Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004452

Physical Location & Seq

Genomic Coordinates Reverse (-)

51729164 .. 51730050

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0412400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCCGCCACCAACCTCTCATTCCCTCACTTCTCTCTTCCATGTCACCACCACCACCACCACCACCACCACCCCAACTTCTTCACTCTTCCGACTCGGGCCCGACCCGGCCCGAGAACCCAGGCTCTGGGCCATGACATGATTGGAGACTTTGGGGCCAGAGACCCGTACCCGGCAGAGATAGCCAGTGAGTTTGGAGACAAAGTACTGGGCTTCCAGAACACAGAGCACAAGATCCTCATCCCAACTGTGTCTGCTTCCTCTCTAGCCCAGCAAGAGTGCACCCCTGTCTCTCCTCTCCAGGCTCCTATGCTTGAAGAGGACGCGCAACAGCTCCTCAGGAAGGTTCTTGGGTGGAGATTGATAGTTGGAGAAGACGGGCTCAAACTACGGTGCTTGTGGAAATTGAGAGATTACCAATGTGGGGTTGAACTCATCAATAGGGTTTATAAGGTTGTGGAAGCTGCAGGGCATTTCCCAAATCTTCACTTGGAGCAACCCAATCAAGTTAGAGCAGAGCTATGGACATCTTCCGTTGGAGGATTGACTATGAATGATTTCATTGTAGCTGCTAAAATAGATGCGATCAAAACATCAGATCTCGTGCCCGTGAGAAGAGCTTGGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

209

Amino Acids

23.42

Weight (kDa)

6.92

Isoelectric Point (pI)

