Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004452

Physical Location & Seq

Genomic Coordinates Forward (+)

2787951 .. 2788946

Gene Structure 996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00280150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGAAGACGCGCAGTGCTGTCTCAGCAGCTCACCTCCTCCTCCAGAGCGTTGAGGCCACTTTGCCGAAGCAAAAGAAGAACTTGGCTGTTACAGAATATAAGAATGCAATGATTGCTCACAAGAGGCGCGCTAAAGCTCGCCAAGAAGAGAATGTTGCCCATCTGCCACAAGATGTTCTTGTACATGTATTCAGTTTCCTGGATTTTCAATCTTTAGTCTCTGTTGGGCAAGTCTGCTGGCCATGGAATTTTGCAGCAAGTGATAACCGGCTGTGGAGAGGCAATACGCTACGTTCTTTAGGGACTCTTACAATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

106

Amino Acids

11.97

Weight (kDa)

10.21

Isoelectric Point (pI)

55.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At5g52880_ARM	PF24104	1 - 42	1.5e-13	F-box protein At5g52880 ARM repeat
F-box-like	PF12937	53 - 93	1.1e-15	F-box-like
F-box	PF00646	54 - 93	3.9e-09	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52880
fragaria_vesca	FvH4_7g30600 FvH4_7g30600
malus_domestica	MD01G1211200.v1.1
prunus_persica	Prupe.2G291600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G304000_v2.0.a1
pyrus_communis	pycom01g22170
rosa_chinensis	RchiOBHm_Chr1g0378761 RchiOBHm_Chr1g0379101 RchiOBHm_Chr1g0379281 RchiOBHm_Chr1g0379501 RchiOBHm_Chr1g0379511
rosa_laevigata	RLG00000026397
rosa_multiflora	Rmu_sc0031430.1_g000003 Rmu_sc0031430.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280130 Rroxscaffold_4G00280150
rosa_rugosa	Rorug01G0412300 Rorug01G0412400
rosa_samantha	Rh1AG434800 Rh1AG435100 Rh1BG392600 Rh1CG405300 Rh1DG423400
rosa_wichuraiana	Rw1G038010 Rw1G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	10, 129
AcoI	YGGCCR	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	247
AfaI	GTAC	1 cut(s)	183
AflIII	ACRYGT	1 cut(s)	184
AgsI	TTSAA	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	2 cut(s)	29, 137
AluI	AGCT	2 cut(s)	29, 137
Alw26I	GTCTC	2 cut(s)	25, 223
AoxI	GGCC	2 cut(s)	54, 239
ApeKI	GCWGC	2 cut(s)	26, 254
ApoI	RAATTY	1 cut(s)	247
AspLEI	GCGC	3 cut(s)	12, 129, 131
AsuHPI	GGTGA	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	38, 266
BccI	CCATC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	200
BcoDI	GTCTC	2 cut(s)	25, 223
BisI	GCNGC	2 cut(s)	27, 255
BlsI	GCNGC	2 cut(s)	28, 256
Bme1390I	CCNGG	1 cut(s)	200
BmrFI	CCNGG	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	242
Bse118I	RCCGGY	1 cut(s)	267
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	242
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	36
BsePI	GCGCGC	1 cut(s)	127
BseRI	GAGGAG	2 cut(s)	26, 29
BseXI	GCAGC	2 cut(s)	38, 266
Bsh1236I	CGCG	2 cut(s)	10, 129
BshFI	GGCC	2 cut(s)	56, 241
BsiSI	CCGG	1 cut(s)	268
BslFI	GGGAC	1 cut(s)	316
BsmAI	GTCTC	2 cut(s)	25, 223
BsmFI	GGGAC	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	2 cut(s)	56, 241
Bsp1407I	TGTACA	1 cut(s)	181
Bsp19I	CCATGG	1 cut(s)	242
BspANI	GGCC	2 cut(s)	56, 241
BspCNI	CTCAG	1 cut(s)	35
BspFNI	CGCG	2 cut(s)	10, 129
BsrDI	GCAATG	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	267
BsrGI	TGTACA	1 cut(s)	181
BssAI	RCCGGY	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	242
BssHII	GCGCGC	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	242
Bst2UI	CCWGG	1 cut(s)	200
