Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004452

Physical Location & Seq

Genomic Coordinates Reverse (-)

65516875 .. 65518245

Gene Structure 1371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60281

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGATTGCTCACAAGAGGCGCGCTAAAGCTCGCCAAGAAGAGAATGTTGCCCATCTGCCACAAGATGTTCTTGTACATGTATTCAGTTTCCTGGATTTTCAATCTTTAGTCTCTGTTGGGCAAGTCTGCTGGCCCTGGAATTTTGCAGCAAGTGATAACCGGCTGTGGCAGAGGCAATACGCTACGTTCTTTAGGGACTCTTACAATGACTTGAATATCAAGGAACAGCATAGCAGTAGACAGGTTGAAGATGATAGTTATACGCTGTTTTGGAGAAAAGCCTTCAAAAGAGCATATAAAGCTTTCAAATACAAACTCATCAATTCTTACCATTGTATATCTGCTTGGATTTCAGGGAACAATTCATCAAAGAAATTAAAATCCAGTAGGGGATACTGTAGATACTGCAAGACAATTGTTTGGCTCGATAACATGAAATGTTTCAATGACCATATTGGACTAAATCCTGAAATTCAGAAAATTGACCCTGTATCACCTAGTCAGGTGGTTGACTATCTGTTGGAAGATTCTATACCAGTCAAATCTTCTTCAGAGAGCGATAGCGACAGTGATTCAGAAGCAGGGTCCTTTTCTAGGTTATGGGCCTATCGAAGACCCTTGACCAGTACTGAAGATATGCCTTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

216

Amino Acids

25.25

Weight (kDa)

8.73

Isoelectric Point (pI)

