Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004452

Physical Location & Seq

Genomic Coordinates Reverse (-)

66023587 .. 66025056

Gene Structure 1470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG435100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAAGACACGCAGTGCTGTCTCGGCAGCTCATCTTCTACTTCAGAGTGTTGAGGCCACTTTGCCGAAGCAAAAGAAGAACTTGGCTGTTACAGAATATAAGAATGCAATGATTGCTCACAAGAGGCGCACTAAAGCTCGCCAAGAAGAGAATGTTGCCCATCTGCCACAAGATGTTCTTGTACATGTATTCAGTTTCCTGGATTTTCAATCTTTAGTCTCTGTTGGGCTAGTCTGCTGGCCATGGAATTTTGCAGCAAGTGATAACCTGCTGTGGCAGAGGCAATACGCTACGTTCTTTAGGGACTCTTACAATGACTTGAATATCAAGGAACAGCATACCAGTAGACAGGTTGAAGATGATAGTTATACGCTGTTTTGGAGAAAAGCCTTCAAAAGAGCATATAAAGGGAATAATTCATCAAAGAAATTAAAATCCAGTAGGGGATACTGTAGATACTGCAAGACAATTGTTTGGCTCGATAACATGAAATGTTTCAATGACCATATTGGACTAAATCCTGAAATGCAGAAAATTGACCCTGTATCACCTAGTCAGGTGGTTGACTATCTGTTGGAAGATTCTATATCAGTCAAATCTTCTTCAGAGAGCGATAGCGACAGTGATTCAGAAGCAGGGTCCTTTTCTAGGTTATGGGCCTATCGAAGACCCTTGACCAGTACTGAAGATATGCCTTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

234

Amino Acids

27.04

Weight (kDa)

8.94

Isoelectric Point (pI)

