Prupe.8G125500_v2.0.a1

Belongs to the glycosyl hydrolase 13 family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Reverse (-)
15025219 .. 15027160
1942 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G125500.1

Sequence Viewer

Length: 1278 bp
ATGAAATCTTTAACTACTCTCTTCTGTGTCCTACTCTGCATCAATCTCCTGCCCAACTTCGCTGCTTCCCAAATCCTTTTTCAGGGGTTCAATTGGGAATCATGGAAGACGGAAGGAGGATGGTACAACTCTTTAAGGAAGTCCGTACCTGAACTAGCTTCTTCTGGAATTACACATGTTTGGCTTCCTCCACCTTCTCAGGCTGCTTCATCTGAAGGATACTTGCCTGGAAGGCTCTATGATCTCAGTGCATCAAAATATGGAAGCCAAGATGAACTGAAGTCATTGATAAGCGCCTTCCACGATAGTGGGATACAGGCTGTGGCAGACATAGTTATAAACCACAGAACTGCAGAGAAACAAGATGAGAGAGGAATATGGTGCATCTTTGAAGGAGGAACCCCAGACAATCGCCTTGATTGGGGCCCGTCTCTTATTTGCAGCGACGACACACAATATTCTGATGGCAAGGGGAACCCTGACACTGGAGCCGGCTACGATGCTGCTCCTGATATTGACCACAAAAACACAAGAGTCCAGAAAGAGCTCTCGGATTGGATGAATTGGCTAAAGACTGAAATTGGGTTCAGTGGGTGGAGATTTGATTTTGTCAGGGGATATTCTCCAGAAATTACCAAGTTGTATATGACAAACACAAGTCCAAATTTCGCAGTAGGGGAACTTTGGAATTCCCTTGCTATTGGAAGTGATGGAAAACCAGAGTACAATCAGGATGCCCATCGTCAAGAGCTTGCGGGATGGGTAGAGGGTGCTGGAGGAGCTGTTACAGCATTTGATTTTACCACTAAAGGGATACTTCAAGCTGCAGTCCAAGGGGAACTGTCGCGGCTGAAGGATCCGAATGGAAGGGCTCCAGGAATGATTGGTTTGTTGCCTGGAAAGAGTGTAACTTTCATAGACAATCATGACACAGGTTCCACACAAAAAATTTGGCCATTTCCATCAGATAAAGTCATCCAGGGATATGCCTATATTCTCACTCACCCGGGAATTCCCTCAATTTTTTATGACCACTTCTTTGACTGGGGCTTGAAAGACGAGATCACTAAACTCATTGCAATCAGATCCCGGAACGGAATCAAACCCGACAGTGCCTTGCGTATTCTAGCATCTGATGCAGATCTCTACGTAGCTGCCATAGATGAGAAAATCATAGCAAAGATTGGTTCAAGGTACGACGTTGGGAACCTTGTACCTCCAACCTACCAAGTTGCAACTTCTGGAAAGGATTACGCCGTGTGGGAGAAAAAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

426

Amino Acids

46.88

Weight (kDa)

5.27

Isoelectric Point (pI)

