Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001929

Physical Location & Seq

Genomic Coordinates Reverse (-)

6180180 .. 6181189

Gene Structure 1010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1035200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAACGCTGGGTCCGTTTCCCTCATCTATTTCCTTCTCTCCATCACTCTCACATCCAAATTCACTGCTTCTCAGATTCCATTTCAGGTATTTATAACCTCTCTCTGTCACTCTCCCTCCCTCCCTCAGAGACTAATGTGTTTTCGGGTGGATGGTGATCAGAGGTTCAATTGGGAATCAAGCAAGAAAGGAGGATGGTACAACATTTTAAAGCAGTCTGTACAAGACCTAGCTAGTTCTGGAATCACAAATGCTTGTCTTCCTCCACCCTCTCATGCTATTTCAGATGATGGTATCACATATGGAATACAGTCTGTGGCAGATATAGTTATAAACCACAGAACTGCAGAGAAGCAAGACGAGAGAGGAATATGGTGCATCTTCAAAGGAGGAATTGACGATAATCGTCTTGATTGGGGCCCATCTCTTATTTGCAGCAATGACACGGCTTATTCTGATGGCAAGGGGAACTCTGACACTGGAGAGGACTTTGGCGCCGCTCCTGACATTGACCACAAAAACACTAGGGTCCAGAATGAGCTCTCGGATTGGATGAATTGGTTAAAGACTGATATCGGATTGAGTGGTGGGAGATTTTATATTGTCAAGGGATATGCTCCTGAATTTACCAAGTTGTATGCGACAAACACAAGTCCAAATTTCACATTAGGGGAACTTTGGAATTCCCTTTCATATGGAAGTGATGGAAATCCGAACCCTGATCAGGATGCACATCGTGGAGCGTTAGTGGGATGGGTGGAGAGTGCTGGAGGAGATGTCACAGCATTTGATTTCACAACTAAAGGGATACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko04973 map00500 map01100 map04973

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

272

Amino Acids

29.68

Weight (kDa)

4.86

Isoelectric Point (pI)

