Rroxscaffold_4G00280130

f-box protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
2776555 .. 2780478
3924 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00280130.1

Sequence Viewer

Length: 1179 bp
ATGTCAAAACAATTGGAGAGATACCAAAAACTTGCGCTGAAAGAATCTTTAGGATCAATTCACAGATACCCTTTAGTCTGCAAAGAGCTCAGCTTAATTCTCAGAGGCGCTTACAGAAAAGTGCCCAAGAATCTCCAGTCTCTTATCTTCCAAGATACCCTCACCGCCTTTCGTCTCCTTCCTGAAATGAAGACGCGCAGTGCTGTCTCAGCAGCTCACCTCCTCCTCCAGAGCGTTGAGGCCACTTTGCCGAAGCAAAAGAAGAACTTGGCTGTTACAGAATATAAGAATGCAATGATTGCTCACAAGAGGCGCGCTAAAGCTCGCCAAGAAGAGAATGTTGCCCATCTGCCACAAGATGTTCTTGTACATGTATTCAGTTTCCTGGATTTTCAATCTTTAGTCTCTGTTGGGCAAGTCTGCTGGCCATGGAATTTTGCAGCAAGTGATAACCGGCTGTGGCAGAGGCAATACGCTACGTTCTTTAGGGACTCTTACAATGACTTGAATATCAAGGAACAGCATACCAGTAGACAGGTTGAAGATGATAGTTATACGCTGTTTTGGAGAAAAGCCTTCAAAAGAGCATATAAAGGGAATAATTCATCAAAGAAATTAAAATCCAGTAGGGGATACTGTAGATACTGCAAGACAATTGTTTGGCTCGATAACATGAAATGTTTCAATAACCATATTGGACTAAATCCTGAAATTCAGAAAATTGACCCTGTATCACCTAGTCAGGTGGTTGACTATCTGTTGGAAGATTCTATATCAGTCAAATCTTCTTCAGAGAGTGATAGCGACAGTGATTCAGAAGCAGGGTCCTTTTCTAGGTATCCCAGTATCAATGCAGATGATGCTATCCTTAATTGGCCAAGGATTCATCAAAATGAAGAGGAACTTGGGGCACAAAGAGGAATCAAGAATGTACCAATCAAGATCATCATTCCAGAGATGGTGTACTGTAATGGGAACAAAGCTACTTCACCTACGGGCTGCAAACATCTCACCGATATGAATCCAATGTCTTTTAAACCATCTCCCTGCATCTGGTTTTACTTTGATCCACCACCTCAAAGCAAATCAAATCATACACCAGCACAAATGGCTCCCAGAGACGAACCTCCTGTCCAAGAGGAGCAGCAAAACTTGGCGTCATTAAGATGTTTAACATGA

Protein Analysis

392

Amino Acids

44.95

Weight (kDa)

