RLG00000014687

Belongs to the glycosyl hydrolase 13 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
56301595 .. 56303958
2364 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014687

Sequence Viewer

Length: 1278 bp
ATGAATTCACTAAAAATTTCCCTCCTCTGTTTCCTACTCTCTATCATTTTCATACCCAACTTCACTGCTTCCCAAATCCTATTTCAGGGGTTCAATTGGGAATCGGCAAGGAAGGGAGGATGGTACAACATCCTGAAGCAGTCTGCAGCTGAACTAGCTTCTTCAGGAATTACACATGTTTGGCTTCCACCACCTTCTCATGCTATTTCAGATGAAGGATACATGCCTGGCAGGCTGTATGATCTCAATGTATCTAAATATGGAAATCAAAATGATTTAAAAGCACTGACAAAAGCCTACCGTGACAACGGGATACAAAGCATAGCAGATATTGTTATAAACCACAGATGTGCAGAGAAGCAAGATGAGAGAGGAATATGGTGCATTTTTGAAGGAGGAACACCTGATGATCGCCTTGATTGGGGGCCGTCTCTTATTTGCAGTGATGACACACAATATTCTGATGGCAAGGGCAACCCTGACACTGGAGCTGACTTTGGGGGTGCTCCTGACATTGATCACAAAAACACGAGGGTCCAGAATGAGCTCTCGGATTGGATGAATTGGTTAAAGACCGAAATTGGGTTCAGCGGATGGCGATTTGATTTTGTCAAGGGATATGCTCCAGAGTTCACCAAGTTATATGTGGCAAACACAAAGCCTAGTTTCTCAGTAGGAGAGTTTTGGAACTCCCTTGCTTATGGAAGTGATGGTAAACCGGAGTACAACCAGGACAACCATCGTAAAGAGCTCGCTGGATGGATAGGGAATGCTGGAGGAGAGGTTACCGCATTTGATTTTACAACTAAAGGGATACTTCAAGCTGCTGTCCAAGGTGAACTGGGGAGGTTGAAGGACTCAAATGGAGGGCCTCCTGGATTGATTGGAATATCGCCACGCAATAGTGTGACTTTCATAGACAATCATGATACAGGTTCCACACAAAAGTTGTGGCCATTTCCATCAGATAAAGTCATTCAGGGATATGCGTACATTCTTACTCATCCAGGGATCCCATCGATATTCTATGATCATTTCTTTGACTGGGGATTGAAAGAGGAGATCTCGAAACTCACTGCGATTAGGTCCAGGAATGGGATCAAACCTGACAGTGCCGTGAAAATCCTAGCAGCTGATGCTGATCTCTATTTAGCTTCCATAGATGATAAAATCATAACCAAGATTGGTCCAAGATCCGACGTTGGGAACCTTGTACCTCCAACATTCAAAATTGCAACCTCTGGAAATGATTATAGTGTTTGGGAGAAAACAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

426

Amino Acids

46.98

Weight (kDa)

5.35

Isoelectric Point (pI)