31.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25000
fragaria_vesca	FvH4_2g06030 FvH4_2g06030 FvH4_2g06030 FvH4_2g06030 FvH4_2g06030 FvH4_2g06030 FvH4_2g06030 FvH4_2g06030 FvH4_2g06030
malus_domestica	MD00G1035200.v1.1 MD05G1081100.v1.1 MD05G1081200.v1.1
prunus_persica	Prupe.8G125500_v2.0.a1
pyrus_communis	pycom05g07460 pycom10g07850
rosa_chinensis	RchiOBHm_Chr6g0257251 RchiOBHm_Chr6g0257281 RchiOBHm_Chr6g0257311
rosa_laevigata	RLG00000014683 RLG00000014684 RLG00000014685 RLG00000014687
rosa_multiflora	Rmu_sc0000820.1_g000005 Rmu_sc0002648.1_g000009 Rmu_sc0008660.1_g000002
rosa_roxburghii	Rroxscaffold_7G00208570 Rroxscaffold_7G00208600 Rroxscaffold_7G00208610
rosa_rugosa	Rorug04G0263800 Rorug05G0573700 Rorug05G0573800 Rorug05G0574000
rosa_samantha	Rh6AG090900 Rh6AG091400 Rh6AG091700 Rh6BG082600 Rh6BG082700 Rh6CG078700 Rh6CG079000 Rh6CG079200 Rh6DG074500 Rh6DG074800
rosa_wichuraiana	Rw6G007930 Rw6G007940 Rw6G007950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	95, 332
AccB1I	GGYRCC	1 cut(s)	494
AccBSI	CCGCTC	1 cut(s)	500
AciI	CCGC	1 cut(s)	498
AcsI	RAATTY	4 cut(s)	59, 623, 658, 682
AcyI	GRCGYC	1 cut(s)	495
AdeI	CACNNNGTG	1 cut(s)	737
AfaI	GTAC	2 cut(s)	200, 222
AfiI	CCNNNNNNNGG	1 cut(s)	724
AgsI	TTSAA	2 cut(s)	169, 385
AloI	GAACNNNNNNTCC	1 cut(s)	28
AluBI	AGCT	2 cut(s)	233, 541
AluI	AGCT	2 cut(s)	233, 541
Alw21I	GWGCWC	1 cut(s)	543
Alw26I	GTCTC	1 cut(s)	124
AoxI	GGCC	1 cut(s)	418
ApaI	GGGCCC	1 cut(s)	422
ApeKI	GCWGC	1 cut(s)	435
ApoI	RAATTY	4 cut(s)	59, 623, 658, 682
AspLEI	GCGC	1 cut(s)	497
AspS9I	GGNCC	4 cut(s)	12, 418, 419, 529
AsuHPI	GGTGA	1 cut(s)	167
AvaII	GGWCC	2 cut(s)	12, 529
BaeGI	GKGCMC	1 cut(s)	422
BanI	GGYRCC	1 cut(s)	494
BanII	GRGCYC	2 cut(s)	422, 543
BbsI	GAAGAC	1 cut(s)	251
Bbv12I	GWGCWC	1 cut(s)	543
BbvI	GCAGC	1 cut(s)	447
BccI	CCATC	8 cut(s)	50, 146, 189, 284, 430, 452, 698, 747
BceAI	ACGGC	1 cut(s)	462
BciVI	GTATCC	1 cut(s)	801
BclI	TGATCA	2 cut(s)	157, 721
BcoDI	GTCTC	1 cut(s)	124
BfaI	CTAG	3 cut(s)	230, 234, 525
BfmI	CTRYAG	1 cut(s)	345
BfoI	RGCGCY	1 cut(s)	498
BfuI	GTATCC	1 cut(s)	801
BisI	GCNGC	2 cut(s)	436, 498
BlsI	GCNGC	2 cut(s)	437, 499
Bme18I	GGWCC	2 cut(s)	12, 529
BmgT120I	GGNCC	4 cut(s)	12, 418, 419, 529
BmiI	GGNNCC	5 cut(s)	13, 419, 420, 496, 530
BmsI	GCATC	2 cut(s)	387, 718
BpiI	GAAGAC	1 cut(s)	251
BpmI	CTGGAG	2 cut(s)	501, 789
BsaBI	GATNNNNATC	3 cut(s)	156, 708, 732
BsaHI	GRCGYC	1 cut(s)	495
BsaXI	ACNNNNNCTCC	6 cut(s)	101, 131, 732, 762, 762, 792
Bsc4I	CCNNNNNNNGG	1 cut(s)	724
Bse1I	ACTGG	1 cut(s)	484
Bse3DI	GCAATG	1 cut(s)	445
Bse8I	GATNNNNATC	3 cut(s)	156, 708, 732
BseGI	GGATG	6 cut(s)	53, 157, 200, 558, 733, 758
BseJI	GATNNNNATC	3 cut(s)	156, 708, 732
BseLI	CCNNNNNNNGG	1 cut(s)	724
BseMI	GCAATG	1 cut(s)	445
