RLG00000014685

Belongs to the glycosyl hydrolase 13 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
56290930 .. 56293163
2234 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014685

Sequence Viewer

Length: 1278 bp
ATGAATTCACTAGAAGTTTCCCTCCTCTGTTTCCTACTCTCTATTATTTTCATACCCAACTTCACTGCTTCCCAAATCCTATTTCAGGGGTTCAATTGGGAATCAGCAAAGAAGGGAGGATGGTACAACATCTTGAAGCAGTCTGCAGCTGAACTAGCTTCTTCAGGAATTACACACGTTTGGCTTCCACCACCTTCTCATGCTATTTCAGATGAAGGATACATGCCTGGTAGGCTTTATGATCTCACATCAAAATATGGAAGTCAAGATGAATTAAAGGCACTGGTAAAAACCTACCACGACAATGGGATACAGAGCATAGCAGATATTGTTATAAACCACAGATGTGCAGAGAAGCAAGATGAGAGAGGAATATGGTGCATTTTTGAAGGAGGAACGCCCGATGATCGCCTTGATTGGGGCCCGTCTCTTATTTGCAGCGACGACACAAAATATTCTGATGGCAAGGGCAACCCTGACACTGGAGCTGACTTTGGTGGTGCTCCTGACATTGATCACAAAAACACAAGGGTCCAGATTGAGCTCTCGGATTGGATGAATTGGTTGAAGACCGAAATTGGGTTCAGCGGATGGAGATTTGATTTTGTCAGGGGATATGCTCCAGAGTTCACCAAGTTGTATGTAGCAAACACAAAGCCTAGTTTCTCAGTAGGAGAGTTATGGAATTCCCTTGCTTATGAAAGTGATGGGAAACCCAAGTACAACCAGGACAACCATCGCAACGAGCTTGCTGGATGGATAGGGAATGCTGGAGGAGAGGTTACCGCATTTGATTTTACAACTAAAGGGATACTTCAAGCTGCTGTCCTAGGCGAACTGGGGAGGTTGAAGGACTCGAATGGAGGGCCTCCTGGATTGATTGGAATATCGCCACGCAATAGTGTAACTTTCATAGACAATCATGATACAGGTTCCACACAAAAGTTGTGGCCATTTCCATCAGATGAAGTCATTCAGGGATATGCTTACATTCTTACTCATCCAGGGATCCCATCGATATTCTATGATCATTTCTTTGACTGGAGATTGAAAGAGCAGATCTCGAATCTCACTGCGATTAGGTCCAGGAATGGGATCAAACCCGACAGTGTGGTGCGTATCCTAGCAGCTGATCCAGATGTCTATGTAGCTTCCATAGATGACAAAATCATAATGAAGATTGGTATGCGATTTGATGTTAGCGAATTTGTACCTCCAACAACATTCAAAATTGCAACTTCTGGAATGAGCTATTGTGTTTGGGAGAAAACAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

426

Amino Acids

47.31

Weight (kDa)

5.12

Isoelectric Point (pI)

