Rmu_sc0000820.1_g000005

Belongs to the glycosyl hydrolase 13 family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000820.1
Physical Location & Seq
Reverse (-)
18992 .. 22150
3159 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000820.1_g000005.1.cds

Sequence Viewer

Length: 1299 bp
atgcgatttctatgtgcggaatttctttggaaggaacgacttggacaaacccggggacttttatttgccaagtcaccgccagtgatttccagatgtccttattacaaggggttcaattgggaatcggcaaagaaggggggatggtacaacatcctgaaacagtctgcagctgaactagcttcttcaggaattacacatgtctggcttccaccaccttctcatgctatttcagatgaaggatacatgcctggcaggctgtatgatctcaatgtatctaaatatggaaatcaagatgatttaaaagcactgataaaagcctaccgtgacagtgggatacagagcatagcagatattgttataaaccacagatgtgcagagaagcaagatgagagaggaatatggtgcatttttgaaggaggaacacctgatgatcgccttgattgggggccgtctcttatttgcagtgatgacacacaatattctgatggcaagggcaatcctgacactggagctgactttgggggtgctcctgacattgatcacaaaaacacaagggtccagaatgagctctcggattggatgaattggttaaagacggaaattgggttcagtggatggcgatttgattttgtcaagggatatgctccagagttcaccaagttatatgtggcaaacacaaagcctagtttctcagtaggagagttttggaactcccttgcttatggaagtgatggtaaaccggagtacaaccaggacaaccatcgtaaagagcttgctggatggatagggaatgctggaggagaggttaccgcatttgattttacaactaaagggatacttcaagctgctgtccaaggtgaactggggaggttgaaggactcaaatggagggcctcctggattgattggaatatcgccacgcaatagtgtgactttcatagacaatcatgatacaggttccacacaaaagttgtggccatttccatcagataaagtcattcagggatatgcttacattcttactcatccagggatcccatcgatattctatgatcatttctttgactggggattgaaagaggagatctcgaaactcactgcgattaggtccaggaatgggatcaaacccgacagtgccgtgcatatcctagcagctgatgcagatctctatttagcttccatagatgataaaatcataaccaagattggtccaagatccgacgttgggaaccttgtacctccaacattcaaaattgcaacctctggaaatgattatagtgtttgggagaaaacagcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

432

Amino Acids

47.94

Weight (kDa)

5.66

Isoelectric Point (pI)