60.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At5g52880_ARM	PF24104	1 - 42	6.5e-13	F-box protein At5g52880 ARM repeat
F-box-like	PF12937	53 - 96	3e-15	F-box-like
F-box	PF00646	54 - 93	5.5e-08	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52880
fragaria_vesca	FvH4_7g30600 FvH4_7g30600
malus_domestica	MD01G1211200.v1.1
prunus_persica	Prupe.2G291600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G304000_v2.0.a1
pyrus_communis	pycom01g22170
rosa_chinensis	RchiOBHm_Chr1g0378761 RchiOBHm_Chr1g0379101 RchiOBHm_Chr1g0379281 RchiOBHm_Chr1g0379501 RchiOBHm_Chr1g0379511
rosa_laevigata	RLG00000026397
rosa_multiflora	Rmu_sc0031430.1_g000003 Rmu_sc0031430.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280130 Rroxscaffold_4G00280150
rosa_rugosa	Rorug01G0412300 Rorug01G0412400
rosa_samantha	Rh1AG434800 Rh1AG435100 Rh1BG392600 Rh1CG405300 Rh1DG423400
rosa_wichuraiana	Rw1G038010 Rw1G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	276
AccI	GTMKAC	1 cut(s)	346
AcoI	YGGCCR	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	247
AcuI	CTGAAG	3 cut(s)	26, 588, 705
AdeI	CACNNNGTG	1 cut(s)	14
AfaI	GTAC	2 cut(s)	183, 682
AfiI	CCNNNNNNNGG	1 cut(s)	648
AflIII	ACRYGT	1 cut(s)	184
AgsI	TTSAA	5 cut(s)	209, 322, 356, 394, 499
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	2 cut(s)	29, 137
AluI	AGCT	2 cut(s)	29, 137
Alw26I	GTCTC	2 cut(s)	25, 223
AoxI	GGCC	3 cut(s)	54, 239, 657
ApeKI	GCWGC	2 cut(s)	26, 254
ApoI	RAATTY	1 cut(s)	247
Asp700I	GAANNNNTTC	1 cut(s)	494
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	2 cut(s)	639, 657
AsuHPI	GGTGA	1 cut(s)	540
AvaII	GGWCC	1 cut(s)	639
BalI	TGGCCA	1 cut(s)	241
BbsI	GAAGAC	2 cut(s)	11, 673
BbvI	GCAGC	2 cut(s)	38, 266
BccI	CCATC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	200
BciVI	GTATCC	1 cut(s)	440
BcoDI	GTCTC	2 cut(s)	25, 223
BfaI	CTAG	3 cut(s)	230, 552, 648
BfmI	CTRYAG	1 cut(s)	451
BfuAI	ACCTGC	1 cut(s)	276
BfuI	GTATCC	1 cut(s)	440
BisI	GCNGC	2 cut(s)	27, 255
BlsI	GCNGC	2 cut(s)	28, 256
BmcAI	AGTACT	1 cut(s)	682
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	639
BmgT120I	GGNCC	2 cut(s)	639, 657
BmiI	GGNNCC	1 cut(s)	640
BmrFI	CCNGG	1 cut(s)	200
BpiI	GAAGAC	2 cut(s)	11, 673
BsaJI	CCNNGG	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	648
Bse1I	ACTGG	3 cut(s)	342, 438, 678
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	648
BseMI	GCAATG	1 cut(s)	114
BseNI	ACTGG	3 cut(s)	342, 438, 678
BseXI	GCAGC	2 cut(s)	38, 266
BshFI	GGCC	3 cut(s)	56, 241, 659
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	648
BsmAI	GTCTC	2 cut(s)	25, 223
BsmFI	GGGAC	1 cut(s)	317
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	3 cut(s)	56, 241, 659
Bsp1407I	TGTACA	1 cut(s)	181
Bsp19I	CCATGG	1 cut(s)	242
BspANI	GGCC	3 cut(s)	56, 241, 659
BspLI	GGNNCC	1 cut(s)	640
BspMI	ACCTGC	1 cut(s)	276
BsrDI	GCAATG	1 cut(s)	114
BsrGI	TGTACA	1 cut(s)	181
BsrI	ACTGG	3 cut(s)	342, 438, 678
BssECI	CCNNGG	1 cut(s)	242
BssT1I	CCWWGG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	452, 623
Bst6I	CTCTTC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	181
BstC8I	GCNNGC	2 cut(s)	139, 239
BstDSI	CCRYGG	1 cut(s)	242
BstENI	CCTNNNNNAGG	1 cut(s)	646
BstHHI	GCGC	1 cut(s)	129
BstMAI	GTCTC	2 cut(s)	25, 223
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 113
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	451
BstV1I	GCAGC	2 cut(s)	38, 266
BstV2I	GAAGAC	2 cut(s)	11, 673
BsuI	GTATCC	1 cut(s)	440
BsuRI	GGCC	3 cut(s)	56, 241, 659
BtgI	CCRYGG	1 cut(s)	242
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	19, 628
BveI	ACCTGC	1 cut(s)	276
Cac8I	GCNNGC	2 cut(s)	139, 239
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	2 cut(s)	639, 657
Csp6I	GTAC	2 cut(s)	182, 681
