Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004452

Physical Location & Seq

Genomic Coordinates Reverse (-)

19880635 .. 19882583

Gene Structure 1949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g22170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGAAACTTGTTGGTCCTTCTTAGGTAGCCCAATCAAATTATTAGAGAATTCCTTCCCCTCTTCTCTTTCTCCTTCTTCCTTTTTTTCTCCATTGAATCTCAGAGGGAGAAGCATGTCAAAGCCACTGGAGAGATACCAAAAACTCGTCCTCAAAGAGTCATTGCCCAAAATCCACAGGTACCCTTTTGCCTGCAGAGAGCTCAGCTTAATCCTCAGAGGCGCTTACAAGAAATTCCCCAAGAATCTCCAATCTCTCATCTTCCAAGACACTCTCACGGCCTTTCGTCTCCTTCCCGAAATGCAGACGCGCAATGCTGTTTTGGCAGCCCATCTCCTCCTCCAGAGTGCCGAGGCCACGTTGCCGAAGCAAAAGAAGAATCTGGCTGTCGCAGAATACAAGAACGCAATGGTTGCTCATAAGAGGCGCACTAAAGCACGCCAAGAAGAAAAGGTTTCGGGTTCAACCCAGCTGCCACAAGATGTTCTTGTTCACATATTTGGTTTCCTTGATATGCAATCCTTGGCCTCTGTTGGACTAGTCTGCTGGTCGTGGAACATAGCGGCAAGTGATAACCATCTGTGGGAGACACAATACACTACTTTCTTCAGGAATTCTGAGGATGATAAGCTGATTAAGGCTCGGAAAATTAGTGGTCGACAGGTTGAAGATGAAGAAGGGTACACACTATTTTGGAAAGAAGCCTTCAAAAGGGCATATTTAGGCAGCTCGTCGAAGAAATTGAAATCCGGTAGGGGATACTGTAGAGACTGCAACACGATTGTTTGGCTTGACAACATGAAATGTTCAAATGAACATAGGGGACAAAATTCGGAAAACCAGCAAATTAAGCCCGTGTCACCAAGTCAGGTGGTTGAGTATCTGTTGGATGATTCTATATCAATGGTATCTTCTTCGGACAGTGATAGCGATTCAGATGAAGGGCCATTTTCCAGGTTATGGGCCTACAGAAGACCCTTTAGCAAGAGTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

332

Amino Acids

37.89

Weight (kDa)

9.36

Isoelectric Point (pI)