29.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
AccII CGCG 1 cut(s) 847
AciI CCGC 2 cut(s) 755, 847
AclWI GGATC 3 cut(s) 851, 864, 1080
AcoI YGGCCR 1 cut(s) 953
AcsI RAATTY 4 cut(s) 664, 688, 948, 1011
AcuI CTGAAG 3 cut(s) 234, 299, 872
AfaI GTAC 5 cut(s) 125, 147, 725, 1196, 1215
AfiI CCNNNNNNNGG 4 cut(s) 82, 421, 485, 810
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 5 cut(s) 91, 392, 821, 1054, 1191
AjnI CCWGG 4 cut(s) 226, 874, 895, 978
AjuI GAANNNNNNNTTGG 2 cut(s) 63, 95
AleI CACNNNNGTG 1 cut(s) 306
AluBI AGCT 6 cut(s) 158, 547, 751, 782, 824, 1154
AluI AGCT 6 cut(s) 158, 547, 751, 782, 824, 1154
Alw21I GWGCWC 1 cut(s) 549
Alw26I GTCTC 1 cut(s) 435
AlwI GGATC 3 cut(s) 851, 864, 1080
Ama87I CYCGRG 1 cut(s) 1006
AoxI GGCC 2 cut(s) 424, 953
ApaI GGGCCC 1 cut(s) 428
ApeKI GCWGC 6 cut(s) 62, 203, 441, 503, 824, 1154
ApoI RAATTY 4 cut(s) 664, 688, 948, 1011
ArsI GACNNNNNNTTYG 2 cut(s) 1022, 1054
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 2 cut(s) 424, 425
AsuC2I CCSGG 3 cut(s) 1007, 1008, 1090
AsuHPI GGTGA 1 cut(s) 995
AvaI CYCGRG 1 cut(s) 1006
BaeGI GKGCMC 1 cut(s) 428
BalI TGGCCA 1 cut(s) 955
BamHI GGATCC 1 cut(s) 856
BanII GRGCYC 3 cut(s) 428, 549, 874
BbsI GAAGAC 1 cut(s) 113
Bbv12I GWGCWC 1 cut(s) 549
BbvI GCAGC 6 cut(s) 49, 190, 453, 490, 811, 1141
BccI CCATC 6 cut(s) 114, 458, 704, 747, 753, 970
BceAI ACGGC 1 cut(s) 1241
BciT130I CCWGG 4 cut(s) 228, 876, 897, 980
BciVI GTATCC 3 cut(s) 212, 306, 807
BcnI CCSGG 3 cut(s) 1007, 1008, 1090
BcoDI GTCTC 1 cut(s) 435
BfaI CTAG 2 cut(s) 155, 1127
BfmI CTRYAG 2 cut(s) 351, 825
BfoI RGCGCY 1 cut(s) 297
BfuI GTATCC 3 cut(s) 212, 306, 807
BglI GCCNNNNNGGC 1 cut(s) 232
BglII AGATCT 1 cut(s) 1141
BisI GCNGC 7 cut(s) 63, 204, 442, 504, 825, 848, 1155
BlsI GCNGC 7 cut(s) 64, 205, 443, 505, 826, 849, 1156
Bme1390I CCNGG 7 cut(s) 228, 876, 897, 980, 1007, 1008, 1090
BmeT110I CYCGRG 1 cut(s) 1006
BmgT120I GGNCC 2 cut(s) 424, 425
BmiI GGNNCC 9 cut(s) 400, 425, 426, 476, 490, 858, 873, 937, 1208
BmrFI CCNGG 7 cut(s) 228, 876, 897, 980, 1007, 1008, 1090
BmrI ACTGGG 1 cut(s) 1054
BmsI GCATC 7 cut(s) 48, 260, 393, 490, 724, 1126, 1139
BmuI ACTGGG 1 cut(s) 1054
BpiI GAAGAC 1 cut(s) 113
BpmI CTGGAG 4 cut(s) 507, 609, 795, 858
BpuMI CCSGG 3 cut(s) 1007, 1008, 1090
BsaAI YACGTR 1 cut(s) 1150
BsaBI GATNNNNATC 2 cut(s) 738, 1140
BsaJI CCNNGG 3 cut(s) 832, 979, 1006
BsaXI ACNNNNNCTCC 2 cut(s) 768, 798
Bsc4I CCNNNNNNNGG 4 cut(s) 82, 421, 485, 810
Bse118I RCCGGY 1 cut(s) 491
Bse1I ACTGG 2 cut(s) 490, 1049
Bse3DI GCAATG 1 cut(s) 1074
Bse8I GATNNNNATC 2 cut(s) 738, 1140
BseBI CCWGG 4 cut(s) 228, 876, 897, 980
BseDI CCNNGG 3 cut(s) 832, 979, 1006
BseGI GGATG 5 cut(s) 125, 564, 739, 764, 975