CviAII	CATG	3 cut(s)	185, 243, 487
CviJI	RGCY	9 cut(s)	29, 56, 86, 137, 229, 241, 389, 478, 659
CviKI_1	RGCY	9 cut(s)	29, 56, 86, 137, 229, 241, 389, 478, 659
CviQI	GTAC	2 cut(s)	182, 681
DraIII	CACNNNGTG	1 cut(s)	14
EaeI	YGGCCR	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	639
Eco57I	CTGAAG	3 cut(s)	26, 588, 705
EcoNI	CCTNNNNNAGG	1 cut(s)	646
EcoO109I	RGGNCCY	1 cut(s)	639
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	3 cut(s)	188, 246, 490
FalI	AAGNNNNNCTT	4 cut(s)	65, 97, 162, 194
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	3 cut(s)	184, 242, 486
FblI	GTMKAC	1 cut(s)	346
Fnu4HI	GCNGC	2 cut(s)	27, 255
Fsp4HI	GCNGC	2 cut(s)	27, 255
FspBI	CTAG	3 cut(s)	230, 552, 648
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	2 cut(s)	27, 255
HaeIII	GGCC	3 cut(s)	56, 241, 659
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	3 cut(s)	188, 246, 490
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HinfI	GANTC	3 cut(s)	305, 581, 626
HphI	GGTGA	1 cut(s)	540
Hpy166II	GTNNAC	2 cut(s)	347, 565
Hpy188I	TCNGA	3 cut(s)	45, 607, 631
Hpy188III	TCNNGA	1 cut(s)	521
Hpy8I	GTNNAC	2 cut(s)	347, 565
HpyAV	CCTTC	1 cut(s)	400
HpyCH4III	ACNGT	2 cut(s)	452, 623
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	4 cut(s)	107, 254, 462, 529
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 113
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	3 cut(s)	188, 246, 490
HspAI	GCGC	1 cut(s)	127
Lsp1109I	GCAGC	2 cut(s)	38, 266
MaeI	CTAG	3 cut(s)	230, 552, 648
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	88
MfeI	CAATTG	1 cut(s)	468
MlsI	TGGCCA	1 cut(s)	241
MluCI	AATT	5 cut(s)	247, 415, 428, 468, 534
MluNI	TGGCCA	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	555
MnlI	CCTC	3 cut(s)	46, 117, 273
Mox20I	TGGCCA	1 cut(s)	241
MroXI	GAANNNNTTC	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	241
MseI	TTAA	1 cut(s)	431
Msp20I	TGGCCA	1 cut(s)	241
MspR9I	CCNGG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	468
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	2 cut(s)	23, 113
NcoI	CCATGG	1 cut(s)	242
NlaIII	CATG	3 cut(s)	188, 246, 490
NlaIV	GGNNCC	1 cut(s)	640
NspI	RCATGY	1 cut(s)	188
PciI	ACATGT	1 cut(s)	184
PctI	GAATGC	1 cut(s)	109
PdmI	GAANNNNTTC	1 cut(s)	494
PfeI	GAWTC	2 cut(s)	581, 626
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	2 cut(s)	28, 256
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
PpuMI	RGGWCCY	1 cut(s)	639
PscI	ACATGT	1 cut(s)	184
Psp5II	RGGWCCY	1 cut(s)	639
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	640
PspPI	GGNCC	2 cut(s)	639, 657
PspPPI	RGGWCCY	1 cut(s)	639
RsaI	GTAC	2 cut(s)	183, 682
RsaNI	GTAC	2 cut(s)	182, 681
SaqAI	TTAA	1 cut(s)	431
SatI	GCNGC	2 cut(s)	27, 255
Sau96I	GGNCC	2 cut(s)	639, 657
ScaI	AGTACT	1 cut(s)	682
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	200
SetI	ASST	8 cut(s)	31, 139, 270, 296, 354, 553, 561, 653
SfcI	CTRYAG	1 cut(s)	451
SinI	GGWCC	1 cut(s)	639
Sse9I	AATT	5 cut(s)	247, 415, 428, 468, 534
SspMI	CTAG	3 cut(s)	230, 552, 648
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	2 cut(s)	452, 623
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	2 cut(s)	480, 664
TasI	AATT	5 cut(s)	247, 415, 428, 468, 534
TatI	WGTACW	2 cut(s)	181, 680
TfiI	GAWTC	2 cut(s)	581, 626
Tru1I	TTAA	1 cut(s)	431
Tru9I	TTAA	1 cut(s)	431
TscAI	CASTG	2 cut(s)	19, 628
TseI	GCWGC	2 cut(s)	26, 254
TspDTI	ATGAA	3 cut(s)	17, 408, 503
TspRI	CASTG	2 cut(s)	19, 628
VpaK11BI	GGWCC	1 cut(s)	639
XagI	CCTNNNNNAGG	1 cut(s)	646
XapI	RAATTY	1 cut(s)	247
XceI	RCATGY	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	346
XmnI	GAANNNNTTC	1 cut(s)	494
XspI	CTAG	3 cut(s)	230, 552, 648
ZrmI	AGTACT	1 cut(s)	682

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.