BseMII	CTCAG	2 cut(s)	86, 140
BseNI	ACTGG	1 cut(s)	484
BseRI	GAGGAG	1 cut(s)	786
BseSI	GKGCMC	1 cut(s)	422
BseXI	GCAGC	1 cut(s)	447
BseYI	CCCAGC	1 cut(s)	8
BshFI	GGCC	1 cut(s)	420
BshNI	GGYRCC	1 cut(s)	494
BsiHKAI	GWGCWC	1 cut(s)	543
BslI	CCNNNNNNNGG	1 cut(s)	724
BsmAI	GTCTC	1 cut(s)	124
BsnI	GGCC	1 cut(s)	420
Bsp120I	GGGCCC	1 cut(s)	418
Bsp1286I	GDGCHC	2 cut(s)	422, 543
Bsp1407I	TGTACA	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	157, 721
BspACI	CCGC	1 cut(s)	498
BspANI	GGCC	1 cut(s)	420
BspCNI	CTCAG	2 cut(s)	85, 139
BspLI	GGNNCC	5 cut(s)	13, 419, 420, 496, 530
BspMAI	CTGCAG	1 cut(s)	349
BspT107I	GGYRCC	1 cut(s)	494
BsrBI	CCGCTC	1 cut(s)	500
BsrDI	GCAATG	1 cut(s)	445
BsrGI	TGTACA	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	484
BssMI	GATC	2 cut(s)	157, 721
BssNI	GRCGYC	1 cut(s)	495
Bst4CI	ACNGT	1 cut(s)	312
BstACI	GRCGYC	1 cut(s)	495
BstAUI	TGTACA	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	72, 126
BstF5I	GGATG	6 cut(s)	53, 157, 200, 558, 733, 758
BstH2I	RGCGCY	1 cut(s)	498
BstHHI	GCGC	1 cut(s)	497
BstKTI	GATC	2 cut(s)	160, 724
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	2 cut(s)	157, 721
BstSFI	CTRYAG	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	422
BstV1I	GCAGC	1 cut(s)	447
BstV2I	GAAGAC	1 cut(s)	251
BsuI	GTATCC	1 cut(s)	801
BsuRI	GGCC	1 cut(s)	420
BtsCI	GGATG	6 cut(s)	53, 157, 200, 558, 733, 758
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	2 cut(s)	63, 477
CfoI	GCGC	1 cut(s)	497
Cfr13I	GGNCC	4 cut(s)	12, 418, 419, 529
Csp6I	GTAC	2 cut(s)	199, 221
CviAII	CATG	1 cut(s)	275
CviJI	RGCY	4 cut(s)	233, 420, 449, 541
CviKI_1	RGCY	4 cut(s)	233, 420, 449, 541
CviQI	GTAC	2 cut(s)	199, 221
DdeI	CTNAG	2 cut(s)	72, 126
DinI	GGCGCC	1 cut(s)	496
DpnI	GATC	2 cut(s)	159, 723
DpnII	GATC	2 cut(s)	157, 721
DraI	TTTAAA	1 cut(s)	210
DraIII	CACNNNGTG	1 cut(s)	737
Ecl136II	GAGCTC	1 cut(s)	541
Eco24I	GRGCYC	2 cut(s)	422, 543
Eco32I	GATATC	1 cut(s)	574
Eco47I	GGWCC	2 cut(s)	12, 529
Eco53kI	GAGCTC	1 cut(s)	541
EcoICRI	GAGCTC	1 cut(s)	541
EcoO109I	RGGNCCY	1 cut(s)	418
EcoRI	GAATTC	1 cut(s)	682
EcoRV	GATATC	1 cut(s)	574
EcoT38I	GRGCYC	2 cut(s)	422, 543
EgeI	GGCGCC	1 cut(s)	496
EheI	GGCGCC	1 cut(s)	496
FaeI	CATG	1 cut(s)	278
FalI	AAGNNNNNCTT	1 cut(s)	795
FatI	CATG	1 cut(s)	274
FauNDI	CATATG	2 cut(s)	301, 694
FbaI	TGATCA	2 cut(s)	157, 721
Fnu4HI	GCNGC	2 cut(s)	436, 498
FokI	GGATG	6 cut(s)	40, 164, 207, 565, 740, 765
FriOI	GRGCYC	2 cut(s)	422, 543
Fsp4HI	GCNGC	2 cut(s)	436, 498
FspBI	CTAG	3 cut(s)	230, 234, 525
GlaI	GCGC	1 cut(s)	496
GluI	GCNGC	2 cut(s)	436, 498
GsaI	CCCAGC	1 cut(s)	12
GsuI	CTGGAG	2 cut(s)	501, 789
HaeII	RGCGCY	1 cut(s)	498
HaeIII	GGCC	1 cut(s)	420
HhaI	GCGC	1 cut(s)	497
Hin1I	GRCGYC	1 cut(s)	495
Hin1II	CATG	1 cut(s)	278
Hin6I	GCGC	1 cut(s)	495
