Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004452

Physical Location & Seq

Genomic Coordinates Reverse (-)

65587573 .. 65589542

Gene Structure 1970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G038020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTCAAAACAATTGGAGAGATACCAAAAACTTGCGCTGAAAGAATCTTTAGGATCAATTCACAGATACCCTTTAGTCTGCAAAGAGCTCAGCTTAATTCTCAGAGGCGCTTACAGAAAAGTGCCCAAGAATCTCCAGTCTCTTATCTTCCAAGATACCCTCACCGCCTTTCGTCTCCTTCCTGAAATGAAGACGCGCAGTGCTGTCTCAGCAGCTCACCTCCTCCTCCAGAGCGTTGAGGCCACTTTGCCGAAGCAAAAGAAGAACTTGGCTGTTACAGAATATAAGAATGCAATGATTGCTCACAAGAGGCGCGCTAAAGCTCGCCAAGAAGAGAATGTTGCCCATCTGCCACAAGATGTTCTTGTACATGTATTCAGTTTCCTGGATTTTCAATCTTTAGTCTCTGTTGGGCAAGTCTGCTGGCCCTGGAATTTTGCAGCAAGTGATAACCGGCTGTGGCAGAGGCAATACGCTACGTTCTTTAGGGACTCTTACAATGACTTGAATATCAAGGAACAGCATACCAGTAGACAGGTTGAAGATGATAGGAACAATTCATCTAAGAAATTAAAATCCAGTAGGGGATACTGTAGATACTGCAAGACAATTGTTTGGCTCAATAACATGAAATGTTTCAATGACCATATTGGACTAAATCCTGAAATTCAGAAAATTGACCCTGTATCACCTAGTCAGGTGGTTGACTATCTGTTGGAAGATTCTATATCAGTCAAATCTTCTTCAGAGAGTGATAGCGACAGTGATTCAGAAGCAGGGTCCTTTTCTAGGTTATGGGCCTATCGAAGACCCTTGACCAGTACTGAAGATATGCCTTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

281

Amino Acids

32.42

Weight (kDa)

9.26

Isoelectric Point (pI)