9.1

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At5g52880_ARM PF24104 6 - 104 1.4e-42 F-box protein At5g52880 ARM repeat
F-box-like PF12937 115 - 158 2.3e-15 F-box-like
F-box PF00646 116 - 155 3.6e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 532
AccII CGCG 2 cut(s) 196, 315
AciI CCGC 1 cut(s) 165
AclWI GGATC 2 cut(s) 61, 1061
AcoI YGGCCR 2 cut(s) 425, 875
AcsI RAATTY 2 cut(s) 433, 711
AcuI CTGAAG 1 cut(s) 774
AcyI GRCGYC 1 cut(s) 1157
AfaI GTAC 3 cut(s) 369, 933, 965
AfiI CCNNNNNNNGG 2 cut(s) 834, 1053
AflIII ACRYGT 1 cut(s) 370
AgsI TTSAA 5 cut(s) 395, 508, 542, 580, 685
AjnI CCWGG 1 cut(s) 384
AjuI GAANNNNNNNTTGG 2 cut(s) 888, 920
AloI GAACNNNNNNTCC 2 cut(s) 1116, 1148
AluBI AGCT 5 cut(s) 88, 93, 215, 323, 983
AluI AGCT 5 cut(s) 88, 93, 215, 323, 983
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 5 cut(s) 144, 179, 211, 409, 1113
AlwI GGATC 2 cut(s) 61, 1061
AoxI GGCC 3 cut(s) 240, 425, 875
ApeKI GCWGC 4 cut(s) 212, 440, 999, 1144
ApoI RAATTY 2 cut(s) 433, 711
ArsI GACNNNNNNTTYG 2 cut(s) 1116, 1148
Asp700I GAANNNNTTC 1 cut(s) 680
AspLEI GCGC 5 cut(s) 37, 110, 198, 315, 317
AspS9I GGNCC 1 cut(s) 825
AsuHPI GGTGA 5 cut(s) 154, 209, 726, 981, 1003
AvaII GGWCC 1 cut(s) 825
BaeGI GKGCMC 2 cut(s) 126, 913
BalI TGGCCA 2 cut(s) 427, 877
BanII GRGCYC 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 4 cut(s) 224, 452, 986, 1156
BccI CCATC 3 cut(s) 354, 952, 1048
BciT130I CCWGG 1 cut(s) 386
BciVI GTATCC 2 cut(s) 626, 849
BcoDI GTCTC 5 cut(s) 144, 179, 211, 409, 1113
BfaI CTAG 2 cut(s) 738, 834
BfmI CTRYAG 1 cut(s) 637
BfoI RGCGCY 1 cut(s) 111
BfuI GTATCC 2 cut(s) 626, 849
BisI GCNGC 4 cut(s) 213, 441, 1000, 1145
BlpI GCTNAGC 1 cut(s) 89
BlsI GCNGC 4 cut(s) 214, 442, 1001, 1146
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 1 cut(s) 825
BmgT120I GGNCC 1 cut(s) 825
BmiI GGNNCC 2 cut(s) 826, 1113
BmrFI CCNGG 1 cut(s) 386
BmrI ACTGGG 1 cut(s) 837
BmsI GCATC 2 cut(s) 850, 1059
BmuI ACTGGG 1 cut(s) 837
BpiI GAAGAC 1 cut(s) 197
BpmI CTGGAG 2 cut(s) 119, 212
Bpu1102I GCTNAGC 1 cut(s) 89
BsaBI GATNNNNATC 1 cut(s) 1020
BsaHI GRCGYC 1 cut(s) 1157
BsaJI CCNNGG 2 cut(s) 428, 878
Bsc4I CCNNNNNNNGG 2 cut(s) 834, 1053
Bse118I RCCGGY 1 cut(s) 453
Bse1I ACTGG 4 cut(s) 136, 528, 624, 843
Bse3DI GCAATG 1 cut(s) 300
Bse8I GATNNNNATC 1 cut(s) 1020
BseBI CCWGG 1 cut(s) 386
BseDI CCNNGG 2 cut(s) 428, 878
BseJI GATNNNNATC 1 cut(s) 1020
BseLI CCNNNNNNNGG 2 cut(s) 834, 1053
BseMI GCAATG 1 cut(s) 300
BseMII CTCAG 3 cut(s) 103, 115, 222
BseNI ACTGG 4 cut(s) 136, 528, 624, 843