BseJI GATNNNNATC 2 cut(s) 738, 1140
BseLI CCNNNNNNNGG 4 cut(s) 82, 421, 485, 810
BseMI GCAATG 1 cut(s) 1074
BseMII CTCAG 2 cut(s) 212, 259
BseNI ACTGG 2 cut(s) 490, 1049
BseRI GAGGAG 1 cut(s) 792
BseSI GKGCMC 1 cut(s) 428
BseXI GCAGC 6 cut(s) 49, 190, 453, 490, 811, 1141
Bsh1236I CGCG 1 cut(s) 847
BshFI GGCC 2 cut(s) 426, 955
BsiHKAI GWGCWC 1 cut(s) 549
BsiHKCI CYCGRG 1 cut(s) 1006
BsiSI CCGG 3 cut(s) 492, 1007, 1090
BslI CCNNNNNNNGG 4 cut(s) 82, 421, 485, 810
BsmAI GTCTC 1 cut(s) 435
BsmBI CGTCTC 1 cut(s) 435
BsnI GGCC 2 cut(s) 426, 955
BsoBI CYCGRG 1 cut(s) 1006
Bsp120I GGGCCC 1 cut(s) 424
Bsp1286I GDGCHC 3 cut(s) 428, 549, 874
Bsp143I GATC 5 cut(s) 241, 856, 1062, 1085, 1141
BspACI CCGC 2 cut(s) 755, 847
BspANI GGCC 2 cut(s) 426, 955
BspCNI CTCAG 2 cut(s) 211, 258
BspFNI CGCG 1 cut(s) 847
BspHI TCATGA 1 cut(s) 925
BspLI GGNNCC 9 cut(s) 400, 425, 426, 476, 490, 858, 873, 937, 1208
BspMAI CTGCAG 2 cut(s) 355, 829
BspPI GGATC 3 cut(s) 851, 864, 1080
BsrDI GCAATG 1 cut(s) 1074
BsrFI RCCGGY 1 cut(s) 491
BsrI ACTGG 2 cut(s) 490, 1049
BssAI RCCGGY 1 cut(s) 491
BssECI CCNNGG 3 cut(s) 832, 979, 1006
BssMI GATC 5 cut(s) 241, 856, 1062, 1085, 1141
BssT1I CCWWGG 1 cut(s) 832
Bst2UI CCWGG 4 cut(s) 228, 876, 897, 980
Bst4CI ACNGT 2 cut(s) 843, 1112
Bst6I CTCTTC 1 cut(s) 26
BstAPI GCANNNNNTGC 1 cut(s) 1136
BstBAI YACGTR 1 cut(s) 1150
BstC8I GCNNGC 2 cut(s) 493, 753
BstDEI CTNAG 2 cut(s) 198, 245
BstENI CCTNNNNNAGG 1 cut(s) 80
BstF5I GGATG 5 cut(s) 125, 564, 739, 764, 975
BstFNI CGCG 1 cut(s) 847
BstH2I RGCGCY 1 cut(s) 297
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 5 cut(s) 244, 859, 1065, 1088, 1144
BstMAI GTCTC 1 cut(s) 435
BstMBI GATC 5 cut(s) 241, 856, 1062, 1085, 1141
BstMWI GCNNNNNNNGC 4 cut(s) 232, 779, 788, 1136
BstNI CCWGG 4 cut(s) 228, 876, 897, 980
BstNSI RCATGY 1 cut(s) 179
BstSCI CCNGG 7 cut(s) 226, 874, 895, 978, 1005, 1006, 1088
BstSFI CTRYAG 2 cut(s) 351, 825
BstSLI GKGCMC 1 cut(s) 428
BstSNI TACGTA 1 cut(s) 1150
BstUI CGCG 1 cut(s) 847
BstV1I GCAGC 6 cut(s) 49, 190, 453, 490, 811, 1141
BstV2I GAAGAC 1 cut(s) 113
BstX2I RGATCY 3 cut(s) 856, 1085, 1141
BstXI CCANNNNNNTGG 1 cut(s) 308
BstYI RGATCY 3 cut(s) 856, 1085, 1141
BsuI GTATCC 3 cut(s) 212, 306, 807
BsuRI GGCC 2 cut(s) 426, 955
BtsCI GGATG 5 cut(s) 125, 564, 739, 764, 975
BtsIMutI CAGTG 4 cut(s) 253, 483, 595, 1117
Cac8I GCNNGC 2 cut(s) 493, 753
CciI TCATGA 1 cut(s) 925
CfoI GCGC 1 cut(s) 296
Cfr10I RCCGGY 1 cut(s) 491
Cfr13I GGNCC 2 cut(s) 424, 425
Cfr9I CCCGGG 1 cut(s) 1006
Csp6I GTAC 5 cut(s) 124, 146, 724, 1195, 1214
CviAII CATG 4 cut(s) 102, 176, 926, 1275
CviQI GTAC 5 cut(s) 124, 146, 724, 1195, 1214
DdeI CTNAG 2 cut(s) 198, 245
DpnI GATC 5 cut(s) 243, 858, 1064, 1087, 1143