30.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 359
AciI CCGC 3 cut(s) 17, 77, 810
AclWI GGATC 4 cut(s) 1027, 1040, 1127, 1209
AcoI YGGCCR 1 cut(s) 974
AcsI RAATTY 1 cut(s) 20
AcuI CTGAAG 1 cut(s) 168
AfaI GTAC 3 cut(s) 146, 746, 1236
AfiI CCNNNNNNNGG 4 cut(s) 442, 506, 1116, 1224
AflIII ACRYGT 1 cut(s) 196
AgsI TTSAA 6 cut(s) 115, 413, 842, 874, 1075, 1249
AjnI CCWGG 5 cut(s) 247, 750, 895, 1027, 1109
AleI CACNNNNGTG 1 cut(s) 369
AloI GAACNNNNNNTCC 2 cut(s) 590, 622
AluBI AGCT 8 cut(s) 170, 179, 512, 568, 772, 845, 1154, 1175
AluI AGCT 8 cut(s) 170, 179, 512, 568, 772, 845, 1154, 1175
Alw21I GWGCWC 2 cut(s) 529, 570
Alw26I GTCTC 1 cut(s) 456
AlwI GGATC 4 cut(s) 1027, 1040, 1127, 1209
Ama87I CYCGRG 1 cut(s) 51
AoxI GGCC 3 cut(s) 446, 890, 974
ApeKI GCWGC 3 cut(s) 167, 845, 1151
ApoI RAATTY 1 cut(s) 20
AspS9I GGNCC 5 cut(s) 446, 556, 890, 1107, 1208
AsuC2I CCSGG 2 cut(s) 52, 53
AsuHPI GGTGA 3 cut(s) 66, 646, 869
AvaI CYCGRG 1 cut(s) 51
AvaII GGWCC 3 cut(s) 556, 1107, 1208
BalI TGGCCA 1 cut(s) 976
BamHI GGATCC 1 cut(s) 1032
BanII GRGCYC 1 cut(s) 570
Bbv12I GWGCWC 2 cut(s) 529, 570
BbvI GCAGC 3 cut(s) 179, 832, 1163
BccI CCATC 8 cut(s) 135, 479, 609, 725, 768, 774, 991, 1045
BceAI ACGGC 2 cut(s) 433, 1121
BciT130I CCWGG 5 cut(s) 249, 752, 897, 1029, 1111
BciVI GTATCC 3 cut(s) 233, 327, 828
BclI TGATCA 2 cut(s) 538, 1051
BcnI CCSGG 2 cut(s) 52, 53
BcoDI GTCTC 1 cut(s) 456
BfaI CTAG 3 cut(s) 176, 684, 1148
BfmI CTRYAG 1 cut(s) 165
BfuI GTATCC 3 cut(s) 233, 327, 828
BglI GCCNNNNNGGC 1 cut(s) 253
BglII AGATCT 2 cut(s) 1083, 1162
BisI GCNGC 3 cut(s) 168, 846, 1152
BlsI GCNGC 3 cut(s) 169, 847, 1153
Bme1390I CCNGG 7 cut(s) 52, 53, 249, 752, 897, 1029, 1111
Bme18I GGWCC 3 cut(s) 556, 1107, 1208
BmeT110I CYCGRG 1 cut(s) 51
BmgT120I GGNCC 5 cut(s) 446, 556, 890, 1107, 1208
BmiI GGNNCC 5 cut(s) 447, 557, 958, 1034, 1229
BmrFI CCNGG 7 cut(s) 52, 53, 249, 752, 897, 1029, 1111
BmrI ACTGGG 2 cut(s) 872, 1075
BmsI GCATC 1 cut(s) 1147
BmuI ACTGGG 2 cut(s) 872, 1075
BplI GAGNNNNNCTC 2 cut(s) 1070, 1102
BpmI CTGGAG 3 cut(s) 528, 630, 816
BpuMI CCSGG 2 cut(s) 52, 53
Bsa29I ATCGAT 1 cut(s) 1040
BsaBI GATNNNNATC 1 cut(s) 1161
BsaJI CCNNGG 4 cut(s) 51, 52, 853, 1028
BsaWI WCCGGW 1 cut(s) 739
BsaXI ACNNNNNCTCC 2 cut(s) 789, 819
Bsc4I CCNNNNNNNGG 4 cut(s) 442, 506, 1116, 1224
Bse1I ACTGG 4 cut(s) 80, 511, 867, 1070
Bse8I GATNNNNATC 1 cut(s) 1161
BseBI CCWGG 5 cut(s) 249, 752, 897, 1029, 1111
BseCI ATCGAT 1 cut(s) 1040
BseDI CCNNGG 4 cut(s) 51, 52, 853, 1028
BseGI GGATG 6 cut(s) 146, 150, 585, 620, 785, 1024
BseJI GATNNNNATC 1 cut(s) 1161
BseLI CCNNNNNNNGG 4 cut(s) 442, 506, 1116, 1224
BseMII CTCAG 1 cut(s) 705