BsePI GCGCGC 1 cut(s) 313
BseRI GAGGAG 3 cut(s) 212, 215, 1154
BseSI GKGCMC 2 cut(s) 126, 913
BseXI GCAGC 4 cut(s) 224, 452, 986, 1156
Bsh1236I CGCG 2 cut(s) 196, 315
BshFI GGCC 3 cut(s) 242, 427, 877
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 1 cut(s) 454
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 2 cut(s) 834, 1053
BsmAI GTCTC 5 cut(s) 144, 179, 211, 409, 1113
BsmBI CGTCTC 2 cut(s) 179, 1113
BsmFI GGGAC 1 cut(s) 503
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 3 cut(s) 242, 427, 877
Bsp1286I GDGCHC 3 cut(s) 90, 126, 913
Bsp1407I TGTACA 1 cut(s) 367
Bsp143I GATC 3 cut(s) 53, 942, 1066
Bsp1720I GCTNAGC 1 cut(s) 89
Bsp19I CCATGG 1 cut(s) 428
BspACI CCGC 1 cut(s) 165
BspANI GGCC 3 cut(s) 242, 427, 877
BspCNI CTCAG 3 cut(s) 102, 114, 221
BspFNI CGCG 2 cut(s) 196, 315
BspLI GGNNCC 2 cut(s) 826, 1113
BspPI GGATC 2 cut(s) 61, 1061
BsrDI GCAATG 1 cut(s) 300
BsrFI RCCGGY 1 cut(s) 453
BsrGI TGTACA 1 cut(s) 367
BsrI ACTGG 4 cut(s) 136, 528, 624, 843
BssAI RCCGGY 1 cut(s) 453
BssECI CCNNGG 2 cut(s) 428, 878
BssHII GCGCGC 1 cut(s) 313
BssMI GATC 3 cut(s) 53, 942, 1066
BssNI GRCGYC 1 cut(s) 1157
BssT1I CCWWGG 2 cut(s) 428, 878
Bst2UI CCWGG 1 cut(s) 386
Bst4CI ACNGT 3 cut(s) 638, 809, 968
Bst6I CTCTTC 2 cut(s) 327, 891
BstACI GRCGYC 1 cut(s) 1157
BstAPI GCANNNNNTGC 2 cut(s) 299, 860
BstAUI TGTACA 1 cut(s) 367
BstC8I GCNNGC 3 cut(s) 315, 325, 425
BstDEI CTNAG 3 cut(s) 89, 101, 208
BstDSI CCRYGG 1 cut(s) 428
BstENI CCTNNNNNAGG 1 cut(s) 832
BstFNI CGCG 2 cut(s) 196, 315
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 5 cut(s) 37, 110, 198, 315, 317
BstKTI GATC 3 cut(s) 56, 945, 1069
BstMAI GTCTC 5 cut(s) 144, 179, 211, 409, 1113
BstMBI GATC 3 cut(s) 53, 942, 1066
BstMWI GCNNNNNNNGC 4 cut(s) 209, 299, 860, 1109
BstNI CCWGG 1 cut(s) 386
BstNSI RCATGY 1 cut(s) 374
BstSCI CCNGG 1 cut(s) 384
BstSFI CTRYAG 1 cut(s) 637
BstSLI GKGCMC 2 cut(s) 126, 913
BstUI CGCG 2 cut(s) 196, 315
BstV1I GCAGC 4 cut(s) 224, 452, 986, 1156
BstV2I GAAGAC 1 cut(s) 197
BsuI GTATCC 2 cut(s) 626, 849
BsuRI GGCC 3 cut(s) 242, 427, 877
BtgI CCRYGG 1 cut(s) 428
BtsI GCAGTG 1 cut(s) 205
BtsIMutI CAGTG 2 cut(s) 205, 814
Cac8I GCNNGC 3 cut(s) 315, 325, 425
CfoI GCGC 5 cut(s) 37, 110, 198, 315, 317
Cfr10I RCCGGY 1 cut(s) 453
Cfr13I GGNCC 1 cut(s) 825
CseI GACGC 2 cut(s) 202, 1146
Csp6I GTAC 3 cut(s) 368, 932, 964
CviAII CATG 4 cut(s) 371, 429, 673, 1176
CviQI GTAC 3 cut(s) 368, 932, 964
DdeI CTNAG 3 cut(s) 89, 101, 208
DpnI GATC 3 cut(s) 55, 944, 1068
