RH6DG074800

Belongs to the glycosyl hydrolase 13 family

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG074800.1

Sequence Viewer

Length: 1275 bp
ATGAATTCACTAGAAGTTTCCCTCCTGTGTTTCCTACTCTCTATTATTTTCATACCCAACTTCACTGCTTCCCAAATCCTATTTCAGGGGTTCAATTGGGAATCAGCAAAGAAGGGAGGATGGTACAACATCTTGAAGCAGTCTGCAGCTGAACTAGCTTCTTCAGGAATTACACATGTTTGGCTTCCACCATCTTCTCATGCTTGTTCAGATGAAGGATACCTGCCTGGTAGGCTCTATGATCTCACATCAAAATATGGAAGCCAAGATGAATTAAAGGCACTGGTAAAAACCTACCATGACAGTGGGATACAGAGCATAGCAGATATTGTTTTAAACCACAGATGTGCAGAGAAGAAAGATGAGAGAGGAATATTGTGCATTTTTGAAGGAGGAACTGGCGATGATCGCCTTGATTGGGGCCCGTCTCTTATTTGCAGCGACGACACAGAGTTTTCTGATGGCAAAGGGAACCCTGATACTGGAAAGAACTTTACTGGTACTCCTGACATTGATCACAAAAACACAAGGGTCCAGAATGAGCTCTCGGATTGGATGAATTGGTTGAAGACCGAAATTGGGTTCAGCGGATGGCGATTTGATTTTGTTCTGGGATATGCTCCAGAGTTCATCAAGTTGTATGTGGTAAACACAAGGCCTAGTTTCTCAGTAGGAGAGTTATGGAATTCCCTTGCTAATGAAACTGATGGGAAACCCAAGTACAACCAGGACAACCATCGCAATGAGCTTACTGGATGGATAGGGAATGCTGGAGGAGAGGTTACCGCATTTGATTTTACAACTAAAGGGATACTTCAAGCTGCTGTCCAAGGTGAACTGGGGAGGTTGAAGGACTCAAATGGAGGGCCTCCTGGATTGATTGGAATATCGCCACGCAATAGTGTGACTTTCATAGACAATCATGATACAGGTTCCACACAAAAGTTGTGGCCATTTCCATCAGATAAAGTCATTCAGGGATATGCTTACATTCTTACTCATCCAGGGATCCCATCGATATTCTATGATCATTTCTTTGACTGGGGATTGAAAGAGGAGATCTCAAAACTCACTGCGATTAGGTCCAGGAATGGGATCAAGCCCGACAGTGTGGTGCATATCCTAGCAGCTGATCCAGATCTCTATGTAGCTTCCATAGATGACAAAATCATAATGAAGATTGGTCCAAGATATGAGGTTGGGGACCTTGTACCTCCAACATTCAAAATTGCAACTTCTGGAAAGGACTATTGTGTTTGGGAGAAAACAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

424

Amino Acids

47.04

Weight (kDa)

5.2

Isoelectric Point (pI)