55.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At5g52880_ARM	PF24104	44 - 142	6.7e-43	F-box protein At5g52880 ARM repeat
F-box-like	PF12937	157 - 199	1.3e-14	F-box-like
F-box	PF00646	157 - 196	4.7e-08	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52880
fragaria_vesca	FvH4_7g30600 FvH4_7g30600
malus_domestica	MD01G1211200.v1.1
prunus_persica	Prupe.2G291600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G304000_v2.0.a1
pyrus_communis	pycom01g22170
rosa_chinensis	RchiOBHm_Chr1g0378761 RchiOBHm_Chr1g0379101 RchiOBHm_Chr1g0379281 RchiOBHm_Chr1g0379501 RchiOBHm_Chr1g0379511
rosa_laevigata	RLG00000026397
rosa_multiflora	Rmu_sc0031430.1_g000003 Rmu_sc0031430.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280130 Rroxscaffold_4G00280150
rosa_rugosa	Rorug01G0412300 Rorug01G0412400
rosa_samantha	Rh1AG434800 Rh1AG435100 Rh1BG392600 Rh1CG405300 Rh1DG423400
rosa_wichuraiana	Rw1G038010 Rw1G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	180
AccB1I	GGYRCC	1 cut(s)	180
AccB7I	CCANNNNNTGG	1 cut(s)	960
AccI	GTMKAC	1 cut(s)	658
AccII	CGCG	1 cut(s)	310
AciI	CCGC	1 cut(s)	563
AcsI	RAATTY	4 cut(s)	49, 233, 613, 829
AcuI	CTGAAG	1 cut(s)	592
AfaI	GTAC	2 cut(s)	182, 683
AfiI	CCNNNNNNNGG	3 cut(s)	583, 711, 960
AgsI	TTSAA	6 cut(s)	97, 465, 668, 709, 745, 810
AhlI	ACTAGT	1 cut(s)	538
AjnI	CCWGG	1 cut(s)	953
AluBI	AGCT	5 cut(s)	202, 207, 472, 631, 729
AluI	AGCT	5 cut(s)	202, 207, 472, 631, 729
Alw21I	GWGCWC	1 cut(s)	204
Alw26I	GTCTC	3 cut(s)	293, 581, 762
AoxI	GGCC	5 cut(s)	279, 354, 525, 944, 963
ApeKI	GCWGC	3 cut(s)	326, 472, 726
ApoI	RAATTY	4 cut(s)	49, 233, 613, 829
Asp700I	GAANNNNTTC	1 cut(s)	53
Asp718I	GGTACC	1 cut(s)	180
AspLEI	GCGC	3 cut(s)	224, 312, 429
AspS9I	GGNCC	3 cut(s)	15, 944, 963
AsuHPI	GGTGA	1 cut(s)	852
AvaII	GGWCC	1 cut(s)	15
BanI	GGYRCC	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	204
BbsI	GAAGAC	1 cut(s)	979
Bbv12I	GWGCWC	1 cut(s)	204
BbvI	GCAGC	3 cut(s)	338, 459, 738
BccI	CCATC	2 cut(s)	339, 585
BceAI	ACGGC	1 cut(s)	294
BciT130I	CCWGG	1 cut(s)	955
BciVI	GTATCC	1 cut(s)	752
BcoDI	GTCTC	3 cut(s)	293, 581, 762
BcuI	ACTAGT	1 cut(s)	538
BfaI	CTAG	1 cut(s)	539
BfmI	CTRYAG	3 cut(s)	193, 763, 967
BfoI	RGCGCY	1 cut(s)	225
BfuI	GTATCC	1 cut(s)	752
BisI	GCNGC	4 cut(s)	327, 473, 564, 727
BlpI	GCTNAGC	1 cut(s)	203
BlsI	GCNGC	4 cut(s)	328, 474, 565, 728
Bme1390I	CCNGG	1 cut(s)	955
Bme18I	GGWCC	1 cut(s)	15
BmgT120I	GGNCC	3 cut(s)	15, 944, 963
BmiI	GGNNCC	1 cut(s)	182
BmrFI	CCNGG	1 cut(s)	955
BpiI	GAAGAC	1 cut(s)	979
BpmI	CTGGAG	2 cut(s)	149, 326
Bpu1102I	GCTNAGC	1 cut(s)	203
BsaBI	GATNNNNATC	1 cut(s)	576
BsaJI	CCNNGG	2 cut(s)	351, 522
BsaWI	WCCGGW	1 cut(s)	749
Bsc4I	CCNNNNNNNGG	3 cut(s)	583, 711, 960
Bse1I	ACTGG	1 cut(s)	132
Bse3DI	GCAATG	3 cut(s)	161, 319, 414
Bse8I	GATNNNNATC	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	955
BseDI	CCNNGG	2 cut(s)	351, 522
BseGI	GGATG	2 cut(s)	628, 895
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	3 cut(s)	583, 711, 960
BseMI	GCAATG	3 cut(s)	161, 319, 414
BseMII	CTCAG	4 cut(s)	115, 217, 229, 609
BseNI	ACTGG	1 cut(s)	132
BseRI	GAGGAG	2 cut(s)	326, 329
BseXI	GCAGC	3 cut(s)	338, 459, 738
BseYI	CCCAGC	1 cut(s)	468
