RchiOBHm_Chr1g0378761

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004452
Physical Location & Seq
Forward (+)
65113886 .. 65115889
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60216

Sequence Viewer

Length: 528 bp
ATGGCTATATATAGACTTTTTACAACTATATACCCTTTAGTCTGCAAAGAGCTCAGCTTAATTCTCAGAGGCGCTTACAGAAAAGTGCCCAAGAATCTCCAGTCTCTTATCTTCCAAGATACCCTCACCGCCTTTCGTCTCCTTCCTGAAATGAAGACGCGCAGTGCTGTCTCAGCAGCTCACCTCCTCCTCCAGAGCGTTGAGGCCACTTTGCCGAAGCAAAAGAAGAACTTGGCTGTTACAGAATATAAGAATGCAATGATTGCTCACAAGAGGCGCGCTAAAGCTCGCCAAGAAGAGAATGCTTTCAAATACAAACTCATCAATTCTTACCATTGTATATCTGCTTGGATTTCAGGGAATAATTCATCAAAGAAATTAAAATCCAGTAGGGGATACTGTAGATATTGCAAGACAATTGTTTGGCTCGATAACATGAAATGTTTCGATGACCATATTGGACTAAATCCTGAAATTCAGAAAATTGACCCTGTATCACCTAGTCAGTTATTAAATGGGGTTGTCTGA

Protein Analysis

175

Amino Acids

20.02

Weight (kDa)

9.84

Isoelectric Point (pI)