28.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alpha-amylase PF00128 54 - 119 3.9e-08 Alpha amylase, catalytic domain
Alpha-amyl_C2 PF07821 363 - 421 9.6e-23 Alpha-amylase C-terminal beta-sheet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 231
AciI CCGC 2 cut(s) 588, 786
AclWI GGATC 4 cut(s) 1003, 1016, 1103, 1127
AcoI YGGCCR 1 cut(s) 950
AcsI RAATTY 2 cut(s) 4, 685
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 4 cut(s) 125, 502, 722, 1212
AfiI CCNNNNNNNGG 5 cut(s) 85, 418, 482, 579, 1092
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 8 cut(s) 94, 136, 389, 568, 818, 850, 1051, 1225
AjnI CCWGG 5 cut(s) 226, 726, 871, 1003, 1085
AjuI GAANNNNNNNTTGG 2 cut(s) 66, 98
AleI CACNNNNGTG 1 cut(s) 345
AluBI AGCT 7 cut(s) 149, 158, 544, 748, 821, 1130, 1151
AluI AGCT 7 cut(s) 149, 158, 544, 748, 821, 1130, 1151
Alw21I GWGCWC 1 cut(s) 546
Alw26I GTCTC 1 cut(s) 432
AlwI GGATC 4 cut(s) 1003, 1016, 1103, 1127
AoxI GGCC 4 cut(s) 421, 656, 866, 950
ApaI GGGCCC 1 cut(s) 425
ApeKI GCWGC 4 cut(s) 146, 438, 821, 1127
ApoI RAATTY 2 cut(s) 4, 685
AspS9I GGNCC 7 cut(s) 421, 422, 532, 866, 1083, 1184, 1204
AsuHPI GGTGA 1 cut(s) 845
AvaII GGWCC 4 cut(s) 532, 1083, 1184, 1204
BaeGI GKGCMC 1 cut(s) 425
BalI TGGCCA 1 cut(s) 952
BamHI GGATCC 1 cut(s) 1008
BanII GRGCYC 2 cut(s) 425, 546
BbsI GAAGAC 1 cut(s) 575
Bbv12I GWGCWC 1 cut(s) 546
BbvI GCAGC 4 cut(s) 158, 450, 808, 1139
BccI CCATC 9 cut(s) 114, 199, 455, 585, 701, 744, 750, 967, 1021
BciT130I CCWGG 5 cut(s) 228, 728, 873, 1005, 1087
BciVI GTATCC 3 cut(s) 212, 303, 804
BclI TGATCA 2 cut(s) 514, 1027
BcoDI GTCTC 1 cut(s) 432
BfaI CTAG 4 cut(s) 11, 155, 660, 1124
BfmI CTRYAG 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 231
BfuI GTATCC 3 cut(s) 212, 303, 804
BglI GCCNNNNNGGC 1 cut(s) 232
BglII AGATCT 2 cut(s) 1059, 1138
BisI GCNGC 4 cut(s) 147, 439, 822, 1128
BlsI GCNGC 4 cut(s) 148, 440, 823, 1129
Bme1390I CCNGG 5 cut(s) 228, 728, 873, 1005, 1087
Bme18I GGWCC 4 cut(s) 532, 1083, 1184, 1204
BmgT120I GGNCC 7 cut(s) 421, 422, 532, 866, 1083, 1184, 1204
BmiI GGNNCC 7 cut(s) 422, 423, 473, 533, 934, 1010, 1205
BmrFI CCNGG 5 cut(s) 228, 728, 873, 1005, 1087
BmrI ACTGGG 2 cut(s) 848, 1051
BmuI ACTGGG 2 cut(s) 848, 1051
BpiI GAAGAC 1 cut(s) 575
BplI GAGNNNNNCTC 2 cut(s) 1046, 1078
BpmI CTGGAG 2 cut(s) 606, 792
Bsa29I ATCGAT 1 cut(s) 1016
BsaBI GATNNNNATC 1 cut(s) 1137
BsaJI CCNNGG 2 cut(s) 829, 1004
BsaXI ACNNNNNCTCC 4 cut(s) 487, 517, 765, 795
Bsc4I CCNNNNNNNGG 5 cut(s) 85, 418, 482, 579, 1092
Bse1I ACTGG 7 cut(s) 288, 403, 487, 502, 757, 843, 1046
Bse3DI GCAATG 1 cut(s) 748
Bse8I GATNNNNATC 1 cut(s) 1137
BseBI CCWGG 5 cut(s) 228, 728, 873, 1005, 1087
BseCI ATCGAT 1 cut(s) 1016
BseDI CCNNGG 2 cut(s) 829, 1004
BseGI GGATG 5 cut(s) 125, 561, 596, 761, 1000