25.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alpha-amylase PF00128 55 - 120 2.6e-06 Alpha amylase, catalytic domain
Alpha-amyl_C2 PF07821 364 - 422 1.5e-21 Alpha-amylase C-terminal beta-sheet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
AciI CCGC 2 cut(s) 591, 789
AclWI GGATC 4 cut(s) 1006, 1019, 1106, 1188
AcoI YGGCCR 1 cut(s) 953
AcsI RAATTY 2 cut(s) 4, 15
AcuI CTGAAG 2 cut(s) 147, 155
AfaI GTAC 4 cut(s) 125, 725, 992, 1215
AfiI CCNNNNNNNGG 6 cut(s) 85, 421, 485, 582, 1095, 1203
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 6 cut(s) 94, 392, 821, 853, 1054, 1228
AjnI CCWGG 5 cut(s) 226, 729, 874, 1006, 1088
AjuI GAANNNNNNNTTGG 2 cut(s) 66, 98
AleI CACNNNNGTG 1 cut(s) 348
AluBI AGCT 8 cut(s) 149, 158, 491, 547, 751, 824, 1133, 1154
AluI AGCT 8 cut(s) 149, 158, 491, 547, 751, 824, 1133, 1154
Alw21I GWGCWC 3 cut(s) 508, 549, 753
Alw26I GTCTC 1 cut(s) 435
AlwI GGATC 4 cut(s) 1006, 1019, 1106, 1188
AoxI GGCC 3 cut(s) 425, 869, 953
ApeKI GCWGC 3 cut(s) 146, 824, 1130
ApoI RAATTY 2 cut(s) 4, 15
AspS9I GGNCC 5 cut(s) 425, 535, 869, 1086, 1187
AsuHPI GGTGA 2 cut(s) 625, 848
AvaII GGWCC 3 cut(s) 535, 1086, 1187
BalI TGGCCA 1 cut(s) 955
BamHI GGATCC 1 cut(s) 1011
BanII GRGCYC 2 cut(s) 549, 753
BauI CACGAG 1 cut(s) 529
Bbv12I GWGCWC 3 cut(s) 508, 549, 753
BbvI GCAGC 3 cut(s) 158, 811, 1142
BccI CCATC 8 cut(s) 114, 458, 588, 704, 747, 753, 970, 1024
BceAI ACGGC 2 cut(s) 412, 1100
BciT130I CCWGG 5 cut(s) 228, 731, 876, 1008, 1090
BciVI GTATCC 3 cut(s) 212, 306, 807
BclI TGATCA 2 cut(s) 517, 1030
BcoDI GTCTC 1 cut(s) 435
BfaI CTAG 3 cut(s) 155, 663, 1127
BfmI CTRYAG 1 cut(s) 144
BfuI GTATCC 3 cut(s) 212, 306, 807
BglI GCCNNNNNGGC 1 cut(s) 232
BglII AGATCT 1 cut(s) 1062
BisI GCNGC 3 cut(s) 147, 825, 1131
BlsI GCNGC 3 cut(s) 148, 826, 1132
Bme1390I CCNGG 5 cut(s) 228, 731, 876, 1008, 1090
Bme18I GGWCC 3 cut(s) 535, 1086, 1187
BmgT120I GGNCC 5 cut(s) 425, 535, 869, 1086, 1187
BmiI GGNNCC 5 cut(s) 426, 536, 937, 1013, 1208
BmrFI CCNGG 5 cut(s) 228, 731, 876, 1008, 1090
BmrI ACTGGG 2 cut(s) 851, 1054
BmsI GCATC 1 cut(s) 1126
BmuI ACTGGG 2 cut(s) 851, 1054
BplI GAGNNNNNCTC 2 cut(s) 1049, 1081
BpmI CTGGAG 3 cut(s) 507, 609, 795
Bsa29I ATCGAT 1 cut(s) 1019
BsaBI GATNNNNATC 1 cut(s) 1140
BsaJI CCNNGG 2 cut(s) 832, 1007
BsaWI WCCGGW 1 cut(s) 718
BsaXI ACNNNNNCTCC 2 cut(s) 768, 798
Bsc4I CCNNNNNNNGG 6 cut(s) 85, 421, 485, 582, 1095, 1203
Bse1I ACTGG 3 cut(s) 490, 846, 1049
Bse8I GATNNNNATC 1 cut(s) 1140
BseBI CCWGG 5 cut(s) 228, 731, 876, 1008, 1090
BseCI ATCGAT 1 cut(s) 1019
BseDI CCNNGG 2 cut(s) 832, 1007
BseGI GGATG 6 cut(s) 125, 129, 564, 599, 764, 1003
BseJI GATNNNNATC 1 cut(s) 1140