59.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	17 - 60	9.5e-16	F-box-like
F-box	PF00646	18 - 57	1.5e-08	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52880
fragaria_vesca	FvH4_7g30600 FvH4_7g30600
malus_domestica	MD01G1211200.v1.1
prunus_persica	Prupe.2G291600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G304000_v2.0.a1
pyrus_communis	pycom01g22170
rosa_chinensis	RchiOBHm_Chr1g0378761 RchiOBHm_Chr1g0379101 RchiOBHm_Chr1g0379281 RchiOBHm_Chr1g0379501 RchiOBHm_Chr1g0379511
rosa_laevigata	RLG00000026397
rosa_multiflora	Rmu_sc0031430.1_g000003 Rmu_sc0031430.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280130 Rroxscaffold_4G00280150
rosa_rugosa	Rorug01G0412300 Rorug01G0412400
rosa_samantha	Rh1AG434800 Rh1AG435100 Rh1BG392600 Rh1CG405300 Rh1DG423400
rosa_wichuraiana	Rw1G038010 Rw1G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	238
AccII	CGCG	1 cut(s)	21
AcsI	RAATTY	2 cut(s)	139, 471
AcuI	CTGAAG	2 cut(s)	534, 651
AfaI	GTAC	2 cut(s)	75, 628
AfiI	CCNNNNNNNGG	1 cut(s)	594
AflIII	ACRYGT	1 cut(s)	76
AgsI	TTSAA	6 cut(s)	101, 214, 248, 286, 307, 445
AjnI	CCWGG	2 cut(s)	90, 134
AluBI	AGCT	2 cut(s)	29, 302
AluI	AGCT	2 cut(s)	29, 302
Alw26I	GTCTC	1 cut(s)	115
AoxI	GGCC	2 cut(s)	131, 603
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	2 cut(s)	139, 471
Asp700I	GAANNNNTTC	1 cut(s)	440
AspLEI	GCGC	2 cut(s)	21, 23
AspS9I	GGNCC	3 cut(s)	132, 585, 603
AsuHPI	GGTGA	1 cut(s)	486
AvaII	GGWCC	1 cut(s)	585
BarI	GAAGNNNNNNTAC	2 cut(s)	516, 548
BbsI	GAAGAC	1 cut(s)	619
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	1 cut(s)	60
BciT130I	CCWGG	2 cut(s)	92, 136
BciVI	GTATCC	1 cut(s)	386
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	2 cut(s)	498, 594
BfmI	CTRYAG	1 cut(s)	397
BfuI	GTATCC	1 cut(s)	386
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BmcAI	AGTACT	1 cut(s)	628
Bme1390I	CCNGG	2 cut(s)	92, 136
Bme18I	GGWCC	1 cut(s)	585
BmgT120I	GGNCC	3 cut(s)	132, 585, 603
BmiI	GGNNCC	1 cut(s)	586
BmrFI	CCNGG	2 cut(s)	92, 136
BpiI	GAAGAC	1 cut(s)	619
BsaJI	CCNNGG	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	1 cut(s)	594
Bse118I	RCCGGY	1 cut(s)	159
Bse1I	ACTGG	3 cut(s)	384, 536, 624
BseBI	CCWGG	2 cut(s)	92, 136
BseDI	CCNNGG	1 cut(s)	134
BseLI	CCNNNNNNNGG	1 cut(s)	594
BseNI	ACTGG	3 cut(s)	384, 536, 624
BsePI	GCGCGC	1 cut(s)	19
BseXI	GCAGC	1 cut(s)	158
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	2 cut(s)	133, 605
BsiSI	CCGG	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	594
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	133, 605
Bsp1407I	TGTACA	1 cut(s)	73
BspANI	GGCC	2 cut(s)	133, 605
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	586
BsrFI	RCCGGY	1 cut(s)	159
BsrGI	TGTACA	1 cut(s)	73
BsrI	ACTGG	3 cut(s)	384, 536, 624
BssAI	RCCGGY	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	134
BssHII	GCGCGC	1 cut(s)	19
Bst2UI	CCWGG	2 cut(s)	92, 136
Bst4CI	ACNGT	2 cut(s)	398, 569
Bst6I	CTCTTC	1 cut(s)	33
BstAUI	TGTACA	1 cut(s)	73
BstC8I	GCNNGC	3 cut(s)	21, 31, 131
BstENI	CCTNNNNNAGG	1 cut(s)	592
BstFNI	CGCG	1 cut(s)	21
BstHHI	GCGC	2 cut(s)	21, 23
BstMAI	GTCTC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	2 cut(s)	92, 136
BstNSI	RCATGY	1 cut(s)	80
BstSCI	CCNGG	2 cut(s)	90, 134
BstSFI	CTRYAG	1 cut(s)	397
BstUI	CGCG	1 cut(s)	21
BstV1I	GCAGC	1 cut(s)	158
BstV2I	GAAGAC	1 cut(s)	619
BsuI	GTATCC	1 cut(s)	386
BsuRI	GGCC	2 cut(s)	133, 605
BtsIMutI	CAGTG	1 cut(s)	574
Cac8I	GCNNGC	3 cut(s)	21, 31, 131
CfoI	GCGC	2 cut(s)	21, 23
Cfr10I	RCCGGY	1 cut(s)	159
Cfr13I	GGNCC	3 cut(s)	132, 585, 603
