Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004452

Physical Location & Seq

Genomic Coordinates Forward (+)

2772593 .. 2774062

Gene Structure 1470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026397

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAAGACGCGCAGTGCTGTCTCAGCAGCTCATCTTCTCCTCCAGAGCGTTGAGGCCACTTTGCCGAAGCAAAAGAAGAACTTGGCTGTTACAGAATATAAGAATGCAATGGTTGCTCACAAGAGGCGCACTAAAGCTCGCCAAGAAGAGAATGTTGCCCATCTGCCACAAGATGTTCTTGTACATGTATTCAGTTTCCTGGATTTTCAATCTTTAGTCTCTGTTGGGCAAGTCTGCTGGCCATGGAATTTTGCAGCAAGTGATAACCGGCTGTGGCAGAGGCAATACGCTACGTTCTTTAGGGACGCTTACAATGACTTGAATATCAAGGAACAGCACACCAGTAGACAGGTTGAAGATGATAGGTATACGCTGTTTTGGAGAAAAGCCTTCAAAAGAGCATATAAAGGTGAATCATTAGATGTGGTAACCGGGCTTGTTCCTCTGTGTTGCGGTAGCTTATATACGCCAAAATTAGACCAGTATTTGAAGGATCAAATTGTGGTTGACTATCTGTTGGAAGATTCTATATCAGTCAAATCTTCTTCAGAGAGCGATAGCGACAGTGATTCAGAAGCAGGGTCCTTTTCTAGGTTATGGGCCTATCGAAGACCCTTGACCAGTACTGAACATACGCCTTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0005575 GO:0005622 GO:0005623 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019538 GO:0019941 GO:0030163 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0071704 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

216

Amino Acids

24.76

Weight (kDa)

