Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031430.1

Orthogroup ID

OG0004452

Physical Location & Seq

Genomic Coordinates Reverse (-)

4787 .. 5433

Gene Structure 647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031430.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atggagacgcgcagtgctgtctcagcagctcacctcctcctccagagcgttgaggccactttgccgaagcaaaagaagaacttggctgttacagaatataagaatgcaatgattgctcacaagaggcgcgctaaagctcgccaagaagagaatgttgcccatctgccacaagatgttcttgtacatgtattcagtttcctggattttcaatctttagtctctgttgggcaagtctgctggccatggaattttgcagcaagtgataaccggctgtggcagaggcaatacgctacgttctttagggactcttacaatgacttgaatatcaaggaacagcataccagtagacaggttgaagatgatagttatacgatgtattccttgctggatctgttaaaagtgcattttgtcaccggagaatctaagttgcaattttaccacttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

148

Amino Acids

17.28

Weight (kDa)

7.91

Isoelectric Point (pI)

55.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52880
fragaria_vesca	FvH4_7g30600 FvH4_7g30600
malus_domestica	MD01G1211200.v1.1
prunus_persica	Prupe.2G291600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G304000_v2.0.a1
pyrus_communis	pycom01g22170
rosa_chinensis	RchiOBHm_Chr1g0378761 RchiOBHm_Chr1g0379101 RchiOBHm_Chr1g0379281 RchiOBHm_Chr1g0379501 RchiOBHm_Chr1g0379511
rosa_laevigata	RLG00000026397
rosa_multiflora	Rmu_sc0031430.1_g000003 Rmu_sc0031430.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280130 Rroxscaffold_4G00280150
rosa_rugosa	Rorug01G0412300 Rorug01G0412400
rosa_samantha	Rh1AG434800 Rh1AG435100 Rh1BG392600 Rh1CG405300 Rh1DG423400
rosa_wichuraiana	Rw1G038010 Rw1G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	445
AccI	GTMKAC	1 cut(s)	346
AccII	CGCG	2 cut(s)	10, 129
AclWI	GGATC	1 cut(s)	396
AcoI	YGGCCR	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	247
AfaI	GTAC	1 cut(s)	183
AflIII	ACRYGT	1 cut(s)	184
AgsI	TTSAA	3 cut(s)	209, 322, 356
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	2 cut(s)	29, 137
AluI	AGCT	2 cut(s)	29, 137
Alw26I	GTCTC	2 cut(s)	25, 223
AlwI	GGATC	1 cut(s)	396
AoxI	GGCC	2 cut(s)	54, 239
ApeKI	GCWGC	2 cut(s)	26, 254
ApoI	RAATTY	1 cut(s)	247
AspLEI	GCGC	3 cut(s)	12, 129, 131
AsuHPI	GGTGA	2 cut(s)	23, 403
BalI	TGGCCA	1 cut(s)	241
BbvI	GCAGC	2 cut(s)	38, 266
BccI	CCATC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	2 cut(s)	25, 223
BisI	GCNGC	2 cut(s)	27, 255
BlsI	GCNGC	2 cut(s)	28, 256
Bme1390I	CCNGG	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	200
BpmI	CTGGAG	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	242
BsaWI	WCCGGW	1 cut(s)	413
Bse118I	RCCGGY	1 cut(s)	267
Bse1I	ACTGG	1 cut(s)	342
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	242
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	342
BsePI	GCGCGC	1 cut(s)	127
BseRI	GAGGAG	2 cut(s)	26, 29
BseXI	GCAGC	2 cut(s)	38, 266
Bsh1236I	CGCG	2 cut(s)	10, 129
BshFI	GGCC	2 cut(s)	56, 241
BsiSI	CCGG	2 cut(s)	268, 414
BslFI	GGGAC	1 cut(s)	317
BsmAI	GTCTC	2 cut(s)	25, 223
BsmFI	GGGAC	1 cut(s)	317
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	56, 241
Bsp1407I	TGTACA	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	388
Bsp19I	CCATGG	1 cut(s)	242
BspANI	GGCC	2 cut(s)	56, 241
BspCNI	CTCAG	1 cut(s)	35
BspFNI	CGCG	2 cut(s)	10, 129
BspPI	GGATC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	267
BsrGI	TGTACA	1 cut(s)	181
BsrI	ACTGG	1 cut(s)	342
BssAI	RCCGGY	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	242
BssHII	GCGCGC	1 cut(s)	127
BssMI	GATC	1 cut(s)	388
BssT1I	CCWWGG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	181
BstC8I	GCNNGC	3 cut(s)	129, 139, 239
BstDEI	CTNAG	2 cut(s)	22, 423
BstDSI	CCRYGG	1 cut(s)	242
BstFNI	CGCG	2 cut(s)	10, 129
BstHHI	GCGC	3 cut(s)	12, 129, 131
BstKTI	GATC	1 cut(s)	391
BstMAI	GTCTC	2 cut(s)	25, 223