BseNI ACTGG 4 cut(s) 80, 511, 867, 1070
BseRI GAGGAG 2 cut(s) 813, 1094
BseXI GCAGC 3 cut(s) 179, 832, 1163
BsgI GTGCAG 1 cut(s) 393
BshFI GGCC 3 cut(s) 448, 892, 976
BshVI ATCGAT 1 cut(s) 1040
BsiHKAI GWGCWC 2 cut(s) 529, 570
BsiHKCI CYCGRG 1 cut(s) 51
BsiSI CCGG 2 cut(s) 52, 740
BslFI GGGAC 1 cut(s) 69
BslI CCNNNNNNNGG 4 cut(s) 442, 506, 1116, 1224
BsmAI GTCTC 1 cut(s) 456
BsmBI CGTCTC 1 cut(s) 456
BsmFI GGGAC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 796
BsnI GGCC 3 cut(s) 448, 892, 976
BsoBI CYCGRG 1 cut(s) 51
Bsp1286I GDGCHC 2 cut(s) 529, 570
Bsp143I GATC 9 cut(s) 262, 430, 538, 1032, 1051, 1083, 1119, 1162, 1214
BspACI CCGC 3 cut(s) 17, 77, 810
BspANI GGCC 3 cut(s) 448, 892, 976
BspCNI CTCAG 1 cut(s) 704
BspDI ATCGAT 1 cut(s) 1040
BspHI TCATGA 1 cut(s) 946
BspLI GGNNCC 5 cut(s) 447, 557, 958, 1034, 1229
BspMAI CTGCAG 1 cut(s) 169
BspPI GGATC 4 cut(s) 1027, 1040, 1127, 1209
BsrI ACTGG 4 cut(s) 80, 511, 867, 1070
BssECI CCNNGG 4 cut(s) 51, 52, 853, 1028
BssMI GATC 9 cut(s) 262, 430, 538, 1032, 1051, 1083, 1119, 1162, 1214
BssT1I CCWWGG 1 cut(s) 853
Bst2UI CCWGG 5 cut(s) 249, 752, 897, 1029, 1111
Bst4CI ACNGT 4 cut(s) 162, 323, 329, 1133
BstAPI GCANNNNNTGC 1 cut(s) 1157
BstC8I GCNNGC 2 cut(s) 254, 774
BstDEI CTNAG 1 cut(s) 691
BstEII GGTNACC 1 cut(s) 805
BstF5I GGATG 6 cut(s) 146, 150, 585, 620, 785, 1024
BstKTI GATC 9 cut(s) 265, 433, 541, 1035, 1054, 1086, 1122, 1165, 1217
BstMAI GTCTC 1 cut(s) 456
BstMBI GATC 9 cut(s) 262, 430, 538, 1032, 1051, 1083, 1119, 1162, 1214
BstMWI GCNNNNNNNGC 3 cut(s) 176, 253, 1157
BstNI CCWGG 5 cut(s) 249, 752, 897, 1029, 1111
BstNSI RCATGY 2 cut(s) 200, 247
BstPI GGTNACC 1 cut(s) 805
BstSCI CCNGG 7 cut(s) 50, 51, 247, 750, 895, 1027, 1109
BstSFI CTRYAG 1 cut(s) 165
BstV1I GCAGC 3 cut(s) 179, 832, 1163
BstX2I RGATCY 4 cut(s) 1032, 1083, 1162, 1214
BstYI RGATCY 4 cut(s) 1032, 1083, 1162, 1214
Bsu15I ATCGAT 1 cut(s) 1040
BsuI GTATCC 3 cut(s) 233, 327, 828
BsuRI GGCC 3 cut(s) 448, 892, 976
BsuTUI ATCGAT 1 cut(s) 1040
BtsCI GGATG 6 cut(s) 146, 150, 585, 620, 785, 1024
BtsI GCAGTG 2 cut(s) 469, 1095
BtsIMutI CAGTG 8 cut(s) 87, 305, 334, 469, 504, 616, 1095, 1138
Cac8I GCNNGC 2 cut(s) 254, 774
CciI TCATGA 1 cut(s) 946
Cfr13I GGNCC 5 cut(s) 446, 556, 890, 1107, 1208
Cfr9I CCCGGG 1 cut(s) 51
ClaI ATCGAT 1 cut(s) 1040
Csp6I GTAC 3 cut(s) 145, 745, 1235
CspCI CAANNNNNGTGG 2 cut(s) 953, 988
CviAII CATG 5 cut(s) 197, 221, 244, 947, 1296
CviQI GTAC 3 cut(s) 145, 745, 1235
DdeI CTNAG 1 cut(s) 691
DpnI GATC 9 cut(s) 264, 432, 540, 1034, 1053, 1085, 1121, 1164, 1216
DpnII GATC 9 cut(s) 262, 430, 538, 1032, 1051, 1083, 1119, 1162, 1214
DraI TTTAAA 1 cut(s) 300