BseLI CCNNNNNNNGG 6 cut(s) 85, 421, 485, 582, 1095, 1203
BseMII CTCAG 1 cut(s) 684
BseNI ACTGG 3 cut(s) 490, 846, 1049
BseRI GAGGAG 3 cut(s) 14, 792, 1073
BseXI GCAGC 3 cut(s) 158, 811, 1142
BsgI GTGCAG 1 cut(s) 372
BshFI GGCC 3 cut(s) 427, 871, 955
BshVI ATCGAT 1 cut(s) 1019
BsiHKAI GWGCWC 3 cut(s) 508, 549, 753
BsiSI CCGG 1 cut(s) 719
BslI CCNNNNNNNGG 6 cut(s) 85, 421, 485, 582, 1095, 1203
BsmAI GTCTC 1 cut(s) 435
BsmBI CGTCTC 1 cut(s) 435
BsmI GAATGC 1 cut(s) 775
BsnI GGCC 3 cut(s) 427, 871, 955
Bsp1286I GDGCHC 3 cut(s) 508, 549, 753
Bsp143I GATC 9 cut(s) 241, 409, 517, 1011, 1030, 1062, 1098, 1141, 1193
BspACI CCGC 2 cut(s) 591, 789
BspANI GGCC 3 cut(s) 427, 871, 955
BspCNI CTCAG 1 cut(s) 683
BspDI ATCGAT 1 cut(s) 1019
BspHI TCATGA 1 cut(s) 925
BspLI GGNNCC 5 cut(s) 426, 536, 937, 1013, 1208
BspMAI CTGCAG 1 cut(s) 148
BspPI GGATC 4 cut(s) 1006, 1019, 1106, 1188
BsrI ACTGG 3 cut(s) 490, 846, 1049
BssECI CCNNGG 2 cut(s) 832, 1007
BssMI GATC 9 cut(s) 241, 409, 517, 1011, 1030, 1062, 1098, 1141, 1193
BssSI CACGAG 1 cut(s) 529
BssT1I CCWWGG 1 cut(s) 832
Bst2BI CACGAG 1 cut(s) 529
Bst2UI CCWGG 5 cut(s) 228, 731, 876, 1008, 1090
Bst4CI ACNGT 2 cut(s) 302, 1112
BstAPI GCANNNNNTGC 1 cut(s) 1136
BstC8I GCNNGC 2 cut(s) 233, 753
BstDEI CTNAG 1 cut(s) 670
BstEII GGTNACC 1 cut(s) 784
BstENI CCTNNNNNAGG 1 cut(s) 83
BstF5I GGATG 6 cut(s) 125, 129, 564, 599, 764, 1003
BstKTI GATC 9 cut(s) 244, 412, 520, 1014, 1033, 1065, 1101, 1144, 1196
BstMAI GTCTC 1 cut(s) 435
BstMBI GATC 9 cut(s) 241, 409, 517, 1011, 1030, 1062, 1098, 1141, 1193
BstMWI GCNNNNNNNGC 3 cut(s) 155, 232, 1136
BstNI CCWGG 5 cut(s) 228, 731, 876, 1008, 1090
BstNSI RCATGY 2 cut(s) 179, 226
BstPI GGTNACC 1 cut(s) 784
BstSCI CCNGG 5 cut(s) 226, 729, 874, 1006, 1088
BstSFI CTRYAG 1 cut(s) 144
BstV1I GCAGC 3 cut(s) 158, 811, 1142
BstX2I RGATCY 3 cut(s) 1011, 1062, 1193
BstYI RGATCY 3 cut(s) 1011, 1062, 1193
Bsu15I ATCGAT 1 cut(s) 1019
BsuI GTATCC 3 cut(s) 212, 306, 807
BsuRI GGCC 3 cut(s) 427, 871, 955
BsuTUI ATCGAT 1 cut(s) 1019
BtsCI GGATG 6 cut(s) 125, 129, 564, 599, 764, 1003
BtsI GCAGTG 3 cut(s) 63, 448, 1074
BtsIMutI CAGTG 6 cut(s) 63, 284, 448, 483, 1074, 1117
Cac8I GCNNGC 2 cut(s) 233, 753
CciI TCATGA 1 cut(s) 925
Cfr13I GGNCC 5 cut(s) 425, 535, 869, 1086, 1187
ClaI ATCGAT 1 cut(s) 1019
Csp6I GTAC 4 cut(s) 124, 724, 991, 1214
CspCI CAANNNNNGTGG 2 cut(s) 932, 967
CviAII CATG 5 cut(s) 176, 200, 223, 926, 1275
CviQI GTAC 4 cut(s) 124, 724, 991, 1214
DdeI CTNAG 1 cut(s) 670
DpnI GATC 9 cut(s) 243, 411, 519, 1013, 1032, 1064, 1100, 1143, 1195
DpnII GATC 9 cut(s) 241, 409, 517, 1011, 1030, 1062, 1098, 1141, 1193