BstMBI	GATC	1 cut(s)	388
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 113
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	198
BstUI	CGCG	2 cut(s)	10, 129
BstV1I	GCAGC	2 cut(s)	38, 266
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	2 cut(s)	56, 241
BtgI	CCRYGG	1 cut(s)	242
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	3 cut(s)	129, 139, 239
CfoI	GCGC	3 cut(s)	12, 129, 131
Cfr10I	RCCGGY	1 cut(s)	267
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	182
CviAII	CATG	2 cut(s)	185, 243
CviJI	RGCY	6 cut(s)	29, 56, 86, 137, 241, 271
CviKI_1	RGCY	6 cut(s)	29, 56, 86, 137, 241, 271
CviQI	GTAC	1 cut(s)	182
DdeI	CTNAG	2 cut(s)	22, 423
DpnI	GATC	1 cut(s)	390
DpnII	GATC	1 cut(s)	388
EaeI	YGGCCR	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	2 cut(s)	188, 246
FaiI	YATR	6 cut(s)	99, 186, 244, 339, 369, 445
FalI	AAGNNNNNCTT	4 cut(s)	65, 97, 162, 194
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	2 cut(s)	184, 242
FblI	GTMKAC	1 cut(s)	346
Fnu4HI	GCNGC	2 cut(s)	27, 255
Fsp4HI	GCNGC	2 cut(s)	27, 255
GlaI	GCGC	3 cut(s)	11, 128, 130
GluI	GCNGC	2 cut(s)	27, 255
GsuI	CTGGAG	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	56, 241
HapII	CCGG	2 cut(s)	268, 414
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	3 cut(s)	12, 129, 131
Hin1II	CATG	2 cut(s)	188, 246
Hin6I	GCGC	3 cut(s)	10, 127, 129
HinP1I	GCGC	3 cut(s)	10, 127, 129
HinfI	GANTC	2 cut(s)	305, 419
HpaII	CCGG	2 cut(s)	268, 414
HphI	GGTGA	2 cut(s)	23, 403
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	1 cut(s)	347
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	4 cut(s)	107, 254, 403, 430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 113
HpyF3I	CTNAG	2 cut(s)	22, 423
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	2 cut(s)	188, 246
HspAI	GCGC	3 cut(s)	10, 127, 129
Kzo9I	GATC	1 cut(s)	388
LpnPI	CCDG	9 cut(s)	56, 185, 212, 223, 281, 335, 355, 371, 427
Lsp1109I	GCAGC	2 cut(s)	38, 266
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	2 cut(s)	88, 409
MalI	GATC	1 cut(s)	390
MboI	GATC	1 cut(s)	388
MboII	GAAGA	3 cut(s)	88, 158, 368
MflI	RGATCY	1 cut(s)	388
MlsI	TGGCCA	1 cut(s)	241
MluCI	AATT	2 cut(s)	247, 431
MluNI	TGGCCA	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	299
MnlI	CCTC	6 cut(s)	44, 46, 47, 50, 117, 273
Mox20I	TGGCCA	1 cut(s)	241
MscI	TGGCCA	1 cut(s)	241
MseI	TTAA	1 cut(s)	395
Msp20I	TGGCCA	1 cut(s)	241
MspI	CCGG	2 cut(s)	268, 414
MspR9I	CCNGG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	2 cut(s)	10, 129
MwoI	GCNNNNNNNGC	2 cut(s)	23, 113
NcoI	CCATGG	1 cut(s)	242
NdeII	GATC	1 cut(s)	388
NlaIII	CATG	2 cut(s)	188, 246
NmuCI	GTSAC	1 cut(s)	409
NspI	RCATGY	1 cut(s)	188
PauI	GCGCGC	1 cut(s)	127
PciI	ACATGT	1 cut(s)	184
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	1 cut(s)	419
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	2 cut(s)	28, 256
PleI	GAGTC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	299
PscI	ACATGT	1 cut(s)	184
PsiI	TTATAA	1 cut(s)	445
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PsuI	RGATCY	1 cut(s)	388
PteI	GCGCGC	1 cut(s)	127
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	395
SatI	GCNGC	2 cut(s)	27, 255
Sau3AI	GATC	1 cut(s)	388
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	1 cut(s)	200
SetI	ASST	5 cut(s)	31, 36, 139, 296, 354
Sse9I	AATT	2 cut(s)	247, 431
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	242
TaiI	ACGT	1 cut(s)	296
TasI	AATT	2 cut(s)	247, 431
TatI	WGTACW	1 cut(s)	181
TfiI	GAWTC	1 cut(s)	419
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	2 cut(s)	26, 254
Tsp45I	GTSAC	1 cut(s)	409
TspRI	CASTG	1 cut(s)	19
XapI	RAATTY	1 cut(s)	247
XceI	RCATGY	1 cut(s)	188
XmiI	GTMKAC	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.