EaeI YGGCCR 1 cut(s) 974
Ecl136II GAGCTC 1 cut(s) 568
Eco130I CCWWGG 1 cut(s) 853
Eco24I GRGCYC 1 cut(s) 570
Eco47I GGWCC 3 cut(s) 556, 1107, 1208
Eco53kI GAGCTC 1 cut(s) 568
Eco57I CTGAAG 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 51
Eco91I GGTNACC 1 cut(s) 805
EcoICRI GAGCTC 1 cut(s) 568
EcoO109I RGGNCCY 1 cut(s) 890
EcoO65I GGTNACC 1 cut(s) 805
EcoRII CCWGG 5 cut(s) 247, 750, 895, 1027, 1109
EcoT14I CCWWGG 1 cut(s) 853
EcoT38I GRGCYC 1 cut(s) 570
ErhI CCWWGG 1 cut(s) 853
Esp3I CGTCTC 1 cut(s) 456
FaeI CATG 5 cut(s) 200, 224, 247, 950, 1299
FalI AAGNNNNNCTT 2 cut(s) 822, 854
FaqI GGGAC 1 cut(s) 69
FatI CATG 5 cut(s) 196, 220, 243, 946, 1295
FbaI TGATCA 2 cut(s) 538, 1051
Fnu4HI GCNGC 3 cut(s) 168, 846, 1152
FokI GGATG 6 cut(s) 137, 153, 592, 627, 792, 1011
FriOI GRGCYC 1 cut(s) 570
Fsp4HI GCNGC 3 cut(s) 168, 846, 1152
FspBI CTAG 3 cut(s) 176, 684, 1148
GluI GCNGC 3 cut(s) 168, 846, 1152
GsuI CTGGAG 3 cut(s) 528, 630, 816
HaeIII GGCC 3 cut(s) 448, 892, 976
HapII CCGG 2 cut(s) 52, 740
Hin1II CATG 5 cut(s) 200, 224, 247, 950, 1299
HinfI GANTC 2 cut(s) 122, 878
HpaII CCGG 2 cut(s) 52, 740
HphI GGTGA 3 cut(s) 66, 646, 869
Hpy166II GTNNAC 3 cut(s) 654, 737, 860
Hpy188I TCNGA 5 cut(s) 232, 484, 574, 988, 1219
Hpy8I GTNNAC 3 cut(s) 654, 737, 860
Hpy99I CGWCG 1 cut(s) 1223
HpyAV CCTTC 6 cut(s) 25, 127, 225, 230, 407, 868
HpyCH4III ACNGT 4 cut(s) 162, 323, 329, 1133
HpyCH4IV ACGT 1 cut(s) 1221
HpyCH4V TGCA 7 cut(s) 167, 374, 405, 462, 1141, 1160, 1256
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 253, 1157
HpyF3I CTNAG 1 cut(s) 691
HpySE526I ACGT 1 cut(s) 1221
Hsp92II CATG 5 cut(s) 200, 224, 247, 950, 1299
Ksp22I TGATCA 2 cut(s) 538, 1051
Kzo9I GATC 9 cut(s) 262, 430, 538, 1032, 1051, 1083, 1119, 1162, 1214
LmnI GCTCC 3 cut(s) 509, 532, 649
Lsp1109I GCAGC 3 cut(s) 179, 832, 1163
LweI GCATC 1 cut(s) 1147
MaeI CTAG 3 cut(s) 176, 684, 1148
MaeII ACGT 1 cut(s) 1221
MaeIII GTNAC 4 cut(s) 72, 323, 805, 928
MalI GATC 9 cut(s) 264, 432, 540, 1034, 1053, 1085, 1121, 1164, 1216
MboI GATC 9 cut(s) 262, 430, 538, 1032, 1051, 1083, 1119, 1162, 1214
MboII GAAGA 1 cut(s) 174
MfeI CAATTG 1 cut(s) 115
MflI RGATCY 4 cut(s) 1032, 1083, 1162, 1214
MhlI GDGCHC 2 cut(s) 529, 570
MlsI TGGCCA 1 cut(s) 976
MluCI AATT 6 cut(s) 20, 115, 189, 583, 600, 1251
MluNI TGGCCA 1 cut(s) 976
MlyI GAGTC 1 cut(s) 872
MmeI TCCRAC 2 cut(s) 1242, 1265
Mox20I TGGCCA 1 cut(s) 976
MscI TGGCCA 1 cut(s) 976
MseI TTAA 2 cut(s) 299, 590
MslI CAYNNNNRTG 1 cut(s) 369
Msp20I TGGCCA 1 cut(s) 976
MspA1I CMGCKG 2 cut(s) 170, 1154
MspI CCGG 2 cut(s) 52, 740
MspR9I CCNGG 7 cut(s) 52, 53, 249, 752, 897, 1029, 1111
MunI CAATTG 1 cut(s) 115
