Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004452

Physical Location & Seq

Genomic Coordinates Reverse (-)

66013941 .. 66016093

Gene Structure 2153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG434800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCTATATATAGACTTTTTACAACTATATACCCTTTAGTCTGCAAAGAGCTCAGCTTAATTCTCAGAGGCGCTTACAGAAAAGTGCCCAAGAATCTCCAGTCTCTTATCTTCCAAGATACCCTCACCGCCTTTCGTCTCCTTCCTGAAATGAAGATGCGCAGTGCTGTCTCAGCAGCTCACCTCCTCCTCCAGAGCGTTGAGGCCACTTTGCCGAAGCAAAAGAAGAACTTGGCTGTTACAGAATATAAGAATGCAATGATTGCTCACAAGAGGCGCGCTAAAGCTCGCCAAGAAGAGAATGTTGCCCATCTGCCACAAGATGTTCTTGTACATGTATTCAGTTTCCTGGATTTTCAATCTTTAGTCTCTGTTGGGCTAGACTGCTGGCCATGGAATTTTGCAGCAAGTGATAACCGGCTGTGGCAGAGGCAATACGCTACATTCTTTAGGGACTCTTACAATGACTTGAATATCAAGGAACAGCATACCAGTAGACAGGTTGAAGATGATAGTTATACGCTGTTTTGGAGAAAAGCCTTCAAAAGAGCATATAAAGGGAATAATTCATCAAAGAAATTAAAATCCAGTAGGGGATACTGTAGATACTGCAAGACAATTGTTTGGCTCGATAACATGAAATGTTTCAATGACCATATTGGACTAAATCCTGAAATTCAGAAAATTGACCCTGTATCACCTAGTCAGGTGGTTGACTATCTGTTGGAAGATTCTATATCAGTCAAATCTTCTTCAGAGAGTGATAGCGACAGTGATTCAGAAGCAGGGTCCTTTTCTAGGTTATGGGCCTATCGAAGACCCTTGACCAGTACTGAAGGTATGCCTTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

284

Amino Acids

32.86

Weight (kDa)

9.31

Isoelectric Point (pI)