DraI TTTAAA 1 cut(s) 279
EaeI YGGCCR 1 cut(s) 953
Ecl136II GAGCTC 2 cut(s) 547, 751
Eco130I CCWWGG 1 cut(s) 832
Eco24I GRGCYC 2 cut(s) 549, 753
Eco47I GGWCC 3 cut(s) 535, 1086, 1187
Eco53kI GAGCTC 2 cut(s) 547, 751
Eco57I CTGAAG 2 cut(s) 147, 155
Eco91I GGTNACC 1 cut(s) 784
EcoICRI GAGCTC 2 cut(s) 547, 751
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 869
EcoO65I GGTNACC 1 cut(s) 784
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 5 cut(s) 226, 729, 874, 1006, 1088
EcoT14I CCWWGG 1 cut(s) 832
EcoT38I GRGCYC 2 cut(s) 549, 753
ErhI CCWWGG 1 cut(s) 832
Esp3I CGTCTC 1 cut(s) 435
FaeI CATG 5 cut(s) 179, 203, 226, 929, 1278
FalI AAGNNNNNCTT 2 cut(s) 801, 833
FatI CATG 5 cut(s) 175, 199, 222, 925, 1274
FbaI TGATCA 2 cut(s) 517, 1030
Fnu4HI GCNGC 3 cut(s) 147, 825, 1131
FokI GGATG 6 cut(s) 116, 132, 571, 606, 771, 990
FriOI GRGCYC 2 cut(s) 549, 753
Fsp4HI GCNGC 3 cut(s) 147, 825, 1131
FspBI CTAG 3 cut(s) 155, 663, 1127
GluI GCNGC 3 cut(s) 147, 825, 1131
GsuI CTGGAG 3 cut(s) 507, 609, 795
HaeIII GGCC 3 cut(s) 427, 871, 955
HapII CCGG 1 cut(s) 719
Hin1II CATG 5 cut(s) 179, 203, 226, 929, 1278
HinfI GANTC 2 cut(s) 101, 857
HpaII CCGG 1 cut(s) 719
HphI GGTGA 2 cut(s) 625, 848
Hpy166II GTNNAC 3 cut(s) 633, 716, 839
Hpy188I TCNGA 5 cut(s) 211, 463, 553, 967, 1198
Hpy188III TCNNGA 8 cut(s) 133, 165, 509, 538, 626, 926, 1066, 1242
Hpy8I GTNNAC 3 cut(s) 633, 716, 839
Hpy99I CGWCG 1 cut(s) 1202
HpyAV CCTTC 5 cut(s) 106, 204, 209, 386, 847
HpyCH4III ACNGT 2 cut(s) 302, 1112
HpyCH4IV ACGT 1 cut(s) 1200
HpyCH4V TGCA 5 cut(s) 146, 353, 384, 441, 1235
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 232, 1136
HpyF3I CTNAG 1 cut(s) 670
HpySE526I ACGT 1 cut(s) 1200
Hsp92II CATG 5 cut(s) 179, 203, 226, 929, 1278
Ksp22I TGATCA 2 cut(s) 517, 1030
Kzo9I GATC 9 cut(s) 241, 409, 517, 1011, 1030, 1062, 1098, 1141, 1193
LmnI GCTCC 3 cut(s) 488, 511, 628
Lsp1109I GCAGC 3 cut(s) 158, 811, 1142
LweI GCATC 1 cut(s) 1126
MaeI CTAG 3 cut(s) 155, 663, 1127
MaeII ACGT 1 cut(s) 1200
MaeIII GTNAC 3 cut(s) 302, 784, 907
MalI GATC 9 cut(s) 243, 411, 519, 1013, 1032, 1064, 1100, 1143, 1195
MboI GATC 9 cut(s) 241, 409, 517, 1011, 1030, 1062, 1098, 1141, 1193
MboII GAAGA 1 cut(s) 153
MfeI CAATTG 1 cut(s) 94
MflI RGATCY 3 cut(s) 1011, 1062, 1193
MhlI GDGCHC 3 cut(s) 508, 549, 753
MlsI TGGCCA 1 cut(s) 955
MluCI AATT 7 cut(s) 4, 15, 94, 168, 562, 579, 1230
MluNI TGGCCA 1 cut(s) 955
MlyI GAGTC 1 cut(s) 851
MmeI TCCRAC 2 cut(s) 1221, 1244
Mox20I TGGCCA 1 cut(s) 955
MscI TGGCCA 1 cut(s) 955
MseI TTAA 2 cut(s) 278, 569
MslI CAYNNNNRTG 1 cut(s) 348
Msp20I TGGCCA 1 cut(s) 955
MspA1I CMGCKG 3 cut(s) 149, 591, 1133