47.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At5g52880_ARM PF24104 11 - 92 1.6e-36 F-box protein At5g52880 ARM repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 160, 279
AciI CCGC 1 cut(s) 129
AcsI RAATTY 1 cut(s) 474
AgsI TTSAA 1 cut(s) 310
AluBI AGCT 4 cut(s) 52, 57, 179, 287
AluI AGCT 4 cut(s) 52, 57, 179, 287
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 3 cut(s) 108, 143, 175
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 474
Asp700I GAANNNNTTC 2 cut(s) 305, 443
AspLEI GCGC 4 cut(s) 74, 162, 279, 281
AsuHPI GGTGA 3 cut(s) 118, 173, 489
BaeGI GKGCMC 1 cut(s) 90
BanII GRGCYC 1 cut(s) 54
BbsI GAAGAC 1 cut(s) 161
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 188
BciVI GTATCC 1 cut(s) 389
BcoDI GTCTC 3 cut(s) 108, 143, 175
BfaI CTAG 1 cut(s) 501
BfmI CTRYAG 1 cut(s) 400
BfoI RGCGCY 1 cut(s) 75
BfuI GTATCC 1 cut(s) 389
BisI GCNGC 1 cut(s) 177
BlpI GCTNAGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 161
BpmI CTGGAG 2 cut(s) 83, 176
Bpu1102I GCTNAGC 1 cut(s) 53
Bse1I ACTGG 2 cut(s) 100, 387
Bse3DI GCAATG 1 cut(s) 264
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 3 cut(s) 67, 79, 186
BseNI ACTGG 2 cut(s) 100, 387
BsePI GCGCGC 1 cut(s) 277
BseRI GAGGAG 2 cut(s) 176, 179
BseSI GKGCMC 1 cut(s) 90
BseXI GCAGC 1 cut(s) 188
Bsh1236I CGCG 2 cut(s) 160, 279
BshFI GGCC 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 54
BsmAI GTCTC 3 cut(s) 108, 143, 175
BsmBI CGTCTC 1 cut(s) 143
BsmI GAATGC 2 cut(s) 259, 307
BsnI GGCC 1 cut(s) 206
Bsp1286I GDGCHC 2 cut(s) 54, 90
Bsp1720I GCTNAGC 1 cut(s) 53
BspACI CCGC 1 cut(s) 129
BspANI GGCC 1 cut(s) 206
BspCNI CTCAG 3 cut(s) 66, 78, 185
BspFNI CGCG 2 cut(s) 160, 279
BsrDI GCAATG 1 cut(s) 264
BsrI ACTGG 2 cut(s) 100, 387
BssHII GCGCGC 1 cut(s) 277
Bst4CI ACNGT 1 cut(s) 401
Bst6I CTCTTC 1 cut(s) 291
BstAPI GCANNNNNTGC 1 cut(s) 263
BstC8I GCNNGC 2 cut(s) 279, 289
BstDEI CTNAG 3 cut(s) 53, 65, 172
BstFNI CGCG 2 cut(s) 160, 279
BstH2I RGCGCY 1 cut(s) 75
BstHHI GCGC 4 cut(s) 74, 162, 279, 281
BstMAI GTCTC 3 cut(s) 108, 143, 175
BstMWI GCNNNNNNNGC 2 cut(s) 173, 263
BstSFI CTRYAG 1 cut(s) 400
BstSLI GKGCMC 1 cut(s) 90
BstUI CGCG 2 cut(s) 160, 279
BstV1I GCAGC 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 161
BsuI GTATCC 1 cut(s) 389
BsuRI GGCC 1 cut(s) 206
BtsI GCAGTG 1 cut(s) 169
BtsIMutI CAGTG 1 cut(s) 169
Cac8I GCNNGC 2 cut(s) 279, 289
CfoI GCGC 4 cut(s) 74, 162, 279, 281
CseI GACGC 1 cut(s) 166
CviAII CATG 1 cut(s) 436
CviJI RGCY 8 cut(s) 5, 52, 57, 179, 206, 236, 287, 427
CviKI_1 RGCY 8 cut(s) 5, 52, 57, 179, 206, 236, 287, 427
DdeI CTNAG 3 cut(s) 53, 65, 172
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Ecl136II GAGCTC 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 54
Esp3I CGTCTC 1 cut(s) 143
FaeI CATG 1 cut(s) 439
FaiI YATR 9 cut(s) 8, 10, 12, 29, 31, 249, 341, 437, 456
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FatI CATG 1 cut(s) 435
Fnu4HI GCNGC 1 cut(s) 177
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 1 cut(s) 501
GlaI GCGC 4 cut(s) 73, 161, 278, 280
GluI GCNGC 1 cut(s) 177
GsuI CTGGAG 2 cut(s) 83, 176
HaeII RGCGCY 1 cut(s) 75
HaeIII GGCC 1 cut(s) 206
HgaI GACGC 1 cut(s) 166
HhaI GCGC 4 cut(s) 74, 162, 279, 281
Hin1II CATG 1 cut(s) 439
Hin6I GCGC 4 cut(s) 72, 160, 277, 279
HinP1I GCGC 4 cut(s) 72, 160, 277, 279
HinfI GANTC 1 cut(s) 94
HphI GGTGA 3 cut(s) 118, 173, 489
Hpy188I TCNGA 3 cut(s) 68, 480, 527
Hpy188III TCNNGA 3 cut(s) 146, 193, 470
HpyAV CCTTC 1 cut(s) 152
HpyCH4III ACNGT 1 cut(s) 401
HpyCH4V TGCA 3 cut(s) 45, 257, 411
HpyF10VI GCNNNNNNNGC 2 cut(s) 173, 263
HpyF3I CTNAG 3 cut(s) 53, 65, 172
Hsp92II CATG 1 cut(s) 439
HspAI GCGC 4 cut(s) 72, 160, 277, 279
LpnPI CCDG 7 cut(s) 113, 159, 206, 342, 400, 483, 504
Lsp1109I GCAGC 1 cut(s) 188
MaeI CTAG 1 cut(s) 501
MaeIII GTNAC 1 cut(s) 238
MboII GAAGA 4 cut(s) 103, 166, 238, 308
MfeI CAATTG 1 cut(s) 417
MhlI GDGCHC 2 cut(s) 54, 90
MluCI AATT 7 cut(s) 60, 325, 364, 377, 417, 474, 483
MnlI CCTC 7 cut(s) 62, 134, 194, 196, 197, 200, 267
MroXI GAANNNNTTC 2 cut(s) 305, 443
MseI TTAA 3 cut(s) 59, 380, 512
MunI CAATTG 1 cut(s) 417
Mva1269I GAATGC 2 cut(s) 259, 307
MvnI CGCG 2 cut(s) 160, 279
MwoI GCNNNNNNNGC 2 cut(s) 173, 263
NlaIII CATG 1 cut(s) 439
PauI GCGCGC 1 cut(s) 277
PctI GAATGC 2 cut(s) 259, 307
PdmI GAANNNNTTC 2 cut(s) 305, 443
PfeI GAWTC 1 cut(s) 94
PkrI GCNGC 1 cut(s) 178
Psp124BI GAGCTC 1 cut(s) 54
PteI GCGCGC 1 cut(s) 277
SacI GAGCTC 1 cut(s) 54
SaqAI TTAA 3 cut(s) 59, 380, 512
SatI GCNGC 1 cut(s) 177
SduI GDGCHC 2 cut(s) 54, 90
SetI ASST 6 cut(s) 54, 59, 181, 186, 289, 502
SfcI CTRYAG 1 cut(s) 400
Sse9I AATT 7 cut(s) 60, 325, 364, 377, 417, 474, 483
SsiI CCGC 1 cut(s) 129
SspMI CTAG 1 cut(s) 501
SstI GAGCTC 1 cut(s) 54
TaaI ACNGT 1 cut(s) 401
TaqI TCGA 2 cut(s) 429, 447
TasI AATT 7 cut(s) 60, 325, 364, 377, 417, 474, 483
TfiI GAWTC 1 cut(s) 94
Tru1I TTAA 3 cut(s) 59, 380, 512
Tru9I TTAA 3 cut(s) 59, 380, 512
TscAI CASTG 1 cut(s) 169
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 3 cut(s) 167, 357, 452
TspRI CASTG 1 cut(s) 169
XapI RAATTY 1 cut(s) 474
XmnI GAANNNNTTC 2 cut(s) 305, 443
XspI CTAG 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.