Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004452

Physical Location & Seq

Genomic Coordinates Reverse (-)

67082722 .. 67085057

Gene Structure 2336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG405300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGTCAAAACAATTGGAGAGATACCAAAAACTTGCGCTGAAAGAATCTTTAGGATCAATTCACGGATACCCTTTAGTCTGCAAAGAGCTCAGCTTAATTCTCAGAGGCGCTTACAGAAAAGTGCCCAAGAATCTCCAGTCTCTTATCTTCCAAGATACCCTCACCGCCTTTCGTCTCCTTCCTGAAATGAAGACGCGCAGTGCTGTCTTAGCAGCTCATGTCCTCCTCCAGAGCGTTGAGGCCACTTTGCCGAAGCAAAAGAAGAACTTGGCTGTTACAGAATATAAGAATGCAATGGTTGCTCACAAGAGGCGCACTAAAGCTCGCCAAGAAGAGAATGTTGCCCATCTGCCACAAGATGTTCTTGTACATGTATTCAGTTTCCTGGATTTTCAATCTTTAGTCTCTGTTGGGCAAGTCTGCTGGCCATGGAATTTTGCAGCAAGTGATAACCGGCTGTGGCAGAGGCAATACGCTACGTTCTTTAGGGACTCTTACAATGACTTGAATATCAAGGAACAGCATACCAGTAGACAGGTTGAAGATGATAGTTATACGCTGGTTTGGAGAAAAGCTTTCAAAAGAGCATATAAAGGTGAATCATTAGATGTCTGCCTTGCTGGATCTGTTAAAAGTGCATTTTGTCACCGGAGAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

219

Amino Acids

25.35

Weight (kDa)

9.76

Isoelectric Point (pI)