BseJI GATNNNNATC 1 cut(s) 1137
BseLI CCNNNNNNNGG 5 cut(s) 85, 418, 482, 579, 1092
BseMI GCAATG 1 cut(s) 748
BseMII CTCAG 1 cut(s) 681
BseNI ACTGG 7 cut(s) 288, 403, 487, 502, 757, 843, 1046
BseRI GAGGAG 2 cut(s) 789, 1070
BseSI GKGCMC 1 cut(s) 425
BseXI GCAGC 4 cut(s) 158, 450, 808, 1139
BsgI GTGCAG 1 cut(s) 369
BshFI GGCC 4 cut(s) 423, 658, 868, 952
BshVI ATCGAT 1 cut(s) 1016
BsiHKAI GWGCWC 1 cut(s) 546
BslFI GGGAC 1 cut(s) 1217
BslI CCNNNNNNNGG 5 cut(s) 85, 418, 482, 579, 1092
BsmAI GTCTC 1 cut(s) 432
BsmBI CGTCTC 1 cut(s) 432
BsmFI GGGAC 1 cut(s) 1217
BsmI GAATGC 1 cut(s) 772
BsnI GGCC 4 cut(s) 423, 658, 868, 952
Bsp120I GGGCCC 1 cut(s) 421
Bsp1286I GDGCHC 2 cut(s) 425, 546
Bsp143I GATC 9 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132, 1138
BspACI CCGC 2 cut(s) 588, 786
BspANI GGCC 4 cut(s) 423, 658, 868, 952
BspCNI CTCAG 1 cut(s) 680
BspDI ATCGAT 1 cut(s) 1016
BspHI TCATGA 1 cut(s) 922
BspLI GGNNCC 7 cut(s) 422, 423, 473, 533, 934, 1010, 1205
BspMAI CTGCAG 1 cut(s) 148
BspMI ACCTGC 1 cut(s) 231
BspPI GGATC 4 cut(s) 1003, 1016, 1103, 1127
BsrDI GCAATG 1 cut(s) 748
BsrI ACTGG 7 cut(s) 288, 403, 487, 502, 757, 843, 1046
BssECI CCNNGG 2 cut(s) 829, 1004
BssMI GATC 9 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132, 1138
BssT1I CCWWGG 1 cut(s) 829
Bst2UI CCWGG 5 cut(s) 228, 728, 873, 1005, 1087
Bst4CI ACNGT 2 cut(s) 305, 1109
BstDEI CTNAG 1 cut(s) 667
BstEII GGTNACC 1 cut(s) 781
BstENI CCTNNNNNAGG 1 cut(s) 83
BstF5I GGATG 5 cut(s) 125, 561, 596, 761, 1000
BstKTI GATC 9 cut(s) 244, 409, 517, 1011, 1030, 1062, 1098, 1135, 1141
BstMAI GTCTC 1 cut(s) 432
BstMBI GATC 9 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132, 1138
BstMWI GCNNNNNNNGC 3 cut(s) 155, 232, 408
BstNI CCWGG 5 cut(s) 228, 728, 873, 1005, 1087
BstNSI RCATGY 1 cut(s) 179
BstPI GGTNACC 1 cut(s) 781
BstSCI CCNGG 5 cut(s) 226, 726, 871, 1003, 1085
BstSFI CTRYAG 1 cut(s) 144
BstSLI GKGCMC 1 cut(s) 425
BstV1I GCAGC 4 cut(s) 158, 450, 808, 1139
BstV2I GAAGAC 1 cut(s) 575
BstX2I RGATCY 3 cut(s) 1008, 1059, 1138
BstXI CCANNNNNNTGG 1 cut(s) 305
BstYI RGATCY 3 cut(s) 1008, 1059, 1138
Bsu15I ATCGAT 1 cut(s) 1016
BsuI GTATCC 3 cut(s) 212, 303, 804
BsuRI GGCC 4 cut(s) 423, 658, 868, 952
BsuTUI ATCGAT 1 cut(s) 1016
BtgZI GCGATG 2 cut(s) 417, 722
BtsCI GGATG 5 cut(s) 125, 561, 596, 761, 1000
BtsI GCAGTG 2 cut(s) 63, 1071
BtsIMutI CAGTG 5 cut(s) 63, 281, 310, 1071, 1114
BveI ACCTGC 1 cut(s) 231
CciI TCATGA 1 cut(s) 922
Cfr13I GGNCC 7 cut(s) 421, 422, 532, 866, 1083, 1184, 1204
ClaI ATCGAT 1 cut(s) 1016
Csp6I GTAC 4 cut(s) 124, 501, 721, 1211
CspCI CAANNNNNGTGG 2 cut(s) 929, 964
CviAII CATG 5 cut(s) 176, 200, 299, 923, 1272
CviQI GTAC 4 cut(s) 124, 501, 721, 1211
DdeI CTNAG 1 cut(s) 667