Bsh1236I	CGCG	1 cut(s)	310
BshFI	GGCC	5 cut(s)	281, 356, 527, 946, 965
BshNI	GGYRCC	1 cut(s)	180
BsiHKAI	GWGCWC	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	750
BslFI	GGGAC	1 cut(s)	837
BslI	CCNNNNNNNGG	3 cut(s)	583, 711, 960
BsmAI	GTCTC	3 cut(s)	293, 581, 762
BsmBI	CGTCTC	1 cut(s)	293
BsmFI	GGGAC	1 cut(s)	837
BsnI	GGCC	5 cut(s)	281, 356, 527, 946, 965
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp1720I	GCTNAGC	1 cut(s)	203
BspACI	CCGC	1 cut(s)	563
BspANI	GGCC	5 cut(s)	281, 356, 527, 946, 965
BspCNI	CTCAG	4 cut(s)	114, 216, 228, 610
BspFNI	CGCG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	182
BspMAI	CTGCAG	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	180
BsrDI	GCAATG	3 cut(s)	161, 319, 414
BsrI	ACTGG	1 cut(s)	132
BssECI	CCNNGG	2 cut(s)	351, 522
BssT1I	CCWWGG	1 cut(s)	522
Bst2UI	CCWGG	1 cut(s)	955
Bst4CI	ACNGT	2 cut(s)	764, 923
Bst6I	CTCTTC	1 cut(s)	67
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstC8I	GCNNGC	2 cut(s)	193, 439
BstDEI	CTNAG	5 cut(s)	22, 101, 203, 215, 618
BstENI	CCTNNNNNAGG	1 cut(s)	709
BstF5I	GGATG	2 cut(s)	628, 895
BstFNI	CGCG	1 cut(s)	310
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	3 cut(s)	224, 312, 429
BstMAI	GTCTC	3 cut(s)	293, 581, 762
BstMWI	GCNNNNNNNGC	3 cut(s)	323, 413, 850
BstNI	CCWGG	1 cut(s)	955
BstNSI	RCATGY	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	953
BstSFI	CTRYAG	3 cut(s)	193, 763, 967
BstUI	CGCG	1 cut(s)	310
BstV1I	GCAGC	3 cut(s)	338, 459, 738
BstV2I	GAAGAC	1 cut(s)	979
BsuI	GTATCC	1 cut(s)	752
BsuRI	GGCC	5 cut(s)	281, 356, 527, 946, 965
BtsCI	GGATG	2 cut(s)	628, 895
BtsIMutI	CAGTG	2 cut(s)	125, 928
Cac8I	GCNNGC	2 cut(s)	193, 439
CfoI	GCGC	3 cut(s)	224, 312, 429
Cfr13I	GGNCC	3 cut(s)	15, 944, 963
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	2 cut(s)	181, 682
CspCI	CAANNNNNGTGG	2 cut(s)	852, 887
CviAII	CATG	2 cut(s)	115, 799
CviQI	GTAC	2 cut(s)	181, 682
DdeI	CTNAG	5 cut(s)	22, 101, 203, 215, 618
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
Ecl136II	GAGCTC	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	522
Eco24I	GRGCYC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	15
Eco53kI	GAGCTC	1 cut(s)	202
Eco57I	CTGAAG	1 cut(s)	592
EcoICRI	GAGCTC	1 cut(s)	202
EcoNI	CCTNNNNNAGG	1 cut(s)	709
EcoRI	GAATTC	2 cut(s)	49, 613
EcoRII	CCWGG	1 cut(s)	953
EcoT14I	CCWWGG	1 cut(s)	522
EcoT38I	GRGCYC	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	522
Esp3I	CGTCTC	1 cut(s)	293
FaeI	CATG	2 cut(s)	118, 802
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FaqI	GGGAC	1 cut(s)	837
FatI	CATG	2 cut(s)	114, 798
FblI	GTMKAC	1 cut(s)	658
Fnu4HI	GCNGC	4 cut(s)	327, 473, 564, 727
FokI	GGATG	2 cut(s)	635, 902
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	4 cut(s)	327, 473, 564, 727
FspBI	CTAG	1 cut(s)	539
GlaI	GCGC	3 cut(s)	223, 311, 428
GluI	GCNGC	4 cut(s)	327, 473, 564, 727
GsaI	CCCAGC	1 cut(s)	472
GsuI	CTGGAG	2 cut(s)	149, 326
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	5 cut(s)	281, 356, 527, 946, 965
HapII	CCGG	1 cut(s)	750
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	3 cut(s)	224, 312, 429
Hin1II	CATG	2 cut(s)	118, 802
Hin6I	GCGC	3 cut(s)	222, 310, 427