59.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At5g52880_ARM	PF24104	6 - 104	7.2e-43	F-box protein At5g52880 ARM repeat
F-box-like	PF12937	115 - 158	1.4e-15	F-box-like
F-box	PF00646	116 - 155	2.3e-08	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52880
fragaria_vesca	FvH4_7g30600 FvH4_7g30600
malus_domestica	MD01G1211200.v1.1
prunus_persica	Prupe.2G291600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G304000_v2.0.a1
pyrus_communis	pycom01g22170
rosa_chinensis	RchiOBHm_Chr1g0378761 RchiOBHm_Chr1g0379101 RchiOBHm_Chr1g0379281 RchiOBHm_Chr1g0379501 RchiOBHm_Chr1g0379511
rosa_laevigata	RLG00000026397
rosa_multiflora	Rmu_sc0031430.1_g000003 Rmu_sc0031430.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280130 Rroxscaffold_4G00280150
rosa_rugosa	Rorug01G0412300 Rorug01G0412400
rosa_samantha	Rh1AG434800 Rh1AG435100 Rh1BG392600 Rh1CG405300 Rh1DG423400
rosa_wichuraiana	Rw1G038010 Rw1G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	532
AccII	CGCG	2 cut(s)	196, 315
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	1 cut(s)	61
AcsI	RAATTY	2 cut(s)	433, 666
AcuI	CTGAAG	2 cut(s)	729, 846
AfaI	GTAC	2 cut(s)	369, 823
AfiI	CCNNNNNNNGG	1 cut(s)	789
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	4 cut(s)	395, 508, 542, 640
AjnI	CCWGG	2 cut(s)	384, 428
AluBI	AGCT	4 cut(s)	88, 93, 215, 323
AluI	AGCT	4 cut(s)	88, 93, 215, 323
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	4 cut(s)	144, 179, 211, 409
AlwI	GGATC	1 cut(s)	61
AoxI	GGCC	3 cut(s)	240, 425, 798
ApeKI	GCWGC	2 cut(s)	212, 440
ApoI	RAATTY	2 cut(s)	433, 666
Asp700I	GAANNNNTTC	1 cut(s)	635
AspLEI	GCGC	5 cut(s)	37, 110, 198, 315, 317
AspS9I	GGNCC	3 cut(s)	426, 780, 798
AsuHPI	GGTGA	3 cut(s)	154, 209, 681
AvaII	GGWCC	1 cut(s)	780
BaeGI	GKGCMC	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	90
BbsI	GAAGAC	2 cut(s)	197, 814
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	224, 452
BccI	CCATC	1 cut(s)	354
BciT130I	CCWGG	2 cut(s)	386, 430
BciVI	GTATCC	1 cut(s)	581
BcoDI	GTCTC	4 cut(s)	144, 179, 211, 409
BfaI	CTAG	2 cut(s)	693, 789
BfmI	CTRYAG	1 cut(s)	592
BfoI	RGCGCY	1 cut(s)	111
BfuI	GTATCC	1 cut(s)	581
BisI	GCNGC	2 cut(s)	213, 441
BlpI	GCTNAGC	1 cut(s)	89
BlsI	GCNGC	2 cut(s)	214, 442
BmcAI	AGTACT	1 cut(s)	823
Bme1390I	CCNGG	2 cut(s)	386, 430
Bme18I	GGWCC	1 cut(s)	780
BmgT120I	GGNCC	3 cut(s)	426, 780, 798
BmiI	GGNNCC	1 cut(s)	781
BmrFI	CCNGG	2 cut(s)	386, 430
BpiI	GAAGAC	2 cut(s)	197, 814
BpmI	CTGGAG	2 cut(s)	119, 212
Bpu1102I	GCTNAGC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	428
Bsc4I	CCNNNNNNNGG	1 cut(s)	789
Bse118I	RCCGGY	1 cut(s)	453
Bse1I	ACTGG	4 cut(s)	136, 528, 579, 819
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	386, 430
BseDI	CCNNGG	1 cut(s)	428
BseLI	CCNNNNNNNGG	1 cut(s)	789
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	3 cut(s)	103, 115, 222
BseNI	ACTGG	4 cut(s)	136, 528, 579, 819
BsePI	GCGCGC	1 cut(s)	313
BseRI	GAGGAG	2 cut(s)	212, 215
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	2 cut(s)	224, 452
Bsh1236I	CGCG	2 cut(s)	196, 315
BshFI	GGCC	3 cut(s)	242, 427, 800
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	454
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	1 cut(s)	789