DpnI GATC 9 cut(s) 243, 408, 516, 1010, 1029, 1061, 1097, 1134, 1140
DpnII GATC 9 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132, 1138
DraI TTTAAA 1 cut(s) 336
EaeI YGGCCR 1 cut(s) 950
Ecl136II GAGCTC 1 cut(s) 544
Eco130I CCWWGG 1 cut(s) 829
Eco147I AGGCCT 1 cut(s) 658
Eco24I GRGCYC 2 cut(s) 425, 546
Eco47I GGWCC 4 cut(s) 532, 1083, 1184, 1204
Eco53kI GAGCTC 1 cut(s) 544
Eco57I CTGAAG 1 cut(s) 147
Eco91I GGTNACC 1 cut(s) 781
EcoICRI GAGCTC 1 cut(s) 544
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoO109I RGGNCCY 3 cut(s) 421, 866, 1204
EcoO65I GGTNACC 1 cut(s) 781
EcoRI GAATTC 2 cut(s) 4, 685
EcoRII CCWGG 5 cut(s) 226, 726, 871, 1003, 1085
EcoT14I CCWWGG 1 cut(s) 829
EcoT38I GRGCYC 2 cut(s) 425, 546
ErhI CCWWGG 1 cut(s) 829
Esp3I CGTCTC 1 cut(s) 432
FaeI CATG 5 cut(s) 179, 203, 302, 926, 1275
FalI AAGNNNNNCTT 2 cut(s) 798, 830
FaqI GGGAC 1 cut(s) 1217
FatI CATG 5 cut(s) 175, 199, 298, 922, 1271
FbaI TGATCA 2 cut(s) 514, 1027
Fnu4HI GCNGC 4 cut(s) 147, 439, 822, 1128
FokI GGATG 5 cut(s) 132, 568, 603, 768, 987
FriOI GRGCYC 2 cut(s) 425, 546
Fsp4HI GCNGC 4 cut(s) 147, 439, 822, 1128
FspBI CTAG 4 cut(s) 11, 155, 660, 1124
GluI GCNGC 4 cut(s) 147, 439, 822, 1128
GsuI CTGGAG 2 cut(s) 606, 792
HaeIII GGCC 4 cut(s) 423, 658, 868, 952
Hin1II CATG 5 cut(s) 179, 203, 302, 926, 1275
HinfI GANTC 2 cut(s) 101, 854
HphI GGTGA 1 cut(s) 845
Hpy166II GTNNAC 2 cut(s) 649, 836
Hpy188I TCNGA 4 cut(s) 211, 460, 550, 964
Hpy188III TCNNGA 8 cut(s) 133, 165, 506, 535, 623, 923, 1136, 1239
Hpy8I GTNNAC 2 cut(s) 649, 836
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 4 cut(s) 106, 209, 383, 844
HpyCH4III ACNGT 2 cut(s) 305, 1109
HpyCH4V TGCA 6 cut(s) 146, 350, 381, 438, 1117, 1232
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 232, 408
HpyF3I CTNAG 1 cut(s) 667
Hsp92II CATG 5 cut(s) 179, 203, 302, 926, 1275
Ksp22I TGATCA 2 cut(s) 514, 1027
Kzo9I GATC 9 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132, 1138
LmnI GCTCC 1 cut(s) 625
Lsp1109I GCAGC 4 cut(s) 158, 450, 808, 1139
MaeI CTAG 4 cut(s) 11, 155, 660, 1124
MaeIII GTNAC 2 cut(s) 781, 904
MalI GATC 9 cut(s) 243, 408, 516, 1010, 1029, 1061, 1097, 1134, 1140
MboI GATC 9 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132, 1138
MboII GAAGA 5 cut(s) 153, 186, 367, 580, 1189
MfeI CAATTG 1 cut(s) 94
MflI RGATCY 3 cut(s) 1008, 1059, 1138
MhlI GDGCHC 2 cut(s) 425, 546
MlsI TGGCCA 1 cut(s) 952
MluCI AATT 8 cut(s) 4, 94, 168, 272, 559, 576, 685, 1227
MluNI TGGCCA 1 cut(s) 952
MlyI GAGTC 1 cut(s) 848
MmeI TCCRAC 1 cut(s) 1241
Mox20I TGGCCA 1 cut(s) 952
MscI TGGCCA 1 cut(s) 952
MseI TTAA 2 cut(s) 275, 335
MslI CAYNNNNRTG 3 cut(s) 303, 345, 741
Msp20I TGGCCA 1 cut(s) 952
MspA1I CMGCKG 3 cut(s) 149, 588, 1130
MspR9I CCNGG 5 cut(s) 228, 728, 873, 1005, 1087