38.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pterin_4a	PF01329	103 - 196	3.3e-21	Pterin 4 alpha carbinolamine dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52880
fragaria_vesca	FvH4_7g30600 FvH4_7g30600
malus_domestica	MD01G1211200.v1.1
prunus_persica	Prupe.2G291600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G304000_v2.0.a1
pyrus_communis	pycom01g22170
rosa_chinensis	RchiOBHm_Chr1g0378761 RchiOBHm_Chr1g0379101 RchiOBHm_Chr1g0379281 RchiOBHm_Chr1g0379501 RchiOBHm_Chr1g0379511
rosa_laevigata	RLG00000026397
rosa_multiflora	Rmu_sc0031430.1_g000003 Rmu_sc0031430.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280130 Rroxscaffold_4G00280150
rosa_rugosa	Rorug01G0412300 Rorug01G0412400
rosa_samantha	Rh1AG434800 Rh1AG435100 Rh1BG392600 Rh1CG405300 Rh1DG423400
rosa_wichuraiana	Rw1G038010 Rw1G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	450
AccB7I	CCANNNNNTGG	1 cut(s)	127
AccII	CGCG	1 cut(s)	326
AciI	CCGC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	229
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	2 cut(s)	170, 207
AfiI	CCNNNNNNNGG	4 cut(s)	127, 172, 343, 424
AgsI	TTSAA	2 cut(s)	317, 431
AjnI	CCWGG	2 cut(s)	120, 300
AjuI	GAANNNNNNNTTGG	1 cut(s)	37
AluBI	AGCT	5 cut(s)	334, 464, 520, 569, 620
AluI	AGCT	5 cut(s)	334, 464, 520, 569, 620
Alw21I	GWGCWC	2 cut(s)	231, 284
Alw26I	GTCTC	4 cut(s)	141, 156, 192, 295
Alw44I	GTGCAC	1 cut(s)	280
AlwI	GGATC	1 cut(s)	229
AlwNI	CAGNNNCTG	1 cut(s)	127
Ama87I	CYCGRG	2 cut(s)	96, 112
AoxI	GGCC	6 cut(s)	3, 99, 109, 130, 156, 624
ApaI	GGGCCC	1 cut(s)	103
ApaLI	GTGCAC	1 cut(s)	280
ApeKI	GCWGC	2 cut(s)	464, 569
Asp700I	GAANNNNTTC	1 cut(s)	557
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	6 cut(s)	99, 100, 110, 130, 156, 624
AsuC2I	CCSGG	2 cut(s)	108, 173
AsuHPI	GGTGA	1 cut(s)	38
AvaI	CYCGRG	2 cut(s)	96, 112
AxyI	CCTNAGG	1 cut(s)	338
BaeGI	GKGCMC	3 cut(s)	103, 284, 609
BanII	GRGCYC	2 cut(s)	103, 384
BauI	CACGAG	1 cut(s)	602
BbsI	GAAGAC	1 cut(s)	381
Bbv12I	GWGCWC	2 cut(s)	231, 284
BbvI	GCAGC	2 cut(s)	451, 556
BciT130I	CCWGG	2 cut(s)	122, 302
BcnI	CCSGG	2 cut(s)	108, 173
BcoDI	GTCTC	4 cut(s)	141, 156, 192, 295
BfaI	CTAG	2 cut(s)	266, 628
BfmI	CTRYAG	1 cut(s)	465
BglII	AGATCT	1 cut(s)	598
BisI	GCNGC	3 cut(s)	6, 465, 570
BlsI	GCNGC	3 cut(s)	7, 466, 571
BmcAI	AGTACT	1 cut(s)	207
Bme1390I	CCNGG	4 cut(s)	108, 122, 173, 302
BmeT110I	CYCGRG	2 cut(s)	96, 112
BmgT120I	GGNCC	6 cut(s)	99, 100, 110, 130, 156, 624
BmiI	GGNNCC	3 cut(s)	101, 157, 306
BmrFI	CCNGG	4 cut(s)	108, 122, 173, 302
BmrI	ACTGGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	571
BmuI	ACTGGG	1 cut(s)	218
BpiI	GAAGAC	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	284
BpuMI	CCSGG	2 cut(s)	108, 173
BsaBI	GATNNNNATC	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	120
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	4 cut(s)	127, 172, 343, 424
Bse1I	ACTGG	2 cut(s)	186, 213
Bse21I	CCTNAGG	1 cut(s)	338
Bse8I	GATNNNNATC	1 cut(s)	239
BseBI	CCWGG	2 cut(s)	122, 302
BseDI	CCNNGG	1 cut(s)	120
BseGI	GGATG	1 cut(s)	240
BseJI	GATNNNNATC	1 cut(s)	239