Csp6I	GTAC	2 cut(s)	74, 627
CviAII	CATG	2 cut(s)	77, 433
CviJI	RGCY	7 cut(s)	29, 133, 163, 281, 302, 424, 605
CviKI_1	RGCY	7 cut(s)	29, 133, 163, 281, 302, 424, 605
CviQI	GTAC	2 cut(s)	74, 627
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	585
Eco57I	CTGAAG	2 cut(s)	534, 651
EcoNI	CCTNNNNNAGG	1 cut(s)	592
EcoO109I	RGGNCCY	1 cut(s)	585
EcoRII	CCWGG	2 cut(s)	90, 134
FaeI	CATG	2 cut(s)	80, 436
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	2 cut(s)	76, 432
FblI	GTMKAC	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	147
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	2 cut(s)	498, 594
GlaI	GCGC	2 cut(s)	20, 22
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	133, 605
HapII	CCGG	1 cut(s)	160
HhaI	GCGC	2 cut(s)	21, 23
Hin1II	CATG	2 cut(s)	80, 436
Hin6I	GCGC	2 cut(s)	19, 21
HinP1I	GCGC	2 cut(s)	19, 21
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HindIII	AAGCTT	1 cut(s)	300
HinfI	GANTC	3 cut(s)	197, 527, 572
HpaII	CCGG	1 cut(s)	160
HphI	GGTGA	1 cut(s)	486
Hpy166II	GTNNAC	2 cut(s)	239, 511
Hpy188I	TCNGA	3 cut(s)	477, 553, 577
Hpy188III	TCNNGA	1 cut(s)	467
Hpy8I	GTNNAC	2 cut(s)	239, 511
HpyAV	CCTTC	1 cut(s)	292
HpyCH4III	ACNGT	2 cut(s)	398, 569
HpyCH4IV	ACGT	1 cut(s)	185
HpyCH4V	TGCA	2 cut(s)	146, 408
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpySE526I	ACGT	1 cut(s)	185
Hsp92II	CATG	2 cut(s)	80, 436
HspAI	GCGC	2 cut(s)	19, 21
Lsp1109I	GCAGC	1 cut(s)	158
MaeI	CTAG	2 cut(s)	498, 594
MaeII	ACGT	1 cut(s)	185
MboII	GAAGA	7 cut(s)	50, 260, 536, 537, 540, 624, 644
MfeI	CAATTG	1 cut(s)	414
MluCI	AATT	7 cut(s)	139, 322, 361, 374, 414, 471, 480
MlyI	GAGTC	1 cut(s)	191
MmeI	TCCRAC	1 cut(s)	501
MnlI	CCTC	2 cut(s)	9, 165
MroXI	GAANNNNTTC	1 cut(s)	440
MseI	TTAA	1 cut(s)	377
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	2 cut(s)	92, 136
MunI	CAATTG	1 cut(s)	414
MvaI	CCWGG	2 cut(s)	92, 136
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	1 cut(s)	299
NlaIII	CATG	2 cut(s)	80, 436
NlaIV	GGNNCC	1 cut(s)	586
NspI	RCATGY	1 cut(s)	80
PauI	GCGCGC	1 cut(s)	19
PciI	ACATGT	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	440
PfeI	GAWTC	2 cut(s)	527, 572
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	191
PpsI	GAGTC	1 cut(s)	191
PpuMI	RGGWCCY	1 cut(s)	585
PscI	ACATGT	1 cut(s)	76
Psp5II	RGGWCCY	1 cut(s)	585
Psp6I	CCWGG	2 cut(s)	90, 134
PspGI	CCWGG	2 cut(s)	90, 134
PspN4I	GGNNCC	1 cut(s)	586
PspPI	GGNCC	3 cut(s)	132, 585, 603
PspPPI	RGGWCCY	1 cut(s)	585
PteI	GCGCGC	1 cut(s)	19
RsaI	GTAC	2 cut(s)	75, 628
RsaNI	GTAC	2 cut(s)	74, 627
SaqAI	TTAA	1 cut(s)	377
SatI	GCNGC	1 cut(s)	147
Sau96I	GGNCC	3 cut(s)	132, 585, 603
ScaI	AGTACT	1 cut(s)	628
SchI	GAGTC	1 cut(s)	191
ScrFI	CCNGG	2 cut(s)	92, 136
SetI	ASST	7 cut(s)	31, 188, 246, 304, 499, 507, 599
SfcI	CTRYAG	1 cut(s)	397
SinI	GGWCC	1 cut(s)	585
Sse9I	AATT	7 cut(s)	139, 322, 361, 374, 414, 471, 480
SspMI	CTAG	2 cut(s)	498, 594
StyD4I	CCNGG	2 cut(s)	90, 134
TaaI	ACNGT	2 cut(s)	398, 569
TaiI	ACGT	1 cut(s)	188
TaqI	TCGA	2 cut(s)	426, 610
TasI	AATT	7 cut(s)	139, 322, 361, 374, 414, 471, 480
TatI	WGTACW	2 cut(s)	73, 626
TfiI	GAWTC	2 cut(s)	527, 572
Tru1I	TTAA	1 cut(s)	377
Tru9I	TTAA	1 cut(s)	377
TscAI	CASTG	1 cut(s)	574
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	2 cut(s)	354, 449
TspRI	CASTG	1 cut(s)	574
VpaK11BI	GGWCC	1 cut(s)	585
XagI	CCTNNNNNAGG	1 cut(s)	592
XapI	RAATTY	2 cut(s)	139, 471
XceI	RCATGY	1 cut(s)	80
XmiI	GTMKAC	1 cut(s)	238
XmnI	GAANNNNTTC	1 cut(s)	440
XspI	CTAG	2 cut(s)	498, 594
ZrmI	AGTACT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.