53.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At5g52880_ARM	PF24104	6 - 104	6.3e-42	F-box protein At5g52880 ARM repeat
F-box-like	PF12937	115 - 158	9.7e-16	F-box-like
F-box	PF00646	116 - 155	1.5e-08	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52880
fragaria_vesca	FvH4_7g30600 FvH4_7g30600
malus_domestica	MD01G1211200.v1.1
prunus_persica	Prupe.2G291600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G304000_v2.0.a1
pyrus_communis	pycom01g22170
rosa_chinensis	RchiOBHm_Chr1g0378761 RchiOBHm_Chr1g0379101 RchiOBHm_Chr1g0379281 RchiOBHm_Chr1g0379501 RchiOBHm_Chr1g0379511
rosa_laevigata	RLG00000026397
rosa_multiflora	Rmu_sc0031430.1_g000003 Rmu_sc0031430.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280130 Rroxscaffold_4G00280150
rosa_rugosa	Rorug01G0412300 Rorug01G0412400
rosa_samantha	Rh1AG434800 Rh1AG435100 Rh1BG392600 Rh1CG405300 Rh1DG423400
rosa_wichuraiana	Rw1G038010 Rw1G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	532
AccII	CGCG	1 cut(s)	196
AciI	CCGC	1 cut(s)	165
AclWI	GGATC	2 cut(s)	61, 631
AcoI	YGGCCR	1 cut(s)	425
AcsI	RAATTY	1 cut(s)	433
AfaI	GTAC	1 cut(s)	369
AflIII	ACRYGT	1 cut(s)	370
AgsI	TTSAA	4 cut(s)	395, 508, 542, 580
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	5 cut(s)	88, 93, 215, 323, 575
AluI	AGCT	5 cut(s)	88, 93, 215, 323, 575
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	3 cut(s)	144, 179, 409
AlwI	GGATC	2 cut(s)	61, 631
AoxI	GGCC	2 cut(s)	240, 425
ApeKI	GCWGC	2 cut(s)	212, 440
ApoI	RAATTY	1 cut(s)	433
AspLEI	GCGC	4 cut(s)	37, 110, 198, 315
AsuHPI	GGTGA	3 cut(s)	154, 608, 638
BaeGI	GKGCMC	1 cut(s)	126
BalI	TGGCCA	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	2 cut(s)	224, 452
BccI	CCATC	1 cut(s)	354
BciT130I	CCWGG	1 cut(s)	386
BciVI	GTATCC	1 cut(s)	59
BcoDI	GTCTC	3 cut(s)	144, 179, 409
BfoI	RGCGCY	1 cut(s)	111
BfuI	GTATCC	1 cut(s)	59
BisI	GCNGC	2 cut(s)	213, 441
BlpI	GCTNAGC	1 cut(s)	89
BlsI	GCNGC	2 cut(s)	214, 442
Bme1390I	CCNGG	1 cut(s)	386
BmrFI	CCNGG	1 cut(s)	386
BpiI	GAAGAC	1 cut(s)	197
BpmI	CTGGAG	2 cut(s)	119, 212
Bpu1102I	GCTNAGC	1 cut(s)	89
BsaJI	CCNNGG	1 cut(s)	428
BsaWI	WCCGGW	1 cut(s)	648
Bse118I	RCCGGY	1 cut(s)	453
Bse1I	ACTGG	2 cut(s)	136, 528
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	1 cut(s)	428
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	2 cut(s)	103, 115
BseNI	ACTGG	2 cut(s)	136, 528
BseRI	GAGGAG	1 cut(s)	215
BseSI	GKGCMC	1 cut(s)	126
BseXI	GCAGC	2 cut(s)	224, 452
Bsh1236I	CGCG	1 cut(s)	196
BshFI	GGCC	2 cut(s)	242, 427
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	454, 649
BslFI	GGGAC	1 cut(s)	503
BsmAI	GTCTC	3 cut(s)	144, 179, 409
BsmBI	CGTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	503
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	2 cut(s)	242, 427
Bsp1286I	GDGCHC	2 cut(s)	90, 126
Bsp1407I	TGTACA	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	53, 623
Bsp1720I	GCTNAGC	1 cut(s)	89
Bsp19I	CCATGG	1 cut(s)	428
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	2 cut(s)	242, 427
BspCNI	CTCAG	2 cut(s)	102, 114
BspFNI	CGCG	1 cut(s)	196
BspPI	GGATC	2 cut(s)	61, 631
BsrDI	GCAATG	1 cut(s)	300
BsrFI	RCCGGY	1 cut(s)	453
BsrGI	TGTACA	1 cut(s)	367
BsrI	ACTGG	2 cut(s)	136, 528
BssAI	RCCGGY	1 cut(s)	453
BssECI	CCNNGG	1 cut(s)	428
BssMI	GATC	2 cut(s)	53, 623
BssT1I	CCWWGG	1 cut(s)	428
Bst2UI	CCWGG	1 cut(s)	386
Bst6I	CTCTTC	1 cut(s)	327
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstAUI	TGTACA	1 cut(s)	367
BstC8I	GCNNGC	2 cut(s)	325, 425
BstDEI	CTNAG	3 cut(s)	89, 101, 208
BstDSI	CCRYGG	1 cut(s)	428
BstFNI	CGCG	1 cut(s)	196
BstH2I	RGCGCY	1 cut(s)	111
BstHHI	GCGC	4 cut(s)	37, 110, 198, 315
BstKTI	GATC	2 cut(s)	56, 626
BstMAI	GTCTC	3 cut(s)	144, 179, 409
BstMBI	GATC	2 cut(s)	53, 623
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 299
BstNI	CCWGG	1 cut(s)	386
BstNSI	RCATGY	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	384
BstSLI	GKGCMC	1 cut(s)	126
BstUI	CGCG	1 cut(s)	196
BstV1I	GCAGC	2 cut(s)	224, 452
BstV2I	GAAGAC	1 cut(s)	197
BstX2I	RGATCY	1 cut(s)	623
BstYI	RGATCY	1 cut(s)	623
BsuI	GTATCC	1 cut(s)	59
BsuRI	GGCC	2 cut(s)	242, 427
BtgI	CCRYGG	1 cut(s)	428
BtsI	GCAGTG	1 cut(s)	205
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	2 cut(s)	325, 425