DpnII GATC 5 cut(s) 241, 856, 1062, 1085, 1141
EaeI YGGCCR 1 cut(s) 953
Eam1104I CTCTTC 1 cut(s) 26
EarI CTCTTC 1 cut(s) 26
Ecl136II GAGCTC 1 cut(s) 547
Eco105I TACGTA 1 cut(s) 1150
Eco130I CCWWGG 1 cut(s) 832
Eco24I GRGCYC 3 cut(s) 428, 549, 874
Eco53kI GAGCTC 1 cut(s) 547
Eco57I CTGAAG 3 cut(s) 234, 299, 872
Eco88I CYCGRG 1 cut(s) 1006
EcoICRI GAGCTC 1 cut(s) 547
EcoNI CCTNNNNNAGG 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 424
EcoRI GAATTC 2 cut(s) 688, 1011
EcoRII CCWGG 4 cut(s) 226, 874, 895, 978
EcoT14I CCWWGG 1 cut(s) 832
EcoT38I GRGCYC 3 cut(s) 428, 549, 874
ErhI CCWWGG 1 cut(s) 832
Esp3I CGTCTC 1 cut(s) 435
FaeI CATG 4 cut(s) 105, 179, 929, 1278
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FatI CATG 4 cut(s) 101, 175, 925, 1274
FauI CCCGC 1 cut(s) 748
Fnu4HI GCNGC 7 cut(s) 63, 204, 442, 504, 825, 848, 1155
FokI GGATG 5 cut(s) 132, 571, 746, 771, 962
FriOI GRGCYC 3 cut(s) 428, 549, 874
Fsp4HI GCNGC 7 cut(s) 63, 204, 442, 504, 825, 848, 1155
FspBI CTAG 2 cut(s) 155, 1127
GlaI GCGC 1 cut(s) 295
GluI GCNGC 7 cut(s) 63, 204, 442, 504, 825, 848, 1155
GsuI CTGGAG 4 cut(s) 507, 609, 795, 858
HaeII RGCGCY 1 cut(s) 297
HaeIII GGCC 2 cut(s) 426, 955
HapII CCGG 3 cut(s) 492, 1007, 1090
HhaI GCGC 1 cut(s) 296
Hin1II CATG 4 cut(s) 105, 179, 929, 1278
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HinfI GANTC 3 cut(s) 98, 534, 1098
HpaII CCGG 3 cut(s) 492, 1007, 1090
HphI GGTGA 1 cut(s) 995
Hpy188I TCNGA 7 cut(s) 214, 463, 553, 861, 967, 1085, 1135
Hpy188III TCNNGA 8 cut(s) 165, 509, 538, 626, 731, 746, 926, 1242
Hpy99I CGWCG 2 cut(s) 449, 1202
HpyAV CCTTC 8 cut(s) 107, 204, 209, 225, 307, 386, 847, 861
HpyCH4III ACNGT 2 cut(s) 843, 1112
HpyCH4IV ACGT 2 cut(s) 1149, 1200
HpyCH4V TGCA 9 cut(s) 39, 251, 353, 384, 441, 827, 1079, 1139, 1235
HpyF10VI GCNNNNNNNGC 4 cut(s) 232, 779, 788, 1136
HpyF3I CTNAG 2 cut(s) 198, 245
HpySE526I ACGT 2 cut(s) 1149, 1200
Hsp92II CATG 4 cut(s) 105, 179, 929, 1278
HspAI GCGC 1 cut(s) 294
KroI GCCGGC 1 cut(s) 491
KroNI GCCGGC 1 cut(s) 493
Kzo9I GATC 5 cut(s) 241, 856, 1062, 1085, 1141
LmnI GCTCC 4 cut(s) 488, 511, 779, 877
Lsp1109I GCAGC 6 cut(s) 49, 190, 453, 490, 811, 1141
LweI GCATC 7 cut(s) 48, 260, 393, 490, 724, 1126, 1139
MaeI CTAG 2 cut(s) 155, 1127
MaeII ACGT 2 cut(s) 1149, 1200
MaeIII GTNAC 2 cut(s) 784, 907
MalI GATC 5 cut(s) 243, 858, 1064, 1087, 1143
MboI GATC 5 cut(s) 241, 856, 1062, 1085, 1141
MboII GAAGA 3 cut(s) 13, 118, 153
MfeI CAATTG 1 cut(s) 91
MflI RGATCY 3 cut(s) 856, 1085, 1141
MhlI GDGCHC 3 cut(s) 428, 549, 874
MlsI TGGCCA 1 cut(s) 955
MluNI TGGCCA 1 cut(s) 955
MlyI GAGTC 1 cut(s) 543
MmeI TCCRAC 1 cut(s) 1244
MnlI CCTC 8 cut(s) 110, 198, 365, 389, 760, 770, 1027, 1227
Mox20I TGGCCA 1 cut(s) 955