Mva1269I GAATGC 1 cut(s) 796
MvaI CCWGG 5 cut(s) 249, 752, 897, 1029, 1111
MwoI GCNNNNNNNGC 3 cut(s) 176, 253, 1157
NciI CCSGG 2 cut(s) 52, 53
NdeII GATC 9 cut(s) 262, 430, 538, 1032, 1051, 1083, 1119, 1162, 1214
NlaIII CATG 5 cut(s) 200, 224, 247, 950, 1299
NlaIV GGNNCC 5 cut(s) 447, 557, 958, 1034, 1229
NmuCI GTSAC 3 cut(s) 72, 323, 928
NspI RCATGY 2 cut(s) 200, 247
OliI CACNNNNGTG 1 cut(s) 369
PagI TCATGA 1 cut(s) 946
PciI ACATGT 1 cut(s) 196
PctI GAATGC 1 cut(s) 796
PfeI GAWTC 1 cut(s) 122
PfoI TCCNGGA 2 cut(s) 895, 1109
PkrI GCNGC 3 cut(s) 169, 847, 1153
PleI GAGTC 1 cut(s) 872
PpsI GAGTC 1 cut(s) 872
PscI ACATGT 1 cut(s) 196
PsiI TTATAA 1 cut(s) 359
Psp124BI GAGCTC 1 cut(s) 570
Psp6I CCWGG 5 cut(s) 247, 750, 895, 1027, 1109
PspEI GGTNACC 1 cut(s) 805
PspGI CCWGG 5 cut(s) 247, 750, 895, 1027, 1109
PspN4I GGNNCC 5 cut(s) 447, 557, 958, 1034, 1229
PspPI GGNCC 5 cut(s) 446, 556, 890, 1107, 1208
PstI CTGCAG 1 cut(s) 169
PsuI RGATCY 4 cut(s) 1032, 1083, 1162, 1214
PvuII CAGCTG 2 cut(s) 170, 1154
RsaI GTAC 3 cut(s) 146, 746, 1236
RsaNI GTAC 3 cut(s) 145, 745, 1235
RseI CAYNNNNRTG 1 cut(s) 369
SacI GAGCTC 1 cut(s) 570
SaqAI TTAA 2 cut(s) 299, 590
SatI GCNGC 3 cut(s) 168, 846, 1152
Sau3AI GATC 9 cut(s) 262, 430, 538, 1032, 1051, 1083, 1119, 1162, 1214
Sau96I GGNCC 5 cut(s) 446, 556, 890, 1107, 1208
SchI GAGTC 1 cut(s) 872
ScrFI CCNGG 7 cut(s) 52, 53, 249, 752, 897, 1029, 1111
SduI GDGCHC 2 cut(s) 529, 570
SfaNI GCATC 1 cut(s) 1147
SfcI CTRYAG 1 cut(s) 165
SinI GGWCC 3 cut(s) 556, 1107, 1208
SmaI CCCGGG 1 cut(s) 53
SmiMI CAYNNNNRTG 1 cut(s) 369
Sse9I AATT 6 cut(s) 20, 115, 189, 583, 600, 1251
SsiI CCGC 3 cut(s) 17, 77, 810
SspI AATATT 1 cut(s) 479
SspMI CTAG 3 cut(s) 176, 684, 1148
SstI GAGCTC 1 cut(s) 570
StyD4I CCNGG 7 cut(s) 50, 51, 247, 750, 895, 1027, 1109
StyI CCWWGG 1 cut(s) 853
TaaI ACNGT 4 cut(s) 162, 323, 329, 1133
TaiI ACGT 1 cut(s) 1224
TaqI TCGA 2 cut(s) 1040, 1088
TasI AATT 6 cut(s) 20, 115, 189, 583, 600, 1251
TatI WGTACW 1 cut(s) 744
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 2 cut(s) 299, 590
Tru9I TTAA 2 cut(s) 299, 590
TscAI CASTG 8 cut(s) 87, 312, 334, 469, 511, 616, 1102, 1138
TseFI GTSAC 3 cut(s) 72, 323, 928
TseI GCWGC 3 cut(s) 167, 845, 1151
Tsp45I GTSAC 3 cut(s) 72, 323, 928
TspDTI ATGAA 3 cut(s) 249, 596, 925
TspGWI ACGGA 1 cut(s) 611
TspMI CCCGGG 1 cut(s) 51
TspRI CASTG 8 cut(s) 87, 312, 334, 469, 511, 616, 1102, 1138
VpaK11BI GGWCC 3 cut(s) 556, 1107, 1208
XapI RAATTY 1 cut(s) 20
XceI RCATGY 2 cut(s) 200, 247
XcmI CCANNNNNNNNNTGG 1 cut(s) 664
XmaI CCCGGG 1 cut(s) 51
XspI CTAG 3 cut(s) 176, 684, 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.