CfoI	GCGC	4 cut(s)	37, 110, 198, 315
Cfr10I	RCCGGY	1 cut(s)	453
CseI	GACGC	1 cut(s)	202
Csp6I	GTAC	1 cut(s)	368
CviAII	CATG	3 cut(s)	218, 371, 429
CviJI	RGCY	9 cut(s)	88, 93, 215, 242, 272, 323, 427, 457, 575
CviKI_1	RGCY	9 cut(s)	88, 93, 215, 242, 272, 323, 427, 457, 575
CviQI	GTAC	1 cut(s)	368
DdeI	CTNAG	3 cut(s)	89, 101, 208
DpnI	GATC	2 cut(s)	55, 625
DpnII	GATC	2 cut(s)	53, 623
EaeI	YGGCCR	1 cut(s)	425
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Ecl136II	GAGCTC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	428
Eco24I	GRGCYC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	88
EcoICRI	GAGCTC	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	384
EcoT14I	CCWWGG	1 cut(s)	428
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	428
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	3 cut(s)	221, 374, 432
FaiI	YATR	8 cut(s)	219, 285, 372, 430, 525, 555, 589, 591
FalI	AAGNNNNNCTT	4 cut(s)	251, 283, 348, 380
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	3 cut(s)	217, 370, 428
FblI	GTMKAC	1 cut(s)	532
Fnu4HI	GCNGC	2 cut(s)	213, 441
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	2 cut(s)	213, 441
GlaI	GCGC	4 cut(s)	36, 109, 197, 314
GluI	GCNGC	2 cut(s)	213, 441
GsuI	CTGGAG	2 cut(s)	119, 212
HaeII	RGCGCY	1 cut(s)	111
HaeIII	GGCC	2 cut(s)	242, 427
HapII	CCGG	2 cut(s)	454, 649
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	4 cut(s)	37, 110, 198, 315
Hin1II	CATG	3 cut(s)	221, 374, 432
Hin6I	GCGC	4 cut(s)	35, 108, 196, 313
HinP1I	GCGC	4 cut(s)	35, 108, 196, 313
HindIII	AAGCTT	1 cut(s)	573
HinfI	GANTC	5 cut(s)	44, 130, 491, 599, 654
HpaII	CCGG	2 cut(s)	454, 649
HphI	GGTGA	3 cut(s)	154, 608, 638
Hpy166II	GTNNAC	1 cut(s)	533
Hpy188I	TCNGA	1 cut(s)	104
Hpy188III	TCNNGA	2 cut(s)	182, 229
Hpy8I	GTNNAC	1 cut(s)	533
HpyAV	CCTTC	1 cut(s)	188
HpyCH4IV	ACGT	1 cut(s)	479
HpyCH4V	TGCA	4 cut(s)	81, 293, 440, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 299
HpyF3I	CTNAG	3 cut(s)	89, 101, 208
HpySE526I	ACGT	1 cut(s)	479
Hsp92II	CATG	3 cut(s)	221, 374, 432
HspAI	GCGC	4 cut(s)	35, 108, 196, 313
Kzo9I	GATC	2 cut(s)	53, 623
Lsp1109I	GCAGC	2 cut(s)	224, 452
MaeII	ACGT	1 cut(s)	479
MaeIII	GTNAC	2 cut(s)	274, 644
MalI	GATC	2 cut(s)	55, 625
MboI	GATC	2 cut(s)	53, 623
MboII	GAAGA	5 cut(s)	139, 202, 274, 344, 554
MfeI	CAATTG	1 cut(s)	11
MflI	RGATCY	1 cut(s)	623
MhlI	GDGCHC	2 cut(s)	90, 126
MlsI	TGGCCA	1 cut(s)	427
MluCI	AATT	4 cut(s)	11, 57, 96, 433
MluNI	TGGCCA	1 cut(s)	427
MlyI	GAGTC	1 cut(s)	485
MnlI	CCTC	7 cut(s)	98, 170, 232, 233, 236, 303, 459
Mox20I	TGGCCA	1 cut(s)	427
MscI	TGGCCA	1 cut(s)	427
MseI	TTAA	2 cut(s)	95, 630
Msp20I	TGGCCA	1 cut(s)	427
MspI	CCGG	2 cut(s)	454, 649
MspR9I	CCNGG	1 cut(s)	386
MunI	CAATTG	1 cut(s)	11
Mva1269I	GAATGC	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	386
MvnI	CGCG	1 cut(s)	196
MwoI	GCNNNNNNNGC	2 cut(s)	209, 299
NcoI	CCATGG	1 cut(s)	428
NdeII	GATC	2 cut(s)	53, 623
NlaIII	CATG	3 cut(s)	221, 374, 432
NmuCI	GTSAC	1 cut(s)	644
NspI	RCATGY	1 cut(s)	374
PciI	ACATGT	1 cut(s)	370
PctI	GAATGC	1 cut(s)	295
PfeI	GAWTC	4 cut(s)	44, 130, 599, 654
PfoI	TCCNGGA	1 cut(s)	384
PkrI	GCNGC	2 cut(s)	214, 442
PleI	GAGTC	1 cut(s)	485
PpsI	GAGTC	1 cut(s)	485
PscI	ACATGT	1 cut(s)	370
Psp124BI	GAGCTC	1 cut(s)	90
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PsuI	RGATCY	1 cut(s)	623
RsaI	GTAC	1 cut(s)	369
RsaNI	GTAC	1 cut(s)	368
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	2 cut(s)	95, 630
SatI	GCNGC	2 cut(s)	213, 441
Sau3AI	GATC	2 cut(s)	53, 623
SchI	GAGTC	1 cut(s)	485
ScrFI	CCNGG	1 cut(s)	386
SduI	GDGCHC	2 cut(s)	90, 126
SetI	ASST	8 cut(s)	90, 95, 217, 325, 482, 540, 577, 598
Sse9I	AATT	4 cut(s)	11, 57, 96, 433
SsiI	CCGC	1 cut(s)	165
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	1 cut(s)	428
TaiI	ACGT	1 cut(s)	482
TasI	AATT	4 cut(s)	11, 57, 96, 433
TatI	WGTACW	1 cut(s)	367
TfiI	GAWTC	4 cut(s)	44, 130, 599, 654
Tru1I	TTAA	2 cut(s)	95, 630
Tru9I	TTAA	2 cut(s)	95, 630
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	1 cut(s)	644
TseI	GCWGC	2 cut(s)	212, 440
Tsp45I	GTSAC	1 cut(s)	644
TspDTI	ATGAA	1 cut(s)	203
TspGWI	ACGGA	1 cut(s)	78
TspRI	CASTG	1 cut(s)	205
XapI	RAATTY	1 cut(s)	433
XceI	RCATGY	1 cut(s)	374
XmiI	GTMKAC	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.