HinP1I	GCGC	1 cut(s)	495
HinfI	GANTC	3 cut(s)	76, 176, 243
HphI	GGTGA	1 cut(s)	167
Hpy188I	TCNGA	9 cut(s)	75, 129, 162, 286, 457, 475, 547, 578, 714
Hpy188III	TCNNGA	6 cut(s)	240, 410, 503, 532, 620, 725
HpyAV	CCTTC	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4V	TGCA	4 cut(s)	347, 378, 435, 731
HpyF3I	CTNAG	2 cut(s)	72, 126
Hsp92I	GRCGYC	1 cut(s)	495
Hsp92II	CATG	1 cut(s)	278
HspAI	GCGC	1 cut(s)	495
KasI	GGCGCC	1 cut(s)	494
Ksp22I	TGATCA	2 cut(s)	157, 721
Kzo9I	GATC	2 cut(s)	157, 721
LmnI	GCTCC	3 cut(s)	505, 622, 740
LpnPI	CCDG	9 cut(s)	71, 225, 465, 516, 545, 633, 710, 732, 753
Lsp1109I	GCAGC	1 cut(s)	447
LweI	GCATC	2 cut(s)	387, 718
MaeI	CTAG	3 cut(s)	230, 234, 525
MaeIII	GTNAC	2 cut(s)	107, 778
MalI	GATC	2 cut(s)	159, 723
MbiI	CCGCTC	1 cut(s)	500
MboI	GATC	2 cut(s)	157, 721
MboII	GAAGA	2 cut(s)	251, 373
MfeI	CAATTG	1 cut(s)	169
MhlI	GDGCHC	2 cut(s)	422, 543
MluCI	AATT	7 cut(s)	59, 169, 393, 556, 623, 658, 682
Mly113I	GGCGCC	1 cut(s)	495
MseI	TTAA	2 cut(s)	209, 563
MunI	CAATTG	1 cut(s)	169
NarI	GGCGCC	1 cut(s)	495
NdeI	CATATG	2 cut(s)	301, 694
NdeII	GATC	2 cut(s)	157, 721
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	5 cut(s)	13, 419, 420, 496, 530
NmuCI	GTSAC	2 cut(s)	107, 778
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PfeI	GAWTC	3 cut(s)	76, 176, 243
PkrI	GCNGC	2 cut(s)	437, 499
PluTI	GGCGCC	1 cut(s)	498
PsiI	TTATAA	2 cut(s)	95, 332
Psp124BI	GAGCTC	1 cut(s)	543
PspFI	CCCAGC	1 cut(s)	8
PspN4I	GGNNCC	5 cut(s)	13, 419, 420, 496, 530
PspOMI	GGGCCC	1 cut(s)	418
PspPI	GGNCC	4 cut(s)	12, 418, 419, 529
PstI	CTGCAG	1 cut(s)	349
RsaI	GTAC	2 cut(s)	200, 222
RsaNI	GTAC	2 cut(s)	199, 221
SacI	GAGCTC	1 cut(s)	543
SaqAI	TTAA	2 cut(s)	209, 563
SatI	GCNGC	2 cut(s)	436, 498
Sau3AI	GATC	2 cut(s)	157, 721
Sau96I	GGNCC	4 cut(s)	12, 418, 419, 529
SduI	GDGCHC	2 cut(s)	422, 543
SetI	ASST	6 cut(s)	90, 101, 167, 231, 235, 543
SfaNI	GCATC	2 cut(s)	387, 718
SfcI	CTRYAG	1 cut(s)	345
SfoI	GGCGCC	1 cut(s)	496
SinI	GGWCC	2 cut(s)	12, 529
Sse9I	AATT	7 cut(s)	59, 169, 393, 556, 623, 658, 682
SsiI	CCGC	1 cut(s)	498
SspDI	GGCGCC	1 cut(s)	494
SspMI	CTAG	3 cut(s)	230, 234, 525
SstI	GAGCTC	1 cut(s)	543
TaaI	ACNGT	1 cut(s)	312
TasI	AATT	7 cut(s)	59, 169, 393, 556, 623, 658, 682
TatI	WGTACW	1 cut(s)	220
TauI	GCSGC	1 cut(s)	500
TfiI	GAWTC	3 cut(s)	76, 176, 243
Tru1I	TTAA	2 cut(s)	209, 563
Tru9I	TTAA	2 cut(s)	209, 563
TscAI	CASTG	2 cut(s)	70, 484
TseFI	GTSAC	2 cut(s)	107, 778
TseI	GCWGC	1 cut(s)	435
Tsp45I	GTSAC	2 cut(s)	107, 778
TspDTI	ATGAA	3 cut(s)	17, 569, 681
TspGWI	ACGGA	1 cut(s)	4
TspRI	CASTG	2 cut(s)	70, 484
VpaK11BI	GGWCC	2 cut(s)	12, 529
XapI	RAATTY	4 cut(s)	59, 623, 658, 682
XspI	CTAG	3 cut(s)	230, 234, 525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.