BseLI	CCNNNNNNNGG	4 cut(s)	127, 172, 343, 424
BseMII	CTCAG	1 cut(s)	352
BseNI	ACTGG	2 cut(s)	186, 213
BseRI	GAGGAG	2 cut(s)	285, 326
BseSI	GKGCMC	3 cut(s)	103, 284, 609
BseXI	GCAGC	2 cut(s)	451, 556
BseYI	CCCAGC	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	326
BshFI	GGCC	6 cut(s)	5, 101, 111, 132, 158, 626
BsiHKAI	GWGCWC	2 cut(s)	231, 284
BsiHKCI	CYCGRG	2 cut(s)	96, 112
BsiSI	CCGG	2 cut(s)	108, 173
BslI	CCNNNNNNNGG	4 cut(s)	127, 172, 343, 424
BsmAI	GTCTC	4 cut(s)	141, 156, 192, 295
BsnI	GGCC	6 cut(s)	5, 101, 111, 132, 158, 626
Bso31I	GGTCTC	1 cut(s)	156
BsoBI	CYCGRG	2 cut(s)	96, 112
Bsp120I	GGGCCC	1 cut(s)	99
Bsp1286I	GDGCHC	5 cut(s)	103, 231, 284, 384, 609
Bsp143I	GATC	3 cut(s)	234, 585, 598
BspACI	CCGC	1 cut(s)	6
BspANI	GGCC	6 cut(s)	5, 101, 111, 132, 158, 626
BspCNI	CTCAG	1 cut(s)	351
BspFNI	CGCG	1 cut(s)	326
BspLI	GGNNCC	3 cut(s)	101, 157, 306
BspMAI	CTGCAG	1 cut(s)	469
BspPI	GGATC	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	610
BspTNI	GGTCTC	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	186, 213
BssECI	CCNNGG	1 cut(s)	120
BssMI	GATC	3 cut(s)	234, 585, 598
BssSI	CACGAG	1 cut(s)	602
Bst2BI	CACGAG	1 cut(s)	602
Bst2UI	CCWGG	2 cut(s)	122, 302
Bst4CI	ACNGT	2 cut(s)	250, 393
Bst6I	CTCTTC	4 cut(s)	42, 93, 312, 610
BstDEI	CTNAG	1 cut(s)	338
BstENI	CCTNNNNNAGG	1 cut(s)	341
BstF5I	GGATG	1 cut(s)	240
BstFNI	CGCG	1 cut(s)	326
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	3 cut(s)	237, 588, 601
BstMAI	GTCTC	4 cut(s)	141, 156, 192, 295
BstMBI	GATC	3 cut(s)	234, 585, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	2 cut(s)	122, 302
BstSCI	CCNGG	4 cut(s)	106, 120, 171, 300
BstSFI	CTRYAG	1 cut(s)	465
BstSLI	GKGCMC	3 cut(s)	103, 284, 609
BstUI	CGCG	1 cut(s)	326
BstV1I	GCAGC	2 cut(s)	451, 556
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	2 cut(s)	234, 598
BstYI	RGATCY	2 cut(s)	234, 598
Bsu36I	CCTNAGG	1 cut(s)	338
BsuRI	GGCC	6 cut(s)	5, 101, 111, 132, 158, 626
BtsCI	GGATG	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	193
CaiI	CAGNNNCTG	1 cut(s)	127
CfoI	GCGC	1 cut(s)	328
Cfr13I	GGNCC	6 cut(s)	99, 100, 110, 130, 156, 624
CseI	GACGC	1 cut(s)	332
Csp6I	GTAC	2 cut(s)	169, 206
CviAII	CATG	3 cut(s)	42, 134, 139
CviQI	GTAC	2 cut(s)	169, 206
DdeI	CTNAG	1 cut(s)	338
DpnI	GATC	3 cut(s)	236, 587, 600
DpnII	GATC	3 cut(s)	234, 585, 598
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	4 cut(s)	42, 93, 312, 610
EarI	CTCTTC	4 cut(s)	42, 93, 312, 610
Eco24I	GRGCYC	2 cut(s)	103, 384
Eco31I	GGTCTC	1 cut(s)	156
Eco81I	CCTNAGG	1 cut(s)	338
Eco88I	CYCGRG	2 cut(s)	96, 112
EcoNI	CCTNNNNNAGG	1 cut(s)	341
EcoRII	CCWGG	2 cut(s)	120, 300
EcoT38I	GRGCYC	2 cut(s)	103, 384
FaeI	CATG	3 cut(s)	45, 137, 142
FaiI	YATR	7 cut(s)	43, 135, 140, 311, 450, 523, 551
FatI	CATG	3 cut(s)	41, 133, 138
Fnu4HI	GCNGC	3 cut(s)	6, 465, 570
FokI	GGATG	1 cut(s)	227
FriOI	GRGCYC	2 cut(s)	103, 384
Fsp4HI	GCNGC	3 cut(s)	6, 465, 570
FspBI	CTAG	2 cut(s)	266, 628
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	3 cut(s)	6, 465, 570
GsaI	CCCAGC	1 cut(s)	274
GsuI	CTGGAG	1 cut(s)	284
HaeIII	GGCC	6 cut(s)	5, 101, 111, 132, 158, 626