57.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At5g52880_ARM	PF24104	11 - 92	2.2e-35	F-box protein At5g52880 ARM repeat
F-box-like	PF12937	103 - 146	1.8e-12	F-box-like
F-box	PF00646	104 - 143	1.7e-06	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52880
fragaria_vesca	FvH4_7g30600 FvH4_7g30600
malus_domestica	MD01G1211200.v1.1
prunus_persica	Prupe.2G291600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G304000_v2.0.a1
pyrus_communis	pycom01g22170
rosa_chinensis	RchiOBHm_Chr1g0378761 RchiOBHm_Chr1g0379101 RchiOBHm_Chr1g0379281 RchiOBHm_Chr1g0379501 RchiOBHm_Chr1g0379511
rosa_laevigata	RLG00000026397
rosa_multiflora	Rmu_sc0031430.1_g000003 Rmu_sc0031430.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280130 Rroxscaffold_4G00280150
rosa_rugosa	Rorug01G0412300 Rorug01G0412400
rosa_samantha	Rh1AG434800 Rh1AG435100 Rh1BG392600 Rh1CG405300 Rh1DG423400
rosa_wichuraiana	Rw1G038010 Rw1G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	496
AccII	CGCG	1 cut(s)	279
AciI	CCGC	1 cut(s)	129
AcoI	YGGCCR	1 cut(s)	389
AcsI	RAATTY	2 cut(s)	397, 675
AcuI	CTGAAG	2 cut(s)	738, 855
AfaI	GTAC	2 cut(s)	333, 832
AfiI	CCNNNNNNNGG	1 cut(s)	798
AflIII	ACRYGT	1 cut(s)	334
AgsI	TTSAA	5 cut(s)	359, 472, 506, 544, 649
AjnI	CCWGG	1 cut(s)	348
AluBI	AGCT	4 cut(s)	52, 57, 179, 287
AluI	AGCT	4 cut(s)	52, 57, 179, 287
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	4 cut(s)	108, 143, 175, 373
AoxI	GGCC	3 cut(s)	204, 389, 807
ApeKI	GCWGC	2 cut(s)	176, 404
ApoI	RAATTY	2 cut(s)	397, 675
Asp700I	GAANNNNTTC	1 cut(s)	644
AspLEI	GCGC	4 cut(s)	74, 162, 279, 281
AspS9I	GGNCC	2 cut(s)	789, 807
AsuHPI	GGTGA	3 cut(s)	118, 173, 690
AvaII	GGWCC	1 cut(s)	789
BaeGI	GKGCMC	1 cut(s)	90
BalI	TGGCCA	1 cut(s)	391
BanII	GRGCYC	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	823
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	188, 416
BccI	CCATC	1 cut(s)	318
BciT130I	CCWGG	1 cut(s)	350
BciVI	GTATCC	1 cut(s)	590
BcoDI	GTCTC	4 cut(s)	108, 143, 175, 373
BfaI	CTAG	3 cut(s)	380, 702, 798
BfmI	CTRYAG	1 cut(s)	601
BfoI	RGCGCY	1 cut(s)	75
BfuI	GTATCC	1 cut(s)	590
BisI	GCNGC	2 cut(s)	177, 405
BlpI	GCTNAGC	1 cut(s)	53
BlsI	GCNGC	2 cut(s)	178, 406
BmcAI	AGTACT	1 cut(s)	832
Bme1390I	CCNGG	1 cut(s)	350
Bme18I	GGWCC	1 cut(s)	789
BmgT120I	GGNCC	2 cut(s)	789, 807
BmiI	GGNNCC	1 cut(s)	790
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	147
BpiI	GAAGAC	1 cut(s)	823
BpmI	CTGGAG	2 cut(s)	83, 176
Bpu1102I	GCTNAGC	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	392
Bsc4I	CCNNNNNNNGG	1 cut(s)	798
Bse118I	RCCGGY	1 cut(s)	417
Bse1I	ACTGG	4 cut(s)	100, 492, 588, 828
Bse3DI	GCAATG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	392
BseLI	CCNNNNNNNGG	1 cut(s)	798
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	3 cut(s)	67, 79, 186
BseNI	ACTGG	4 cut(s)	100, 492, 588, 828
BsePI	GCGCGC	1 cut(s)	277
BseRI	GAGGAG	2 cut(s)	176, 179
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	2 cut(s)	188, 416
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	3 cut(s)	206, 391, 809
BsiHKAI	GWGCWC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	418
