCC	2 cut(s)	68, 392
NmeAIII	GCCGAG	1 cut(s)	262
PfeI	GAWTC	5 cut(s)	44, 130, 265, 779, 818
PflMI	CCANNNNNTGG	1 cut(s)	846
PkrI	GCNGC	5 cut(s)	214, 244, 360, 451, 614
Psp124BI	GAGCTC	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	839
PspFI	CCCAGC	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	839
PspN4I	GGNNCC	2 cut(s)	68, 392
PspPI	GGNCC	2 cut(s)	830, 849
PstI	CTGCAG	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	358
RsaI	GTAC	2 cut(s)	68, 569
RsaNI	GTAC	2 cut(s)	67, 568
SacI	GAGCTC	1 cut(s)	90
SalI	GTCGAC	1 cut(s)	543
SaqAI	TTAA	3 cut(s)	95, 522, 735
SatI	GCNGC	5 cut(s)	213, 243, 359, 450, 613
Sau96I	GGNCC	2 cut(s)	830, 849
ScrFI	CCNGG	1 cut(s)	841
SduI	GDGCHC	1 cut(s)	90
SfcI	CTRYAG	3 cut(s)	79, 649, 853
SpeI	ACTAGT	1 cut(s)	424
Sse9I	AATT	4 cut(s)	119, 626, 715, 732
SsiI	CCGC	2 cut(s)	243, 449
SspMI	CTAG	1 cut(s)	425
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	839
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	2 cut(s)	650, 809
TaqI	TCGA	4 cut(s)	350, 396, 544, 620
TasI	AATT	4 cut(s)	119, 626, 715, 732
TauI	GCSGC	2 cut(s)	245, 452
TfiI	GAWTC	5 cut(s)	44, 130, 265, 779, 818
Tru1I	TTAA	3 cut(s)	95, 522, 735
Tru9I	TTAA	3 cut(s)	95, 522, 735
TscAI	CASTG	2 cut(s)	18, 814
TseI	GCWGC	3 cut(s)	212, 358, 612
TspDTI	ATGAA	4 cut(s)	573, 701, 714, 840
TspRI	CASTG	2 cut(s)	18, 814
Van91I	CCANNNNNTGG	1 cut(s)	846
XagI	CCTNNNNNAGG	1 cut(s)	595
XapI	RAATTY	2 cut(s)	119, 715
XmiI	GTMKAC	1 cut(s)	544
XspI	CTAG	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.