MroNI GCCGGC 1 cut(s) 491
MscI TGGCCA 1 cut(s) 955
MseI TTAA 2 cut(s) 11, 134
MslI CAYNNNNRTG 1 cut(s) 306
Msp20I TGGCCA 1 cut(s) 955
MspI CCGG 3 cut(s) 492, 1007, 1090
MspR9I CCNGG 7 cut(s) 228, 876, 897, 980, 1007, 1008, 1090
MunI CAATTG 1 cut(s) 91
MvaI CCWGG 4 cut(s) 228, 876, 897, 980
MvnI CGCG 1 cut(s) 847
MwoI GCNNNNNNNGC 4 cut(s) 232, 779, 788, 1136
NaeI GCCGGC 1 cut(s) 493
NciI CCSGG 3 cut(s) 1007, 1008, 1090
NdeII GATC 5 cut(s) 241, 856, 1062, 1085, 1141
NgoMIV GCCGGC 1 cut(s) 491
NlaIII CATG 4 cut(s) 105, 179, 929, 1278
NlaIV GGNNCC 9 cut(s) 400, 425, 426, 476, 490, 858, 873, 937, 1208
NspI RCATGY 1 cut(s) 179
OliI CACNNNNGTG 1 cut(s) 306
PagI TCATGA 1 cut(s) 925
PciI ACATGT 1 cut(s) 175
PdiI GCCGGC 1 cut(s) 493
PfeI GAWTC 2 cut(s) 98, 1098
PfoI TCCNGGA 2 cut(s) 874, 1088
PkrI GCNGC 7 cut(s) 64, 205, 443, 505, 826, 849, 1156
PleI GAGTC 1 cut(s) 542
PpsI GAGTC 1 cut(s) 542
Ppu21I YACGTR 1 cut(s) 1150
PscI ACATGT 1 cut(s) 175
PsiI TTATAA 1 cut(s) 338
Psp124BI GAGCTC 1 cut(s) 549
Psp6I CCWGG 4 cut(s) 226, 874, 895, 978
PspGI CCWGG 4 cut(s) 226, 874, 895, 978
PspN4I GGNNCC 9 cut(s) 400, 425, 426, 476, 490, 858, 873, 937, 1208
PspOMI GGGCCC 1 cut(s) 424
PspPI GGNCC 2 cut(s) 424, 425
PstI CTGCAG 2 cut(s) 355, 829
PsuI RGATCY 3 cut(s) 856, 1085, 1141
RsaI GTAC 5 cut(s) 125, 147, 725, 1196, 1215
RsaNI GTAC 5 cut(s) 124, 146, 724, 1195, 1214
RseI CAYNNNNRTG 1 cut(s) 306
SacI GAGCTC 1 cut(s) 549
SaqAI TTAA 2 cut(s) 11, 134
SatI GCNGC 7 cut(s) 63, 204, 442, 504, 825, 848, 1155
Sau3AI GATC 5 cut(s) 241, 856, 1062, 1085, 1141
Sau96I GGNCC 2 cut(s) 424, 425
SchI GAGTC 1 cut(s) 543
ScrFI CCNGG 7 cut(s) 228, 876, 897, 980, 1007, 1008, 1090
SduI GDGCHC 3 cut(s) 428, 549, 874
SfaNI GCATC 7 cut(s) 48, 260, 393, 490, 724, 1126, 1139
SfcI CTRYAG 2 cut(s) 351, 825
SmaI CCCGGG 1 cut(s) 1008
SmiMI CAYNNNNRTG 1 cut(s) 306
SnaBI TACGTA 1 cut(s) 1150
SsiI CCGC 2 cut(s) 755, 847
SspI AATATT 1 cut(s) 458
SspMI CTAG 2 cut(s) 155, 1127
SstI GAGCTC 1 cut(s) 549
StyD4I CCNGG 7 cut(s) 226, 874, 895, 978, 1005, 1006, 1088
StyI CCWWGG 1 cut(s) 832
TaaI ACNGT 2 cut(s) 843, 1112
TaiI ACGT 2 cut(s) 1152, 1203
TatI WGTACW 1 cut(s) 723
TauI GCSGC 1 cut(s) 850
TfiI GAWTC 2 cut(s) 98, 1098
Tru1I TTAA 2 cut(s) 11, 134
Tru9I TTAA 2 cut(s) 11, 134
TscAI CASTG 4 cut(s) 253, 490, 595, 1117
TseI GCWGC 6 cut(s) 62, 203, 441, 503, 824, 1154
TspDTI ATGAA 5 cut(s) 17, 198, 288, 575, 904
TspGWI ACGGA 3 cut(s) 125, 133, 1110
TspMI CCCGGG 1 cut(s) 1006
TspRI CASTG 4 cut(s) 253, 490, 595, 1117
XagI CCTNNNNNAGG 1 cut(s) 80
XapI RAATTY 4 cut(s) 664, 688, 948, 1011
XceI RCATGY 1 cut(s) 179
XmaI CCCGGG 1 cut(s) 1006
XspI CTAG 2 cut(s) 155, 1127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.