Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031430.1

Orthogroup ID

OG0004452

Physical Location & Seq

Genomic Coordinates Reverse (-)

9524 .. 14093

Gene Structure 4570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031430.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgaatcggagacaagtggaatgggagaagaaaggaatcgatcttgattccggaggaatgattcctaaactcatctccctccttcgtaatcgaattcctgagtattcaggaatcggaatcgagataaggagataccctttagtctgcaaagagctcagcttaattctcagaggcgcttacagaaaagtgcccaagaatctccagtctcttatcttccaagataccctcaccgcctttcgtctccttcctgaaatgaagacgcgcagtgctgtctcagcagctcacctcctcctccagagcgttgaggccactttgccgaagcaaaagaagaacttggctgttacagaatataagaatgcaatgattgctcacaggaggcgcgctaaagctcgccaagaagagaatgttgcccatctgccacaagatgttcttgtacatgtattcagtttcctggattttcaatctttagtctctgttgggcaagtctgctggccctggaattttgcagcaagtgataaccggctgtggcagagccgcagaggcaatacgctacgttctttagggactcttacaatgacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

193

Amino Acids

22.13

Weight (kDa)

10.31

Isoelectric Point (pI)

58.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52880
fragaria_vesca	FvH4_7g30600 FvH4_7g30600
malus_domestica	MD01G1211200.v1.1
prunus_persica	Prupe.2G291600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G304000_v2.0.a1
pyrus_communis	pycom01g22170
rosa_chinensis	RchiOBHm_Chr1g0378761 RchiOBHm_Chr1g0379101 RchiOBHm_Chr1g0379281 RchiOBHm_Chr1g0379501 RchiOBHm_Chr1g0379511
rosa_laevigata	RLG00000026397
rosa_multiflora	Rmu_sc0031430.1_g000003 Rmu_sc0031430.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280130 Rroxscaffold_4G00280150
rosa_rugosa	Rorug01G0412300 Rorug01G0412400
rosa_samantha	Rh1AG434800 Rh1AG435100 Rh1BG392600 Rh1CG405300 Rh1DG423400
rosa_wichuraiana	Rw1G038010 Rw1G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	262, 381
AccIII	TCCGGA	1 cut(s)	50
AciI	CCGC	2 cut(s)	231, 535
AcsI	RAATTY	2 cut(s)	93, 499
AfaI	GTAC	1 cut(s)	435
AflIII	ACRYGT	1 cut(s)	436
AgsI	TTSAA	1 cut(s)	461
AjnI	CCWGG	2 cut(s)	450, 494
AluBI	AGCT	4 cut(s)	154, 159, 281, 389
AluI	AGCT	4 cut(s)	154, 159, 281, 389
Alw21I	GWGCWC	1 cut(s)	156
Alw26I	GTCTC	5 cut(s)	4, 210, 245, 277, 475
Aor13HI	TCCGGA	1 cut(s)	50
AoxI	GGCC	2 cut(s)	306, 491
ApeKI	GCWGC	2 cut(s)	278, 506
ApoI	RAATTY	2 cut(s)	93, 499
AspLEI	GCGC	4 cut(s)	176, 264, 381, 383
AspS9I	GGNCC	1 cut(s)	492
AsuHPI	GGTGA	2 cut(s)	220, 275
BaeGI	GKGCMC	1 cut(s)	192
BanII	GRGCYC	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	2 cut(s)	290, 518
BccI	CCATC	1 cut(s)	420
BciT130I	CCWGG	2 cut(s)	452, 496
BcoDI	GTCTC	5 cut(s)	4, 210, 245, 277, 475
BfoI	RGCGCY	1 cut(s)	177
BglI	GCCNNNNNGGC	1 cut(s)	540
BisI	GCNGC	3 cut(s)	279, 507, 535
BlpI	GCTNAGC	1 cut(s)	155
BlsI	GCNGC	3 cut(s)	280, 508, 536
Bme1390I	CCNGG	2 cut(s)	452, 496
BmgT120I	GGNCC	1 cut(s)	492
BmrFI	CCNGG	2 cut(s)	452, 496
BpiI	GAAGAC	1 cut(s)	263
BpmI	CTGGAG	2 cut(s)	185, 278
Bpu1102I	GCTNAGC	1 cut(s)	155
Bsa29I	ATCGAT	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	494
BsaWI	WCCGGW	1 cut(s)	50