BsmAI	GTCTC	4 cut(s)	144, 179, 211, 409
BsmBI	CGTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	503
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	3 cut(s)	242, 427, 800
Bsp1286I	GDGCHC	2 cut(s)	90, 126
Bsp1407I	TGTACA	1 cut(s)	367
Bsp143I	GATC	1 cut(s)	53
Bsp1720I	GCTNAGC	1 cut(s)	89
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	3 cut(s)	242, 427, 800
BspCNI	CTCAG	3 cut(s)	102, 114, 221
BspFNI	CGCG	2 cut(s)	196, 315
BspLI	GGNNCC	1 cut(s)	781
BspPI	GGATC	1 cut(s)	61
BsrDI	GCAATG	1 cut(s)	300
BsrFI	RCCGGY	1 cut(s)	453
BsrGI	TGTACA	1 cut(s)	367
BsrI	ACTGG	4 cut(s)	136, 528, 579, 819
BssAI	RCCGGY	1 cut(s)	453
BssECI	CCNNGG	1 cut(s)	428
BssHII	GCGCGC	1 cut(s)	313
BssMI	GATC	1 cut(s)	53
Bst2UI	CCWGG	2 cut(s)	386, 430
Bst4CI	ACNGT	2 cut(s)	593, 764
Bst6I	CTCTTC	1 cut(s)	327
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstAUI	TGTACA	1 cut(s)	367
BstC8I	GCNNGC	3 cut(s)	315, 325, 425
BstDEI	CTNAG	4 cut(s)	89, 101, 208, 564
BstENI	CCTNNNNNAGG	1 cut(s)	787
BstFNI	CGCG	2 cut(s)	196, 315
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	5 cut(s)	37, 110, 198, 315, 317
BstKTI	GATC	1 cut(s)	56
BstMAI	GTCTC	4 cut(s)	144, 179, 211, 409
BstMBI	GATC	1 cut(s)	53
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 299
BstNI	CCWGG	2 cut(s)	386, 430
BstNSI	RCATGY	1 cut(s)	374
BstSCI	CCNGG	2 cut(s)	384, 428
BstSFI	CTRYAG	1 cut(s)	592
BstSLI	GKGCMC	1 cut(s)	126
BstUI	CGCG	2 cut(s)	196, 315
BstV1I	GCAGC	2 cut(s)	224, 452
BstV2I	GAAGAC	2 cut(s)	197, 814
BsuI	GTATCC	1 cut(s)	581
BsuRI	GGCC	3 cut(s)	242, 427, 800
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	2 cut(s)	205, 769
Cac8I	GCNNGC	3 cut(s)	315, 325, 425
CfoI	GCGC	5 cut(s)	37, 110, 198, 315, 317
Cfr10I	RCCGGY	1 cut(s)	453
Cfr13I	GGNCC	3 cut(s)	426, 780, 798
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	2 cut(s)	368, 822
CviAII	CATG	2 cut(s)	371, 628
CviQI	GTAC	2 cut(s)	368, 822
DdeI	CTNAG	4 cut(s)	89, 101, 208, 564
DpnI	GATC	1 cut(s)	55
DpnII	GATC	1 cut(s)	53
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	780
Eco53kI	GAGCTC	1 cut(s)	88
Eco57I	CTGAAG	2 cut(s)	729, 846
EcoICRI	GAGCTC	1 cut(s)	88
EcoNI	CCTNNNNNAGG	1 cut(s)	787
EcoO109I	RGGNCCY	1 cut(s)	780
EcoRII	CCWGG	2 cut(s)	384, 428
EcoT38I	GRGCYC	1 cut(s)	90
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	2 cut(s)	374, 631
FaiI	YATR	8 cut(s)	285, 372, 525, 629, 648, 728, 796, 833
FalI	AAGNNNNNCTT	4 cut(s)	251, 283, 348, 380
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	2 cut(s)	370, 627
FblI	GTMKAC	1 cut(s)	532
Fnu4HI	GCNGC	2 cut(s)	213, 441
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	2 cut(s)	213, 441
FspBI	CTAG	2 cut(s)	693, 789
GlaI	GCGC	5 cut(s)	36, 109, 197, 314, 316
GluI	GCNGC	2 cut(s)	213, 441
GsuI	CTGGAG	2 cut(s)	119, 212
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	3 cut(s)	242, 427, 800
HapII	CCGG	1 cut(s)	454
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	5 cut(s)	37, 110, 198, 315, 317
Hin1II	CATG	2 cut(s)	374, 631
Hin6I	GCGC	5 cut(s)	35, 108, 196, 313, 315
HinP1I	GCGC	5 cut(s)	35, 108, 196, 313, 315
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HinfI	GANTC	5 cut(s)	44, 130, 491, 722, 767