8.36

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
At5g52880_ARM	PF24104	1 - 42	4.6e-13	F-box protein At5g52880 ARM repeat
F-box-like	PF12937	53 - 96	9.4e-16	F-box-like
F-box	PF00646	54 - 93	1.5e-08	F-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004452)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52880
fragaria_vesca	FvH4_7g30600 FvH4_7g30600
malus_domestica	MD01G1211200.v1.1
prunus_persica	Prupe.2G291600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G303600_v2.0.a1 Prupe.2G304000_v2.0.a1
pyrus_communis	pycom01g22170
rosa_chinensis	RchiOBHm_Chr1g0378761 RchiOBHm_Chr1g0379101 RchiOBHm_Chr1g0379281 RchiOBHm_Chr1g0379501 RchiOBHm_Chr1g0379511
rosa_laevigata	RLG00000026397
rosa_multiflora	Rmu_sc0031430.1_g000003 Rmu_sc0031430.1_g000004
rosa_roxburghii	Rroxscaffold_4G00280130 Rroxscaffold_4G00280150
rosa_rugosa	Rorug01G0412300 Rorug01G0412400
rosa_samantha	Rh1AG434800 Rh1AG435100 Rh1BG392600 Rh1CG405300 Rh1DG423400
rosa_wichuraiana	Rw1G038010 Rw1G038020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	346, 368
AccII	CGCG	1 cut(s)	10
AciI	CCGC	1 cut(s)	453
AclWI	GGATC	1 cut(s)	501
AcoI	YGGCCR	1 cut(s)	239
AcsI	RAATTY	1 cut(s)	247
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	2 cut(s)	183, 625
AfiI	CCNNNNNNNGG	1 cut(s)	591
AflIII	ACRYGT	1 cut(s)	184
AgsI	TTSAA	5 cut(s)	209, 322, 356, 394, 490
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	3 cut(s)	29, 137, 459
AluI	AGCT	3 cut(s)	29, 137, 459
Alw26I	GTCTC	2 cut(s)	25, 223
AlwI	GGATC	1 cut(s)	501
AoxI	GGCC	3 cut(s)	54, 239, 600
ApeKI	GCWGC	2 cut(s)	26, 254
ApoI	RAATTY	1 cut(s)	247
AspLEI	GCGC	2 cut(s)	12, 129
AspS9I	GGNCC	2 cut(s)	582, 600
AsuC2I	CCSGG	1 cut(s)	433
AsuHPI	GGTGA	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	582
BalI	TGGCCA	1 cut(s)	241
BbsI	GAAGAC	2 cut(s)	11, 616
BbvI	GCAGC	2 cut(s)	38, 266
BccI	CCATC	1 cut(s)	168
BciT130I	CCWGG	1 cut(s)	200
BcnI	CCSGG	1 cut(s)	433
BcoDI	GTCTC	2 cut(s)	25, 223
BfaI	CTAG	1 cut(s)	591
BisI	GCNGC	2 cut(s)	27, 255
BlsI	GCNGC	2 cut(s)	28, 256
BmcAI	AGTACT	1 cut(s)	625
Bme1390I	CCNGG	2 cut(s)	200, 433
Bme18I	GGWCC	1 cut(s)	582
BmgT120I	GGNCC	2 cut(s)	582, 600
BmiI	GGNNCC	1 cut(s)	583
BmrFI	CCNGG	2 cut(s)	200, 433
BpiI	GAAGAC	2 cut(s)	11, 616
BpmI	CTGGAG	1 cut(s)	26
BpuMI	CCSGG	1 cut(s)	433
BsaJI	CCNNGG	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	1 cut(s)	591
Bse118I	RCCGGY	1 cut(s)	267
Bse1I	ACTGG	3 cut(s)	342, 481, 621
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	200
BseDI	CCNNGG	1 cut(s)	242
BseLI	CCNNNNNNNGG	1 cut(s)	591
BseMI	GCAATG	1 cut(s)	114
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	3 cut(s)	342, 481, 621
BseRI	GAGGAG	1 cut(s)	29
BseXI	GCAGC	2 cut(s)	38, 266
Bsh1236I	CGCG	1 cut(s)	10
BshFI	GGCC	3 cut(s)	56, 241, 602
BsiSI	CCGG	2 cut(s)	268, 432
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	591
BsmAI	GTCTC	2 cut(s)	25, 223
BsmFI	GGGAC	1 cut(s)	317
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	3 cut(s)	56, 241, 602
Bsp1407I	TGTACA	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	493
Bsp19I	CCATGG	1 cut(s)	242
BspACI	CCGC	1 cut(s)	453
BspANI	GGCC	3 cut(s)	56, 241, 602
BspCNI	CTCAG	1 cut(s)	35
BspFNI	CGCG	1 cut(s)	10
BspLI	GGNNCC	1 cut(s)	583
BspPI	GGATC	1 cut(s)	501
BsrDI	GCAATG	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	267
BsrGI	TGTACA	1 cut(s)	181
BsrI	ACTGG	3 cut(s)	342, 481, 621
BssAI	RCCGGY	1 cut(s)	267
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	1 cut(s)	493
BssNAI	GTATAC	1 cut(s)	369
BssT1I	CCWWGG	1 cut(s)	242
Bst1107I	GTATAC	1 cut(s)	369
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	566
Bst6I	CTCTTC	1 cut(s)	141
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstAUI	TGTACA	1 cut(s)	181
BstC8I	GCNNGC	2 cut(s)	139, 239
BstDEI	CTNAG	1 cut(s)	22
BstDSI	CCRYGG	1 cut(s)	242
BstEII	GGTNACC	1 cut(s)	427
BstENI	CCTNNNNNAGG	1 cut(s)	589
BstFNI	CGCG	1 cut(s)	10
BstHHI	GCGC	2 cut(s)	12, 129
BstKTI	GATC	1 cut(s)	496
BstMAI	GTCTC	2 cut(s)	25, 223
BstMBI	GATC	1 cut(s)	493
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 113
BstNI	CCWGG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	188
BstPI	GGTNACC	1 cut(s)	427
BstSCI	CCNGG	2 cut(s)	198, 431