Bse118I	RCCGGY	1 cut(s)	519
Bse1I	ACTGG	1 cut(s)	202
Bse3DI	GCAATG	1 cut(s)	366
BseAI	TCCGGA	1 cut(s)	50
BseBI	CCWGG	2 cut(s)	452, 496
BseCI	ATCGAT	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	494
BseMI	GCAATG	1 cut(s)	366
BseMII	CTCAG	4 cut(s)	90, 169, 181, 288
BseNI	ACTGG	1 cut(s)	202
BsePI	GCGCGC	1 cut(s)	379
BseRI	GAGGAG	2 cut(s)	278, 281
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	290, 518
Bsh1236I	CGCG	2 cut(s)	262, 381
BshFI	GGCC	2 cut(s)	308, 493
BshVI	ATCGAT	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	2 cut(s)	51, 520
BslFI	GGGAC	1 cut(s)	577
BsmAI	GTCTC	5 cut(s)	4, 210, 245, 277, 475
BsmBI	CGTCTC	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	577
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	2 cut(s)	308, 493
Bsp1286I	GDGCHC	2 cut(s)	156, 192
Bsp13I	TCCGGA	1 cut(s)	50
Bsp1407I	TGTACA	1 cut(s)	433
Bsp143I	GATC	1 cut(s)	40
Bsp1720I	GCTNAGC	1 cut(s)	155
BspACI	CCGC	2 cut(s)	231, 535
BspANI	GGCC	2 cut(s)	308, 493
BspCNI	CTCAG	4 cut(s)	91, 168, 180, 287
BspDI	ATCGAT	1 cut(s)	39
BspEI	TCCGGA	1 cut(s)	50
BspFNI	CGCG	2 cut(s)	262, 381
BsrDI	GCAATG	1 cut(s)	366
BsrFI	RCCGGY	1 cut(s)	519
BsrGI	TGTACA	1 cut(s)	433
BsrI	ACTGG	1 cut(s)	202
BssAI	RCCGGY	1 cut(s)	519
BssECI	CCNNGG	1 cut(s)	494
BssHII	GCGCGC	1 cut(s)	379
BssMI	GATC	1 cut(s)	40
Bst2UI	CCWGG	2 cut(s)	452, 496
Bst6I	CTCTTC	1 cut(s)	393
BstAPI	GCANNNNNTGC	1 cut(s)	365
BstAUI	TGTACA	1 cut(s)	433
BstC8I	GCNNGC	3 cut(s)	381, 391, 491
BstDEI	CTNAG	4 cut(s)	99, 155, 167, 274
BstFNI	CGCG	2 cut(s)	262, 381
BstH2I	RGCGCY	1 cut(s)	177
BstHHI	GCGC	4 cut(s)	176, 264, 381, 383
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	5 cut(s)	4, 210, 245, 277, 475
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 365, 540
BstNI	CCWGG	2 cut(s)	452, 496
BstNSI	RCATGY	1 cut(s)	440
BstSCI	CCNGG	2 cut(s)	450, 494
BstSLI	GKGCMC	1 cut(s)	192
BstUI	CGCG	2 cut(s)	262, 381
BstV1I	GCAGC	2 cut(s)	290, 518
BstV2I	GAAGAC	1 cut(s)	263
Bsu15I	ATCGAT	1 cut(s)	39
BsuRI	GGCC	2 cut(s)	308, 493
BsuTUI	ATCGAT	1 cut(s)	39
BtsI	GCAGTG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	271
Cac8I	GCNNGC	3 cut(s)	381, 391, 491
CfoI	GCGC	4 cut(s)	176, 264, 381, 383
Cfr10I	RCCGGY	1 cut(s)	519
Cfr13I	GGNCC	1 cut(s)	492
ClaI	ATCGAT	1 cut(s)	39
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	434
CviAII	CATG	1 cut(s)	437
CviJI	RGCY	9 cut(s)	154, 159, 281, 308, 338, 389, 493, 523, 534
CviKI_1	RGCY	9 cut(s)	154, 159, 281, 308, 338, 389, 493, 523, 534
CviQI	GTAC	1 cut(s)	434
DdeI	CTNAG	4 cut(s)	99, 155, 167, 274
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
Ecl136II	GAGCTC	1 cut(s)	154
Eco24I	GRGCYC	1 cut(s)	156
Eco53kI	GAGCTC	1 cut(s)	154
EcoICRI	GAGCTC	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	93
EcoRII	CCWGG	2 cut(s)	450, 494
EcoT38I	GRGCYC	1 cut(s)	156
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	1 cut(s)	440
FaiI	YATR	2 cut(s)	351, 438
FalI	AAGNNNNNCTT	4 cut(s)	317, 349, 414, 446
FaqI	GGGAC	1 cut(s)	577