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	1 cut(s)	798
BsmAI	GTCTC	4 cut(s)	108, 143, 175, 373
BsmBI	CGTCTC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	467
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	3 cut(s)	206, 391, 809
Bsp1286I	GDGCHC	2 cut(s)	54, 90
Bsp1407I	TGTACA	1 cut(s)	331
Bsp1720I	GCTNAGC	1 cut(s)	53
Bsp19I	CCATGG	1 cut(s)	392
BspACI	CCGC	1 cut(s)	129
BspANI	GGCC	3 cut(s)	206, 391, 809
BspCNI	CTCAG	3 cut(s)	66, 78, 185
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	790
BsrDI	GCAATG	1 cut(s)	264
BsrFI	RCCGGY	1 cut(s)	417
BsrGI	TGTACA	1 cut(s)	331
BsrI	ACTGG	4 cut(s)	100, 492, 588, 828
BssAI	RCCGGY	1 cut(s)	417
BssECI	CCNNGG	1 cut(s)	392
BssHII	GCGCGC	1 cut(s)	277
BssT1I	CCWWGG	1 cut(s)	392
Bst2UI	CCWGG	1 cut(s)	350
Bst4CI	ACNGT	2 cut(s)	602, 773
Bst6I	CTCTTC	1 cut(s)	291
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstAUI	TGTACA	1 cut(s)	331
BstC8I	GCNNGC	3 cut(s)	279, 289, 389
BstDEI	CTNAG	3 cut(s)	53, 65, 172
BstDSI	CCRYGG	1 cut(s)	392
BstENI	CCTNNNNNAGG	1 cut(s)	796
BstFNI	CGCG	1 cut(s)	279
BstH2I	RGCGCY	1 cut(s)	75
BstHHI	GCGC	4 cut(s)	74, 162, 279, 281
BstMAI	GTCTC	4 cut(s)	108, 143, 175, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 263
BstNI	CCWGG	1 cut(s)	350
BstNSI	RCATGY	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	601
BstSLI	GKGCMC	1 cut(s)	90
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	2 cut(s)	188, 416
BstV2I	GAAGAC	1 cut(s)	823
BsuI	GTATCC	1 cut(s)	590
BsuRI	GGCC	3 cut(s)	206, 391, 809
BtgI	CCRYGG	1 cut(s)	392
BtsI	GCAGTG	1 cut(s)	169
BtsIMutI	CAGTG	2 cut(s)	169, 778
Cac8I	GCNNGC	3 cut(s)	279, 289, 389
CfoI	GCGC	4 cut(s)	74, 162, 279, 281
Cfr10I	RCCGGY	1 cut(s)	417
Cfr13I	GGNCC	2 cut(s)	789, 807
Csp6I	GTAC	2 cut(s)	332, 831
CviAII	CATG	3 cut(s)	335, 393, 637
CviQI	GTAC	2 cut(s)	332, 831
DdeI	CTNAG	3 cut(s)	53, 65, 172
EaeI	YGGCCR	1 cut(s)	389
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Ecl136II	GAGCTC	1 cut(s)	52
Eco130I	CCWWGG	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	789
Eco53kI	GAGCTC	1 cut(s)	52
Eco57I	CTGAAG	2 cut(s)	738, 855
EcoICRI	GAGCTC	1 cut(s)	52
EcoNI	CCTNNNNNAGG	1 cut(s)	796
EcoO109I	RGGNCCY	1 cut(s)	789
EcoRII	CCWGG	1 cut(s)	348
EcoT14I	CCWWGG	1 cut(s)	392
EcoT38I	GRGCYC	1 cut(s)	54
ErhI	CCWWGG	1 cut(s)	392
Esp3I	CGTCTC	1 cut(s)	143
FaeI	CATG	3 cut(s)	338, 396, 640
FalI	AAGNNNNNCTT	4 cut(s)	215, 247, 312, 344
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	3 cut(s)	334, 392, 636
FblI	GTMKAC	1 cut(s)	496
Fnu4HI	GCNGC	2 cut(s)	177, 405
FriOI	GRGCYC	1 cut(s)	54
Fsp4HI	GCNGC	2 cut(s)	177, 405
FspBI	CTAG	3 cut(s)	380, 702, 798
FspI	TGCGCA	1 cut(s)	161
GlaI	GCGC	4 cut(s)	73, 161, 278, 280
GluI	GCNGC	2 cut(s)	177, 405
GsuI	CTGGAG	2 cut(s)	83, 176
HaeII	RGCGCY	1 cut(s)	75
HaeIII	GGCC	3 cut(s)	206, 391, 809
HapII	CCGG	1 cut(s)	418
HhaI	GCGC	4 cut(s)	74, 162, 279, 281
Hin1II	CATG	3 cut(s)	338, 396, 640
Hin6I	GCGC	4 cut(s)	72, 160, 277, 279
HinP1I	GCGC	4 cut(s)	72, 160, 277, 279
HincII	GTYRAC	1 cut(s)	715
HindII	GTYRAC	1 cut(s)	715
HinfI	GANTC	4 cut(s)	94, 455, 731, 776
HpaII	CCGG	1 cut(s)	418