Bst6I	CTCTTC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	181
BstC8I	GCNNGC	3 cut(s)	129, 139, 239
BstDEI	CTNAG	1 cut(s)	22
BstDSI	CCRYGG	1 cut(s)	242
BstFNI	CGCG	2 cut(s)	10, 129
BstHHI	GCGC	3 cut(s)	12, 129, 131
BstMAI	GTCTC	2 cut(s)	25, 223
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 113
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	198
BstUI	CGCG	2 cut(s)	10, 129
BstV1I	GCAGC	2 cut(s)	38, 266
BstV2I	GAAGAC	1 cut(s)	11
BsuRI	GGCC	2 cut(s)	56, 241
BtgI	CCRYGG	1 cut(s)	242
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	3 cut(s)	129, 139, 239
CfoI	GCGC	3 cut(s)	12, 129, 131
Cfr10I	RCCGGY	1 cut(s)	267
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	182
CviAII	CATG	2 cut(s)	185, 243
CviJI	RGCY	6 cut(s)	29, 56, 86, 137, 241, 271
CviKI_1	RGCY	6 cut(s)	29, 56, 86, 137, 241, 271
CviQI	GTAC	1 cut(s)	182
DdeI	CTNAG	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	2 cut(s)	188, 246
FaiI	YATR	3 cut(s)	99, 186, 244
FalI	AAGNNNNNCTT	4 cut(s)	65, 97, 162, 194
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	2 cut(s)	184, 242
Fnu4HI	GCNGC	2 cut(s)	27, 255
Fsp4HI	GCNGC	2 cut(s)	27, 255
GlaI	GCGC	3 cut(s)	11, 128, 130
GluI	GCNGC	2 cut(s)	27, 255
GsuI	CTGGAG	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	56, 241
HapII	CCGG	1 cut(s)	268
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	3 cut(s)	12, 129, 131
Hin1II	CATG	2 cut(s)	188, 246
Hin6I	GCGC	3 cut(s)	10, 127, 129
HinP1I	GCGC	3 cut(s)	10, 127, 129
HinfI	GANTC	1 cut(s)	304
HpaII	CCGG	1 cut(s)	268
HphI	GGTGA	1 cut(s)	23
Hpy188III	TCNNGA	1 cut(s)	43
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	2 cut(s)	107, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 113
HpyF3I	CTNAG	1 cut(s)	22
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	2 cut(s)	188, 246
HspAI	GCGC	3 cut(s)	10, 127, 129
LpnPI	CCDG	5 cut(s)	56, 185, 212, 223, 281
Lsp1109I	GCAGC	2 cut(s)	38, 266
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	88
MboII	GAAGA	3 cut(s)	16, 88, 158
MlsI	TGGCCA	1 cut(s)	241
MluCI	AATT	1 cut(s)	247
MluNI	TGGCCA	1 cut(s)	241
MlyI	GAGTC	1 cut(s)	298
MnlI	CCTC	6 cut(s)	44, 46, 47, 50, 117, 272
Mox20I	TGGCCA	1 cut(s)	241
MscI	TGGCCA	1 cut(s)	241
Msp20I	TGGCCA	1 cut(s)	241
MspI	CCGG	1 cut(s)	268
MspR9I	CCNGG	1 cut(s)	200
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	2 cut(s)	10, 129
MwoI	GCNNNNNNNGC	2 cut(s)	23, 113
NcoI	CCATGG	1 cut(s)	242
NlaIII	CATG	2 cut(s)	188, 246
NspI	RCATGY	1 cut(s)	188
PauI	GCGCGC	1 cut(s)	127
PciI	ACATGT	1 cut(s)	184
PctI	GAATGC	1 cut(s)	109
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	2 cut(s)	28, 256
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PscI	ACATGT	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PteI	GCGCGC	1 cut(s)	127
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
SatI	GCNGC	2 cut(s)	27, 255
SchI	GAGTC	1 cut(s)	298
ScrFI	CCNGG	1 cut(s)	200
SetI	ASST	4 cut(s)	31, 36, 139, 295
Sse9I	AATT	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	242
TaiI	ACGT	1 cut(s)	295
TasI	AATT	1 cut(s)	247
TatI	WGTACW	1 cut(s)	181
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	2 cut(s)	26, 254
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	19
XapI	RAATTY	1 cut(s)	247
XceI	RCATGY	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.