DpnII GATC 3 cut(s) 53, 942, 1066
DraI TTTAAA 1 cut(s) 1036
EaeI YGGCCR 2 cut(s) 425, 875
Eam1104I CTCTTC 2 cut(s) 327, 891
EarI CTCTTC 2 cut(s) 327, 891
Ecl136II GAGCTC 1 cut(s) 88
Eco130I CCWWGG 2 cut(s) 428, 878
Eco24I GRGCYC 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 825
Eco53kI GAGCTC 1 cut(s) 88
Eco57I CTGAAG 1 cut(s) 774
EcoICRI GAGCTC 1 cut(s) 88
EcoNI CCTNNNNNAGG 1 cut(s) 832
EcoO109I RGGNCCY 1 cut(s) 825
EcoRII CCWGG 1 cut(s) 384
EcoT14I CCWWGG 2 cut(s) 428, 878
EcoT38I GRGCYC 1 cut(s) 90
ErhI CCWWGG 2 cut(s) 428, 878
Esp3I CGTCTC 2 cut(s) 179, 1113
FaeI CATG 4 cut(s) 374, 432, 676, 1179
FalI AAGNNNNNCTT 6 cut(s) 251, 283, 348, 380, 888, 920
FaqI GGGAC 1 cut(s) 503
FatI CATG 4 cut(s) 370, 428, 672, 1175
FblI GTMKAC 1 cut(s) 532
Fnu4HI GCNGC 4 cut(s) 213, 441, 1000, 1145
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 4 cut(s) 213, 441, 1000, 1145
FspBI CTAG 2 cut(s) 738, 834
GlaI GCGC 5 cut(s) 36, 109, 197, 314, 316
GluI GCNGC 4 cut(s) 213, 441, 1000, 1145
GsuI CTGGAG 2 cut(s) 119, 212
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 3 cut(s) 242, 427, 877
HapII CCGG 1 cut(s) 454
HgaI GACGC 2 cut(s) 202, 1146
HhaI GCGC 5 cut(s) 37, 110, 198, 315, 317
Hin1I GRCGYC 1 cut(s) 1157
Hin1II CATG 4 cut(s) 374, 432, 676, 1179
Hin6I GCGC 5 cut(s) 35, 108, 196, 313, 315
HinP1I GCGC 5 cut(s) 35, 108, 196, 313, 315
HincII GTYRAC 1 cut(s) 751
HindII GTYRAC 1 cut(s) 751
HinfI GANTC 8 cut(s) 44, 130, 491, 767, 812, 883, 921, 1021
HpaII CCGG 1 cut(s) 454
HphI GGTGA 5 cut(s) 154, 209, 726, 981, 1003
Hpy166II GTNNAC 3 cut(s) 533, 751, 964
Hpy188I TCNGA 4 cut(s) 104, 717, 793, 817
Hpy188III TCNNGA 6 cut(s) 182, 229, 707, 925, 940, 953
Hpy8I GTNNAC 3 cut(s) 533, 751, 964
HpyAV CCTTC 2 cut(s) 188, 586
HpyCH4III ACNGT 3 cut(s) 638, 809, 968
HpyCH4IV ACGT 1 cut(s) 479
HpyCH4V TGCA 7 cut(s) 81, 293, 440, 648, 854, 1002, 1050
HpyF10VI GCNNNNNNNGC 4 cut(s) 209, 299, 860, 1109
HpyF3I CTNAG 3 cut(s) 89, 101, 208
HpySE526I ACGT 1 cut(s) 479
Hsp92I GRCGYC 1 cut(s) 1157
Hsp92II CATG 4 cut(s) 374, 432, 676, 1179
HspAI GCGC 5 cut(s) 35, 108, 196, 313, 315
Kzo9I GATC 3 cut(s) 53, 942, 1066
LmnI GCTCC 2 cut(s) 1117, 1141
Lsp1109I GCAGC 4 cut(s) 224, 452, 986, 1156
LweI GCATC 2 cut(s) 850, 1059
MaeI CTAG 2 cut(s) 738, 834
MaeII ACGT 1 cut(s) 479
MaeIII GTNAC 1 cut(s) 274
MalI GATC 3 cut(s) 55, 944, 1068
MboI GATC 3 cut(s) 53, 942, 1066
MboII GAAGA 9 cut(s) 139, 202, 274, 344, 554, 776, 777, 780, 908
MfeI CAATTG 2 cut(s) 11, 654
MhlI GDGCHC 3 cut(s) 90, 126, 913
MlsI TGGCCA 2 cut(s) 427, 877