FatI	CATG	1 cut(s)	436
Fnu4HI	GCNGC	3 cut(s)	279, 507, 535
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	3 cut(s)	279, 507, 535
GlaI	GCGC	4 cut(s)	175, 263, 380, 382
GluI	GCNGC	3 cut(s)	279, 507, 535
GsuI	CTGGAG	2 cut(s)	185, 278
HaeII	RGCGCY	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	308, 493
HapII	CCGG	2 cut(s)	51, 520
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	4 cut(s)	176, 264, 381, 383
Hin1II	CATG	1 cut(s)	440
Hin6I	GCGC	4 cut(s)	174, 262, 379, 381
HinP1I	GCGC	4 cut(s)	174, 262, 379, 381
HinfI	GANTC	8 cut(s)	4, 36, 47, 61, 111, 117, 196, 565
HpaII	CCGG	2 cut(s)	51, 520
HphI	GGTGA	2 cut(s)	220, 275
Hpy188I	TCNGA	3 cut(s)	9, 116, 170
Hpy188III	TCNNGA	7 cut(s)	44, 51, 98, 108, 121, 248, 295
HpyAV	CCTTC	2 cut(s)	92, 254
HpyCH4IV	ACGT	1 cut(s)	553
HpyCH4V	TGCA	3 cut(s)	147, 359, 506
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 365, 540
HpyF3I	CTNAG	4 cut(s)	99, 155, 167, 274
HpySE526I	ACGT	1 cut(s)	553
Hsp92II	CATG	1 cut(s)	440
HspAI	GCGC	4 cut(s)	174, 262, 379, 381
Kpn2I	TCCGGA	1 cut(s)	50
Kzo9I	GATC	1 cut(s)	40
Lsp1109I	GCAGC	2 cut(s)	290, 518
MaeII	ACGT	1 cut(s)	553
MaeIII	GTNAC	1 cut(s)	340
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	5 cut(s)	40, 205, 268, 340, 410
MhlI	GDGCHC	2 cut(s)	156, 192
MluCI	AATT	3 cut(s)	93, 162, 499
MlyI	GAGTC	1 cut(s)	559
MroI	TCCGGA	1 cut(s)	50
MseI	TTAA	1 cut(s)	161
MspI	CCGG	2 cut(s)	51, 520
MspR9I	CCNGG	2 cut(s)	452, 496
Mva1269I	GAATGC	1 cut(s)	361
MvaI	CCWGG	2 cut(s)	452, 496
MvnI	CGCG	2 cut(s)	262, 381
MwoI	GCNNNNNNNGC	3 cut(s)	275, 365, 540
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	1 cut(s)	440
NspI	RCATGY	1 cut(s)	440
PauI	GCGCGC	1 cut(s)	379
PciI	ACATGT	1 cut(s)	436
PctI	GAATGC	1 cut(s)	361
PfeI	GAWTC	7 cut(s)	4, 36, 47, 61, 111, 117, 196
PfoI	TCCNGGA	1 cut(s)	450
PkrI	GCNGC	3 cut(s)	280, 508, 536
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
PscI	ACATGT	1 cut(s)	436
Psp124BI	GAGCTC	1 cut(s)	156
Psp6I	CCWGG	2 cut(s)	450, 494
PspGI	CCWGG	2 cut(s)	450, 494
PspPI	GGNCC	1 cut(s)	492
PteI	GCGCGC	1 cut(s)	379
RsaI	GTAC	1 cut(s)	435
RsaNI	GTAC	1 cut(s)	434
SacI	GAGCTC	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	3 cut(s)	279, 507, 535
Sau3AI	GATC	1 cut(s)	40
Sau96I	GGNCC	1 cut(s)	492
SchI	GAGTC	1 cut(s)	559
ScrFI	CCNGG	2 cut(s)	452, 496
SduI	GDGCHC	2 cut(s)	156, 192
SetI	ASST	6 cut(s)	156, 161, 283, 288, 391, 556
Sse9I	AATT	3 cut(s)	93, 162, 499
SsiI	CCGC	2 cut(s)	231, 535
SstI	GAGCTC	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	450, 494
TaiI	ACGT	1 cut(s)	556
TaqI	TCGA	3 cut(s)	39, 91, 120
TasI	AATT	3 cut(s)	93, 162, 499
TatI	WGTACW	1 cut(s)	433
TauI	GCSGC	1 cut(s)	537
TfiI	GAWTC	7 cut(s)	4, 36, 47, 61, 111, 117, 196
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	1 cut(s)	271
TseI	GCWGC	2 cut(s)	278, 506
TspDTI	ATGAA	2 cut(s)	17, 269
TspRI	CASTG	1 cut(s)	271
XapI	RAATTY	2 cut(s)	93, 499
XceI	RCATGY	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.