HphI	GGTGA	3 cut(s)	118, 173, 690
Hpy166II	GTNNAC	2 cut(s)	497, 715
Hpy188I	TCNGA	4 cut(s)	68, 681, 757, 781
Hpy188III	TCNNGA	3 cut(s)	146, 193, 671
Hpy8I	GTNNAC	2 cut(s)	497, 715
HpyAV	CCTTC	3 cut(s)	152, 550, 830
HpyCH4III	ACNGT	2 cut(s)	602, 773
HpyCH4V	TGCA	4 cut(s)	45, 257, 404, 612
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 263
HpyF3I	CTNAG	3 cut(s)	53, 65, 172
Hsp92II	CATG	3 cut(s)	338, 396, 640
HspAI	GCGC	4 cut(s)	72, 160, 277, 279
Lsp1109I	GCAGC	2 cut(s)	188, 416
LweI	GCATC	1 cut(s)	147
MaeI	CTAG	3 cut(s)	380, 702, 798
MaeIII	GTNAC	1 cut(s)	238
MboII	GAAGA	9 cut(s)	103, 166, 238, 308, 518, 740, 741, 744, 828
MfeI	CAATTG	1 cut(s)	618
MhlI	GDGCHC	2 cut(s)	54, 90
MlsI	TGGCCA	1 cut(s)	391
MluCI	AATT	7 cut(s)	60, 397, 565, 578, 618, 675, 684
MluNI	TGGCCA	1 cut(s)	391
MlyI	GAGTC	1 cut(s)	449
MmeI	TCCRAC	1 cut(s)	705
MnlI	CCTC	8 cut(s)	62, 134, 194, 196, 197, 200, 267, 423
Mox20I	TGGCCA	1 cut(s)	391
MroXI	GAANNNNTTC	1 cut(s)	644
MscI	TGGCCA	1 cut(s)	391
MseI	TTAA	2 cut(s)	59, 581
Msp20I	TGGCCA	1 cut(s)	391
MspI	CCGG	1 cut(s)	418
MspR9I	CCNGG	1 cut(s)	350
MunI	CAATTG	1 cut(s)	618
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	350
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	2 cut(s)	173, 263
NcoI	CCATGG	1 cut(s)	392
NlaIII	CATG	3 cut(s)	338, 396, 640
NlaIV	GGNNCC	1 cut(s)	790
NsbI	TGCGCA	1 cut(s)	161
NspI	RCATGY	1 cut(s)	338
PauI	GCGCGC	1 cut(s)	277
PciI	ACATGT	1 cut(s)	334
PctI	GAATGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	644
PfeI	GAWTC	3 cut(s)	94, 731, 776
PfoI	TCCNGGA	1 cut(s)	348
PkrI	GCNGC	2 cut(s)	178, 406
PleI	GAGTC	1 cut(s)	449
PpsI	GAGTC	1 cut(s)	449
PpuMI	RGGWCCY	1 cut(s)	789
PscI	ACATGT	1 cut(s)	334
Psp124BI	GAGCTC	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	789
Psp6I	CCWGG	1 cut(s)	348
PspGI	CCWGG	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	790
PspPI	GGNCC	2 cut(s)	789, 807
PspPPI	RGGWCCY	1 cut(s)	789
PteI	GCGCGC	1 cut(s)	277
RsaI	GTAC	2 cut(s)	333, 832
RsaNI	GTAC	2 cut(s)	332, 831
SacI	GAGCTC	1 cut(s)	54
SaqAI	TTAA	2 cut(s)	59, 581
SatI	GCNGC	2 cut(s)	177, 405
Sau96I	GGNCC	2 cut(s)	789, 807
ScaI	AGTACT	1 cut(s)	832
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	54, 90
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	1 cut(s)	601
SinI	GGWCC	1 cut(s)	789
Sse9I	AATT	7 cut(s)	60, 397, 565, 578, 618, 675, 684
SsiI	CCGC	1 cut(s)	129
SspMI	CTAG	3 cut(s)	380, 702, 798
SstI	GAGCTC	1 cut(s)	54
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	2 cut(s)	602, 773
TaqI	TCGA	2 cut(s)	630, 814
TasI	AATT	7 cut(s)	60, 397, 565, 578, 618, 675, 684
TatI	WGTACW	2 cut(s)	331, 830
TfiI	GAWTC	3 cut(s)	94, 731, 776
Tru1I	TTAA	2 cut(s)	59, 581
Tru9I	TTAA	2 cut(s)	59, 581
TscAI	CASTG	2 cut(s)	169, 778
TseI	GCWGC	2 cut(s)	176, 404
TspDTI	ATGAA	3 cut(s)	167, 558, 653
TspRI	CASTG	2 cut(s)	169, 778
VpaK11BI	GGWCC	1 cut(s)	789
XagI	CCTNNNNNAGG	1 cut(s)	796
XapI	RAATTY	2 cut(s)	397, 675
XceI	RCATGY	1 cut(s)	338
XmiI	GTMKAC	1 cut(s)	496
XmnI	GAANNNNTTC	1 cut(s)	644
XspI	CTAG	3 cut(s)	380, 702, 798
ZrmI	AGTACT	1 cut(s)	832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.