HpaII	CCGG	1 cut(s)	454
HphI	GGTGA	3 cut(s)	154, 209, 681
Hpy166II	GTNNAC	2 cut(s)	533, 706
Hpy188I	TCNGA	4 cut(s)	104, 672, 748, 772
Hpy188III	TCNNGA	3 cut(s)	182, 229, 662
Hpy8I	GTNNAC	2 cut(s)	533, 706
HpyAV	CCTTC	1 cut(s)	188
HpyCH4III	ACNGT	2 cut(s)	593, 764
HpyCH4IV	ACGT	1 cut(s)	479
HpyCH4V	TGCA	4 cut(s)	81, 293, 440, 603
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 299
HpyF3I	CTNAG	4 cut(s)	89, 101, 208, 564
HpySE526I	ACGT	1 cut(s)	479
Hsp92II	CATG	2 cut(s)	374, 631
HspAI	GCGC	5 cut(s)	35, 108, 196, 313, 315
Kzo9I	GATC	1 cut(s)	53
Lsp1109I	GCAGC	2 cut(s)	224, 452
MaeI	CTAG	2 cut(s)	693, 789
MaeII	ACGT	1 cut(s)	479
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	1 cut(s)	55
MboI	GATC	1 cut(s)	53
MfeI	CAATTG	2 cut(s)	11, 609
MhlI	GDGCHC	2 cut(s)	90, 126
MluCI	AATT	9 cut(s)	11, 57, 96, 433, 556, 569, 609, 666, 675
MlyI	GAGTC	1 cut(s)	485
MmeI	TCCRAC	1 cut(s)	696
MnlI	CCTC	8 cut(s)	98, 170, 230, 232, 233, 236, 303, 459
MroXI	GAANNNNTTC	1 cut(s)	635
MseI	TTAA	2 cut(s)	95, 572
MspI	CCGG	1 cut(s)	454
MspR9I	CCNGG	2 cut(s)	386, 430
MunI	CAATTG	2 cut(s)	11, 609
Mva1269I	GAATGC	1 cut(s)	295
MvaI	CCWGG	2 cut(s)	386, 430
MvnI	CGCG	2 cut(s)	196, 315
MwoI	GCNNNNNNNGC	2 cut(s)	209, 299
NdeII	GATC	1 cut(s)	53
NlaIII	CATG	2 cut(s)	374, 631
NlaIV	GGNNCC	1 cut(s)	781
NspI	RCATGY	1 cut(s)	374
PauI	GCGCGC	1 cut(s)	313
PciI	ACATGT	1 cut(s)	370
PctI	GAATGC	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	635
PfeI	GAWTC	4 cut(s)	44, 130, 722, 767
PfoI	TCCNGGA	1 cut(s)	384
PkrI	GCNGC	2 cut(s)	214, 442
PleI	GAGTC	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	485
PpuMI	RGGWCCY	1 cut(s)	780
PscI	ACATGT	1 cut(s)	370
Psp124BI	GAGCTC	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	780
Psp6I	CCWGG	2 cut(s)	384, 428
PspGI	CCWGG	2 cut(s)	384, 428
PspN4I	GGNNCC	1 cut(s)	781
PspPI	GGNCC	3 cut(s)	426, 780, 798
PspPPI	RGGWCCY	1 cut(s)	780
PteI	GCGCGC	1 cut(s)	313
RsaI	GTAC	2 cut(s)	369, 823
RsaNI	GTAC	2 cut(s)	368, 822
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	95, 572
SatI	GCNGC	2 cut(s)	213, 441
Sau3AI	GATC	1 cut(s)	53
Sau96I	GGNCC	3 cut(s)	426, 780, 798
ScaI	AGTACT	1 cut(s)	823
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	2 cut(s)	386, 430
SduI	GDGCHC	2 cut(s)	90, 126
SfcI	CTRYAG	1 cut(s)	592
SinI	GGWCC	1 cut(s)	780
Sse9I	AATT	9 cut(s)	11, 57, 96, 433, 556, 569, 609, 666, 675
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	2 cut(s)	693, 789
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	2 cut(s)	384, 428
TaaI	ACNGT	2 cut(s)	593, 764
TaiI	ACGT	1 cut(s)	482
TaqI	TCGA	1 cut(s)	805
TasI	AATT	9 cut(s)	11, 57, 96, 433, 556, 569, 609, 666, 675
TatI	WGTACW	2 cut(s)	367, 821
TfiI	GAWTC	4 cut(s)	44, 130, 722, 767
Tru1I	TTAA	2 cut(s)	95, 572
Tru9I	TTAA	2 cut(s)	95, 572
TscAI	CASTG	2 cut(s)	205, 769
TseI	GCWGC	2 cut(s)	212, 440
TspDTI	ATGAA	3 cut(s)	203, 549, 644
TspRI	CASTG	2 cut(s)	205, 769
VpaK11BI	GGWCC	1 cut(s)	780
XagI	CCTNNNNNAGG	1 cut(s)	787
XapI	RAATTY	2 cut(s)	433, 666
XceI	RCATGY	1 cut(s)	374
XmiI	GTMKAC	1 cut(s)	532
XmnI	GAANNNNTTC	1 cut(s)	635
XspI	CTAG	2 cut(s)	693, 789
ZrmI	AGTACT	1 cut(s)	823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.