HapII	CCGG	2 cut(s)	108, 173
HgaI	GACGC	1 cut(s)	332
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	3 cut(s)	45, 137, 142
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	2 cut(s)	108, 173
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	2 cut(s)	93, 598
Hpy188III	TCNNGA	2 cut(s)	217, 340
Hpy8I	GTNNAC	1 cut(s)	282
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	2 cut(s)	250, 393
HpyCH4V	TGCA	2 cut(s)	282, 467
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	338
Hsp92II	CATG	3 cut(s)	45, 137, 142
HspAI	GCGC	1 cut(s)	326
Kzo9I	GATC	3 cut(s)	234, 585, 598
LguI	GCTCTTC	1 cut(s)	610
LmnI	GCTCC	3 cut(s)	310, 339, 493
Lsp1109I	GCAGC	2 cut(s)	451, 556
LweI	GCATC	1 cut(s)	571
MaeI	CTAG	2 cut(s)	266, 628
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	3 cut(s)	236, 587, 600
MboI	GATC	3 cut(s)	234, 585, 598
MboII	GAAGA	8 cut(s)	29, 73, 80, 329, 386, 476, 522, 627
MflI	RGATCY	2 cut(s)	234, 598
MhlI	GDGCHC	5 cut(s)	103, 231, 284, 384, 609
MluCI	AATT	1 cut(s)	404
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	3 cut(s)	116, 349, 517
MnlI	CCTC	8 cut(s)	26, 36, 248, 271, 306, 313, 347, 533
MroXI	GAANNNNTTC	1 cut(s)	557
MspI	CCGG	2 cut(s)	108, 173
MspR9I	CCNGG	4 cut(s)	108, 122, 173, 302
MvaI	CCWGG	2 cut(s)	122, 302
MvnI	CGCG	1 cut(s)	326
MwoI	GCNNNNNNNGC	1 cut(s)	182
NciI	CCSGG	2 cut(s)	108, 173
NdeII	GATC	3 cut(s)	234, 585, 598
NlaIII	CATG	3 cut(s)	45, 137, 142
NlaIV	GGNNCC	3 cut(s)	101, 157, 306
NmuCI	GTSAC	1 cut(s)	44
PciSI	GCTCTTC	1 cut(s)	610
PdmI	GAANNNNTTC	1 cut(s)	557
PflMI	CCANNNNNTGG	1 cut(s)	127
PkrI	GCNGC	3 cut(s)	7, 466, 571
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PsiI	TTATAA	1 cut(s)	450
Psp6I	CCWGG	2 cut(s)	120, 300
PspFI	CCCAGC	1 cut(s)	270
PspGI	CCWGG	2 cut(s)	120, 300
PspN4I	GGNNCC	3 cut(s)	101, 157, 306
PspOMI	GGGCCC	1 cut(s)	99
PspPI	GGNCC	6 cut(s)	99, 100, 110, 130, 156, 624
PstI	CTGCAG	1 cut(s)	469
PstNI	CAGNNNCTG	1 cut(s)	127
PsuI	RGATCY	2 cut(s)	234, 598
RsaI	GTAC	2 cut(s)	170, 207
RsaNI	GTAC	2 cut(s)	169, 206
SapI	GCTCTTC	1 cut(s)	610
SatI	GCNGC	3 cut(s)	6, 465, 570
Sau3AI	GATC	3 cut(s)	234, 585, 598
Sau96I	GGNCC	6 cut(s)	99, 100, 110, 130, 156, 624
ScaI	AGTACT	1 cut(s)	207
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	4 cut(s)	108, 122, 173, 302
SduI	GDGCHC	5 cut(s)	103, 231, 284, 384, 609
SetI	ASST	8 cut(s)	18, 336, 348, 456, 466, 522, 571, 622
SfaNI	GCATC	1 cut(s)	571
SfcI	CTRYAG	1 cut(s)	465
Sse9I	AATT	1 cut(s)	404
SsiI	CCGC	1 cut(s)	6
SspMI	CTAG	2 cut(s)	266, 628
StyD4I	CCNGG	4 cut(s)	106, 120, 171, 300
TaaI	ACNGT	2 cut(s)	250, 393
TasI	AATT	1 cut(s)	404
TatI	WGTACW	1 cut(s)	205
TauI	GCSGC	1 cut(s)	8
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	2 cut(s)	464, 569
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	2 cut(s)	550, 566
TspGWI	ACGGA	1 cut(s)	523
TspRI	CASTG	1 cut(s)	193
Van91I	CCANNNNNTGG	1 cut(s)	127
VneI	GTGCAC	1 cut(s)	280
XagI	CCTNNNNNAGG	1 cut(s)	341
XcmI	CCANNNNNNNNNTGG	1 cut(s)	140
XmnI	GAANNNNTTC	1 cut(s)	557
XspI	CTAG	2 cut(s)	266, 628
ZrmI	AGTACT	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.