MluNI TGGCCA 2 cut(s) 427, 877
MlyI GAGTC 1 cut(s) 485
MmeI TCCRAC 1 cut(s) 741
Mox20I TGGCCA 2 cut(s) 427, 877
MroXI GAANNNNTTC 1 cut(s) 680
MscI TGGCCA 2 cut(s) 427, 877
MseI TTAA 6 cut(s) 95, 617, 870, 1035, 1163, 1172
MslI CAYNNNNRTG 3 cut(s) 891, 1016, 1165
Msp20I TGGCCA 2 cut(s) 427, 877
MspI CCGG 1 cut(s) 454
MspR9I CCNGG 1 cut(s) 386
MunI CAATTG 2 cut(s) 11, 654
Mva1269I GAATGC 1 cut(s) 295
MvaI CCWGG 1 cut(s) 386
MvnI CGCG 2 cut(s) 196, 315
MwoI GCNNNNNNNGC 4 cut(s) 209, 299, 860, 1109
NcoI CCATGG 1 cut(s) 428
NdeII GATC 3 cut(s) 53, 942, 1066
NlaIII CATG 4 cut(s) 374, 432, 676, 1179
NlaIV GGNNCC 2 cut(s) 826, 1113
NspI RCATGY 1 cut(s) 374
PauI GCGCGC 1 cut(s) 313
PciI ACATGT 1 cut(s) 370
PctI GAATGC 1 cut(s) 295
PdmI GAANNNNTTC 1 cut(s) 680
PfeI GAWTC 7 cut(s) 44, 130, 767, 812, 883, 921, 1021
PfoI TCCNGGA 1 cut(s) 384
PkrI GCNGC 4 cut(s) 214, 442, 1001, 1146
PleI GAGTC 1 cut(s) 485
PpsI GAGTC 1 cut(s) 485
PpuMI RGGWCCY 1 cut(s) 825
PscI ACATGT 1 cut(s) 370
Psp124BI GAGCTC 1 cut(s) 90
Psp5II RGGWCCY 1 cut(s) 825
Psp6I CCWGG 1 cut(s) 384
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 2 cut(s) 826, 1113
PspPI GGNCC 1 cut(s) 825
PspPPI RGGWCCY 1 cut(s) 825
PteI GCGCGC 1 cut(s) 313
RsaI GTAC 3 cut(s) 369, 933, 965
RsaNI GTAC 3 cut(s) 368, 932, 964
RseI CAYNNNNRTG 3 cut(s) 891, 1016, 1165
SacI GAGCTC 1 cut(s) 90
SaqAI TTAA 6 cut(s) 95, 617, 870, 1035, 1163, 1172
SatI GCNGC 4 cut(s) 213, 441, 1000, 1145
Sau3AI GATC 3 cut(s) 53, 942, 1066
Sau96I GGNCC 1 cut(s) 825
SchI GAGTC 1 cut(s) 485
ScrFI CCNGG 1 cut(s) 386
SduI GDGCHC 3 cut(s) 90, 126, 913
SfaNI GCATC 2 cut(s) 850, 1059
SfcI CTRYAG 1 cut(s) 637
SinI GGWCC 1 cut(s) 825
SmiMI CAYNNNNRTG 3 cut(s) 891, 1016, 1165
SsiI CCGC 1 cut(s) 165
SspMI CTAG 2 cut(s) 738, 834
SstI GAGCTC 1 cut(s) 90
StyD4I CCNGG 1 cut(s) 384
StyI CCWWGG 2 cut(s) 428, 878
TaaI ACNGT 3 cut(s) 638, 809, 968
TaiI ACGT 1 cut(s) 482
TaqI TCGA 1 cut(s) 666
TatI WGTACW 2 cut(s) 367, 963
TfiI GAWTC 7 cut(s) 44, 130, 767, 812, 883, 921, 1021
Tru1I TTAA 6 cut(s) 95, 617, 870, 1035, 1163, 1172
Tru9I TTAA 6 cut(s) 95, 617, 870, 1035, 1163, 1172
TscAI CASTG 2 cut(s) 205, 814
TseI GCWGC 4 cut(s) 212, 440, 999, 1144
TspDTI ATGAA 6 cut(s) 203, 594, 689, 875, 909, 1034
TspRI CASTG 2 cut(s) 205, 814
VpaK11BI GGWCC 1 cut(s) 825
XagI CCTNNNNNAGG 1 cut(s) 832
XapI RAATTY 2 cut(s) 433, 711
XceI RCATGY 1 cut(s) 374
XmiI GTMKAC 1 cut(s) 532
XmnI GAANNNNTTC 1 cut(s) 680
XspI CTAG 2 cut(s) 738, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.