HinP1I	GCGC	3 cut(s)	222, 310, 427
HincII	GTYRAC	1 cut(s)	659
HindII	GTYRAC	1 cut(s)	659
HinfI	GANTC	7 cut(s)	97, 158, 244, 379, 893, 932, 988
HpaII	CCGG	1 cut(s)	750
HphI	GGTGA	1 cut(s)	852
Hpy166II	GTNNAC	3 cut(s)	493, 659, 684
Hpy188I	TCNGA	7 cut(s)	104, 218, 619, 645, 835, 919, 937
Hpy188III	TCNNGA	3 cut(s)	296, 343, 610
Hpy8I	GTNNAC	3 cut(s)	493, 659, 684
Hpy99I	CGWCG	1 cut(s)	736
HpyAV	CCTTC	7 cut(s)	28, 64, 84, 302, 671, 715, 935
HpyCH4III	ACNGT	2 cut(s)	764, 923
HpyCH4IV	ACGT	1 cut(s)	359
HpyCH4V	TGCA	4 cut(s)	195, 304, 517, 774
HpyF10VI	GCNNNNNNNGC	3 cut(s)	323, 413, 850
HpyF3I	CTNAG	5 cut(s)	22, 101, 203, 215, 618
HpySE526I	ACGT	1 cut(s)	359
Hsp92II	CATG	2 cut(s)	118, 802
HspAI	GCGC	3 cut(s)	222, 310, 427
KpnI	GGTACC	1 cut(s)	184
Lsp1109I	GCAGC	3 cut(s)	338, 459, 738
MaeI	CTAG	1 cut(s)	539
MaeII	ACGT	1 cut(s)	359
MaeIII	GTNAC	1 cut(s)	858
MhlI	GDGCHC	1 cut(s)	204
MluCI	AATT	8 cut(s)	38, 49, 233, 613, 648, 740, 829, 846
MlyI	GAGTC	1 cut(s)	167
MmeI	TCCRAC	2 cut(s)	514, 867
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	3 cut(s)	209, 636, 849
MspA1I	CMGCKG	1 cut(s)	472
MspI	CCGG	1 cut(s)	750
MspR9I	CCNGG	1 cut(s)	955
MvaI	CCWGG	1 cut(s)	955
MvnI	CGCG	1 cut(s)	310
MwoI	GCNNNNNNNGC	3 cut(s)	323, 413, 850
NlaIII	CATG	2 cut(s)	118, 802
NlaIV	GGNNCC	1 cut(s)	182
NmeAIII	GCCGAG	1 cut(s)	376
NmuCI	GTSAC	1 cut(s)	858
NspI	RCATGY	1 cut(s)	118
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	5 cut(s)	97, 244, 379, 893, 932
PflMI	CCANNNNNTGG	1 cut(s)	960
PkrI	GCNGC	4 cut(s)	328, 474, 565, 728
PleI	GAGTC	1 cut(s)	166
PpsI	GAGTC	1 cut(s)	166
Psp124BI	GAGCTC	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	953
PspFI	CCCAGC	1 cut(s)	468
PspGI	CCWGG	1 cut(s)	953
PspN4I	GGNNCC	1 cut(s)	182
PspPI	GGNCC	3 cut(s)	15, 944, 963
PstI	CTGCAG	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	472
RsaI	GTAC	2 cut(s)	182, 683
RsaNI	GTAC	2 cut(s)	181, 682
SacI	GAGCTC	1 cut(s)	204
SalI	GTCGAC	1 cut(s)	657
SaqAI	TTAA	3 cut(s)	209, 636, 849
SatI	GCNGC	4 cut(s)	327, 473, 564, 727
Sau96I	GGNCC	3 cut(s)	15, 944, 963
SchI	GAGTC	1 cut(s)	167
ScrFI	CCNGG	1 cut(s)	955
SduI	GDGCHC	1 cut(s)	204
SfcI	CTRYAG	3 cut(s)	193, 763, 967
SinI	GGWCC	1 cut(s)	15
SpeI	ACTAGT	1 cut(s)	538
Sse9I	AATT	8 cut(s)	38, 49, 233, 613, 648, 740, 829, 846
SsiI	CCGC	1 cut(s)	563
SspMI	CTAG	1 cut(s)	539
SstI	GAGCTC	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	953
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	2 cut(s)	764, 923
TaiI	ACGT	1 cut(s)	362
TaqI	TCGA	2 cut(s)	658, 734
TasI	AATT	8 cut(s)	38, 49, 233, 613, 648, 740, 829, 846
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	5 cut(s)	97, 244, 379, 893, 932
Tru1I	TTAA	3 cut(s)	209, 636, 849
Tru9I	TTAA	3 cut(s)	209, 636, 849
TscAI	CASTG	2 cut(s)	132, 928
TseFI	GTSAC	1 cut(s)	858
TseI	GCWGC	3 cut(s)	326, 472, 726
Tsp45I	GTSAC	1 cut(s)	858
TspDTI	ATGAA	4 cut(s)	687, 815, 828, 954
TspRI	CASTG	2 cut(s)	132, 928
Van91I	CCANNNNNTGG	1 cut(s)	960
VpaK11BI	GGWCC	1 cut(s)	15
XagI	CCTNNNNNAGG	1 cut(s)	709
XapI	RAATTY	4 cut(s)	49, 233, 613, 829
XceI	RCATGY	1 cut(s)	118
XmiI	GTMKAC	1 cut(s)	658
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.