BstUI	CGCG	1 cut(s)	10
BstV1I	GCAGC	2 cut(s)	38, 266
BstV2I	GAAGAC	2 cut(s)	11, 616
BstZ17I	GTATAC	1 cut(s)	369
BsuRI	GGCC	3 cut(s)	56, 241, 602
BtgI	CCRYGG	1 cut(s)	242
BtsI	GCAGTG	1 cut(s)	19
BtsIMutI	CAGTG	2 cut(s)	19, 571
Cac8I	GCNNGC	2 cut(s)	139, 239
CfoI	GCGC	2 cut(s)	12, 129
Cfr10I	RCCGGY	1 cut(s)	267
Cfr13I	GGNCC	2 cut(s)	582, 600
CseI	GACGC	2 cut(s)	16, 314
Csp6I	GTAC	2 cut(s)	182, 624
CviAII	CATG	2 cut(s)	185, 243
CviQI	GTAC	2 cut(s)	182, 624
DdeI	CTNAG	1 cut(s)	22
DpnI	GATC	1 cut(s)	495
DpnII	GATC	1 cut(s)	493
EaeI	YGGCCR	1 cut(s)	239
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco130I	CCWWGG	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	582
Eco57I	CTGAAG	1 cut(s)	531
Eco91I	GGTNACC	1 cut(s)	427
EcoNI	CCTNNNNNAGG	1 cut(s)	589
EcoO109I	RGGNCCY	1 cut(s)	582
EcoO65I	GGTNACC	1 cut(s)	427
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	242
FaeI	CATG	2 cut(s)	188, 246
FalI	AAGNNNNNCTT	4 cut(s)	65, 97, 162, 194
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	2 cut(s)	184, 242
FblI	GTMKAC	2 cut(s)	346, 368
Fnu4HI	GCNGC	2 cut(s)	27, 255
Fsp4HI	GCNGC	2 cut(s)	27, 255
FspBI	CTAG	1 cut(s)	591
GlaI	GCGC	2 cut(s)	11, 128
GluI	GCNGC	2 cut(s)	27, 255
GsuI	CTGGAG	1 cut(s)	26
HaeIII	GGCC	3 cut(s)	56, 241, 602
HapII	CCGG	2 cut(s)	268, 432
HgaI	GACGC	2 cut(s)	16, 314
HhaI	GCGC	2 cut(s)	12, 129
Hin1II	CATG	2 cut(s)	188, 246
Hin6I	GCGC	2 cut(s)	10, 127
HinP1I	GCGC	2 cut(s)	10, 127
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HinfI	GANTC	3 cut(s)	413, 524, 569
HpaII	CCGG	2 cut(s)	268, 432
HphI	GGTGA	1 cut(s)	422
Hpy166II	GTNNAC	3 cut(s)	347, 369, 508
Hpy188I	TCNGA	2 cut(s)	550, 574
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	3 cut(s)	347, 369, 508
HpyAV	CCTTC	2 cut(s)	400, 484
HpyCH4III	ACNGT	1 cut(s)	566
HpyCH4IV	ACGT	1 cut(s)	293
HpyCH4V	TGCA	2 cut(s)	107, 254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 113
HpyF3I	CTNAG	1 cut(s)	22
HpySE526I	ACGT	1 cut(s)	293
Hsp92II	CATG	2 cut(s)	188, 246
HspAI	GCGC	2 cut(s)	10, 127
Kzo9I	GATC	1 cut(s)	493
Lsp1109I	GCAGC	2 cut(s)	38, 266
MaeI	CTAG	1 cut(s)	591
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	2 cut(s)	88, 427
MalI	GATC	1 cut(s)	495
MboI	GATC	1 cut(s)	493
MboII	GAAGA	9 cut(s)	16, 26, 88, 158, 368, 533, 534, 537, 621
MlsI	TGGCCA	1 cut(s)	241
MluCI	AATT	3 cut(s)	247, 473, 498
MluNI	TGGCCA	1 cut(s)	241
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	5 cut(s)	46, 50, 117, 273, 453
Mox20I	TGGCCA	1 cut(s)	241
MscI	TGGCCA	1 cut(s)	241
Msp20I	TGGCCA	1 cut(s)	241
MspI	CCGG	2 cut(s)	268, 432
MspR9I	CCNGG	2 cut(s)	200, 433
Mva1269I	GAATGC	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	10
MwoI	GCNNNNNNNGC	2 cut(s)	23, 113
NciI	CCSGG	1 cut(s)	433
NcoI	CCATGG	1 cut(s)	242
NdeII	GATC	1 cut(s)	493
NlaIII	CATG	2 cut(s)	188, 246
NlaIV	GGNNCC	1 cut(s)	583
NspI	RCATGY	1 cut(s)	188
PciI	ACATGT	1 cut(s)	184
PctI	GAATGC	1 cut(s)	109
PfeI	GAWTC	3 cut(s)	413, 524, 569
PfoI	TCCNGGA	1 cut(s)	198
PkrI	GCNGC	2 cut(s)	28, 256
PpuMI	RGGWCCY	1 cut(s)	582
PscI	ACATGT	1 cut(s)	184
Psp5II	RGGWCCY	1 cut(s)	582
Psp6I	CCWGG	1 cut(s)	198
PspEI	GGTNACC	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	583
PspPI	GGNCC	2 cut(s)	582, 600
PspPPI	RGGWCCY	1 cut(s)	582
RsaI	GTAC	2 cut(s)	183, 625
RsaNI	GTAC	2 cut(s)	182, 624
SatI	GCNGC	2 cut(s)	27, 255
Sau3AI	GATC	1 cut(s)	493
Sau96I	GGNCC	2 cut(s)	582, 600
ScaI	AGTACT	1 cut(s)	625
ScrFI	CCNGG	2 cut(s)	200, 433
SetI	ASST	8 cut(s)	31, 139, 296, 354, 368, 412, 461, 596
SinI	GGWCC	1 cut(s)	582
Sse9I	AATT	3 cut(s)	247, 473, 498
SsiI	CCGC	1 cut(s)	453
SspMI	CTAG	1 cut(s)	591
StyD4I	CCNGG	2 cut(s)	198, 431
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	1 cut(s)	566
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	1 cut(s)	607
TasI	AATT	3 cut(s)	247, 473, 498
TatI	WGTACW	2 cut(s)	181, 623
TfiI	GAWTC	3 cut(s)	413, 524, 569
TscAI	CASTG	2 cut(s)	19, 571
TseI	GCWGC	2 cut(s)	26, 254
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	2 cut(s)	19, 571
VpaK11BI	GGWCC	1 cut(s)	582
XagI	CCTNNNNNAGG	1 cut(s)	589
XapI	RAATTY	1 cut(s)	247
XceI	RCATGY	1 cut(s)	188
XmiI	GTMKAC	2 cut(s)	346, 368
XspI	CTAG	1 cut(s)	591
ZrmI	AGTACT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.