MspI CCGG 1 cut(s) 719
MspR9I CCNGG 5 cut(s) 228, 731, 876, 1008, 1090
MunI CAATTG 1 cut(s) 94
Mva1269I GAATGC 1 cut(s) 775
MvaI CCWGG 5 cut(s) 228, 731, 876, 1008, 1090
MwoI GCNNNNNNNGC 3 cut(s) 155, 232, 1136
NdeII GATC 9 cut(s) 241, 409, 517, 1011, 1030, 1062, 1098, 1141, 1193
NlaIII CATG 5 cut(s) 179, 203, 226, 929, 1278
NlaIV GGNNCC 5 cut(s) 426, 536, 937, 1013, 1208
NmuCI GTSAC 2 cut(s) 302, 907
NspI RCATGY 2 cut(s) 179, 226
OliI CACNNNNGTG 1 cut(s) 348
PagI TCATGA 1 cut(s) 925
PciI ACATGT 1 cut(s) 175
PctI GAATGC 1 cut(s) 775
PfeI GAWTC 1 cut(s) 101
PfoI TCCNGGA 2 cut(s) 874, 1088
PkrI GCNGC 3 cut(s) 148, 826, 1132
PleI GAGTC 1 cut(s) 851
PpsI GAGTC 1 cut(s) 851
PscI ACATGT 1 cut(s) 175
PsiI TTATAA 1 cut(s) 338
Psp124BI GAGCTC 2 cut(s) 549, 753
Psp6I CCWGG 5 cut(s) 226, 729, 874, 1006, 1088
PspEI GGTNACC 1 cut(s) 784
PspGI CCWGG 5 cut(s) 226, 729, 874, 1006, 1088
PspN4I GGNNCC 5 cut(s) 426, 536, 937, 1013, 1208
PspPI GGNCC 5 cut(s) 425, 535, 869, 1086, 1187
PstI CTGCAG 1 cut(s) 148
PsuI RGATCY 3 cut(s) 1011, 1062, 1193
PvuII CAGCTG 2 cut(s) 149, 1133
RsaI GTAC 4 cut(s) 125, 725, 992, 1215
RsaNI GTAC 4 cut(s) 124, 724, 991, 1214
RseI CAYNNNNRTG 1 cut(s) 348
SacI GAGCTC 2 cut(s) 549, 753
SaqAI TTAA 2 cut(s) 278, 569
SatI GCNGC 3 cut(s) 147, 825, 1131
Sau3AI GATC 9 cut(s) 241, 409, 517, 1011, 1030, 1062, 1098, 1141, 1193
Sau96I GGNCC 5 cut(s) 425, 535, 869, 1086, 1187
SchI GAGTC 1 cut(s) 851
ScrFI CCNGG 5 cut(s) 228, 731, 876, 1008, 1090
SduI GDGCHC 3 cut(s) 508, 549, 753
SfaNI GCATC 1 cut(s) 1126
SfcI CTRYAG 1 cut(s) 144
SinI GGWCC 3 cut(s) 535, 1086, 1187
SmiMI CAYNNNNRTG 1 cut(s) 348
Sse9I AATT 7 cut(s) 4, 15, 94, 168, 562, 579, 1230
SsiI CCGC 2 cut(s) 591, 789
SspI AATATT 1 cut(s) 458
SspMI CTAG 3 cut(s) 155, 663, 1127
SstI GAGCTC 2 cut(s) 549, 753
StyD4I CCNGG 5 cut(s) 226, 729, 874, 1006, 1088
StyI CCWWGG 1 cut(s) 832
TaaI ACNGT 2 cut(s) 302, 1112
TaiI ACGT 1 cut(s) 1203
TaqI TCGA 2 cut(s) 1019, 1067
TaqII GACCGA 1 cut(s) 590
TasI AATT 7 cut(s) 4, 15, 94, 168, 562, 579, 1230
TatI WGTACW 1 cut(s) 723
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 2 cut(s) 278, 569
Tru9I TTAA 2 cut(s) 278, 569
TscAI CASTG 6 cut(s) 70, 291, 448, 490, 1081, 1117
TseFI GTSAC 2 cut(s) 302, 907
TseI GCWGC 3 cut(s) 146, 824, 1130
Tsp45I GTSAC 2 cut(s) 302, 907
TspDTI ATGAA 5 cut(s) 17, 40, 228, 575, 904
TspRI CASTG 6 cut(s) 70, 291, 448, 490, 1081, 1117
VpaK11BI GGWCC 3 cut(s) 535, 1086, 1187
XagI CCTNNNNNAGG 1 cut(s) 83
XapI RAATTY 2 cut(s) 4, 15
XceI RCATGY 2 cut(s) 179, 226
XcmI CCANNNNNNNNNTGG 1 cut(s) 643
XspI CTAG 3 cut(s) 155, 663, 1127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.