MunI CAATTG 1 cut(s) 94
Mva1269I GAATGC 1 cut(s) 772
MvaI CCWGG 5 cut(s) 228, 728, 873, 1005, 1087
MwoI GCNNNNNNNGC 3 cut(s) 155, 232, 408
NdeII GATC 9 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132, 1138
NlaIII CATG 5 cut(s) 179, 203, 302, 926, 1275
NlaIV GGNNCC 7 cut(s) 422, 423, 473, 533, 934, 1010, 1205
NmuCI GTSAC 1 cut(s) 904
NspI RCATGY 1 cut(s) 179
OliI CACNNNNGTG 1 cut(s) 345
PagI TCATGA 1 cut(s) 922
PceI AGGCCT 1 cut(s) 658
PciI ACATGT 1 cut(s) 175
PctI GAATGC 1 cut(s) 772
PfeI GAWTC 1 cut(s) 101
PfoI TCCNGGA 2 cut(s) 871, 1085
PkrI GCNGC 4 cut(s) 148, 440, 823, 1129
PleI GAGTC 1 cut(s) 848
PpsI GAGTC 1 cut(s) 848
PpuMI RGGWCCY 1 cut(s) 1204
PscI ACATGT 1 cut(s) 175
Psp124BI GAGCTC 1 cut(s) 546
Psp5II RGGWCCY 1 cut(s) 1204
Psp6I CCWGG 5 cut(s) 226, 726, 871, 1003, 1085
PspEI GGTNACC 1 cut(s) 781
PspGI CCWGG 5 cut(s) 226, 726, 871, 1003, 1085
PspN4I GGNNCC 7 cut(s) 422, 423, 473, 533, 934, 1010, 1205
PspOMI GGGCCC 1 cut(s) 421
PspPI GGNCC 7 cut(s) 421, 422, 532, 866, 1083, 1184, 1204
PspPPI RGGWCCY 1 cut(s) 1204
PstI CTGCAG 1 cut(s) 148
PsuI RGATCY 3 cut(s) 1008, 1059, 1138
PvuII CAGCTG 2 cut(s) 149, 1130
RsaI GTAC 4 cut(s) 125, 502, 722, 1212
RsaNI GTAC 4 cut(s) 124, 501, 721, 1211
RseI CAYNNNNRTG 3 cut(s) 303, 345, 741
SacI GAGCTC 1 cut(s) 546
SaqAI TTAA 2 cut(s) 275, 335
SatI GCNGC 4 cut(s) 147, 439, 822, 1128
Sau3AI GATC 9 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132, 1138
Sau96I GGNCC 7 cut(s) 421, 422, 532, 866, 1083, 1184, 1204
SchI GAGTC 1 cut(s) 848
ScrFI CCNGG 5 cut(s) 228, 728, 873, 1005, 1087
SduI GDGCHC 2 cut(s) 425, 546
SfcI CTRYAG 1 cut(s) 144
SinI GGWCC 4 cut(s) 532, 1083, 1184, 1204
SmiMI CAYNNNNRTG 3 cut(s) 303, 345, 741
Sse9I AATT 8 cut(s) 4, 94, 168, 272, 559, 576, 685, 1227
SseBI AGGCCT 1 cut(s) 658
SsiI CCGC 2 cut(s) 588, 786
SspI AATATT 1 cut(s) 375
SspMI CTAG 4 cut(s) 11, 155, 660, 1124
SstI GAGCTC 1 cut(s) 546
StuI AGGCCT 1 cut(s) 658
StyD4I CCNGG 5 cut(s) 226, 726, 871, 1003, 1085
StyI CCWWGG 1 cut(s) 829
TaaI ACNGT 2 cut(s) 305, 1109
TaqI TCGA 1 cut(s) 1016
TaqII GACCGA 1 cut(s) 587
TasI AATT 8 cut(s) 4, 94, 168, 272, 559, 576, 685, 1227
TatI WGTACW 1 cut(s) 720
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 2 cut(s) 275, 335
Tru9I TTAA 2 cut(s) 275, 335
TscAI CASTG 5 cut(s) 70, 288, 310, 1078, 1114
TseFI GTSAC 1 cut(s) 904
TseI GCWGC 4 cut(s) 146, 438, 821, 1127
Tsp45I GTSAC 1 cut(s) 904
TspDTI ATGAA 9 cut(s) 17, 40, 228, 285, 572, 619, 714, 901, 1190
TspRI CASTG 5 cut(s) 70, 288, 310, 1078, 1114
VpaK11BI GGWCC 4 cut(s) 532, 1083, 1184, 1204
XagI CCTNNNNNAGG 1 cut(s) 83
XapI RAATTY 2 cut(s) 4, 685
XceI RCATGY 1 cut(s) 179
XspI CTAG 4 cut(s) 11, 155, 660, 1124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.