31.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alpha-amylase PF00128 54 - 119 1.3e-08 Alpha amylase, catalytic domain
Alpha-amyl_C2 PF07821 363 - 422 6.6e-21 Alpha-amylase C-terminal beta-sheet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 335
AciI CCGC 2 cut(s) 588, 786
AclWI GGATC 4 cut(s) 1003, 1016, 1103, 1127
AcoI YGGCCR 1 cut(s) 950
AcsI RAATTY 3 cut(s) 4, 685, 1205
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 3 cut(s) 125, 722, 1212
AfiI CCNNNNNNNGG 5 cut(s) 85, 418, 482, 579, 1092
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 8 cut(s) 94, 136, 389, 568, 818, 850, 1051, 1228
AjnI CCWGG 5 cut(s) 226, 726, 871, 1003, 1085
AjuI GAANNNNNNNTTGG 2 cut(s) 66, 98
AleI CACNNNNGTG 1 cut(s) 345
AluBI AGCT 9 cut(s) 149, 158, 488, 544, 748, 821, 1130, 1151, 1251
AluI AGCT 9 cut(s) 149, 158, 488, 544, 748, 821, 1130, 1151, 1251
Alw21I GWGCWC 2 cut(s) 505, 546
Alw26I GTCTC 1 cut(s) 432
AlwI GGATC 4 cut(s) 1003, 1016, 1103, 1127
AoxI GGCC 3 cut(s) 421, 866, 950
ApaI GGGCCC 1 cut(s) 425
ApeKI GCWGC 4 cut(s) 146, 438, 821, 1127
ApoI RAATTY 3 cut(s) 4, 685, 1205
Asp700I GAANNNNTTC 1 cut(s) 972
AspA2I CCTAGG 1 cut(s) 829
AspS9I GGNCC 5 cut(s) 421, 422, 532, 866, 1083
AsuHPI GGTGA 1 cut(s) 622
AvaII GGWCC 2 cut(s) 532, 1083
AvrII CCTAGG 1 cut(s) 829
BaeGI GKGCMC 1 cut(s) 425
BalI TGGCCA 1 cut(s) 952
BamHI GGATCC 1 cut(s) 1008
BanII GRGCYC 2 cut(s) 425, 546
BbsI GAAGAC 1 cut(s) 575
Bbv12I GWGCWC 2 cut(s) 505, 546
BbvI GCAGC 4 cut(s) 158, 450, 808, 1139
BccI CCATC 8 cut(s) 114, 455, 585, 701, 744, 750, 967, 1021
BciT130I CCWGG 5 cut(s) 228, 728, 873, 1005, 1087
BciVI GTATCC 4 cut(s) 212, 303, 804, 1130
BclI TGATCA 2 cut(s) 514, 1027
BcoDI GTCTC 1 cut(s) 432
BfaI CTAG 5 cut(s) 11, 155, 660, 830, 1124
BfmI CTRYAG 1 cut(s) 144
BfuI GTATCC 4 cut(s) 212, 303, 804, 1130
BglI GCCNNNNNGGC 1 cut(s) 232
BglII AGATCT 1 cut(s) 1059
BisI GCNGC 4 cut(s) 147, 439, 822, 1128
BlnI CCTAGG 1 cut(s) 829
BlsI GCNGC 4 cut(s) 148, 440, 823, 1129
Bme1390I CCNGG 5 cut(s) 228, 728, 873, 1005, 1087
Bme18I GGWCC 2 cut(s) 532, 1083
BmgT120I GGNCC 5 cut(s) 421, 422, 532, 866, 1083
BmiI GGNNCC 5 cut(s) 422, 423, 533, 934, 1010
BmrFI CCNGG 5 cut(s) 228, 728, 873, 1005, 1087
BmrI ACTGGG 1 cut(s) 848
BmuI ACTGGG 1 cut(s) 848
BpiI GAAGAC 1 cut(s) 575
BplI GAGNNNNNCTC 2 cut(s) 1046, 1078
BpmI CTGGAG 4 cut(s) 504, 606, 792, 1063
Bsa29I ATCGAT 1 cut(s) 1016
BsaJI CCNNGG 2 cut(s) 829, 1004
BsaXI ACNNNNNCTCC 2 cut(s) 765, 795
Bsc4I CCNNNNNNNGG 5 cut(s) 85, 418, 482, 579, 1092
Bse1I ACTGG 4 cut(s) 288, 487, 843, 1046
BseBI CCWGG 5 cut(s) 228, 728, 873, 1005, 1087
BseCI ATCGAT 1 cut(s) 1016
BseDI CCNNGG 2 cut(s) 829, 1004
BseGI GGATG 5 cut(s) 125, 561, 596, 761, 1000
BseLI CCNNNNNNNGG 5 cut(s) 85, 418, 482, 579, 1092
BseMII CTCAG 1 cut(s) 681
BseNI ACTGG 4 cut(s) 288, 487, 843, 1046
BseRI GAGGAG 2 cut(s) 14, 789
BseSI GKGCMC 1 cut(s) 425
BseXI GCAGC 4 cut(s) 158, 450, 808, 1139
BsgI GTGCAG 1 cut(s) 369
BshFI GGCC 3 cut(s) 423, 868, 952
BshVI ATCGAT 1 cut(s) 1016
BsiHKAI GWGCWC 2 cut(s) 505, 546
BslI CCNNNNNNNGG 5 cut(s) 85, 418, 482, 579, 1092
BsmAI GTCTC 1 cut(s) 432
BsmBI CGTCTC 1 cut(s) 432
BsmI GAATGC 1 cut(s) 772
BsnI GGCC 3 cut(s) 423, 868, 952
Bsp120I GGGCCC 1 cut(s) 421
Bsp1286I GDGCHC 3 cut(s) 425, 505, 546
Bsp143I GATC 8 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132
BspACI CCGC 2 cut(s) 588, 786
BspANI GGCC 3 cut(s) 423, 868, 952
BspCNI CTCAG 1 cut(s) 680
BspDI ATCGAT 1 cut(s) 1016
BspHI TCATGA 1 cut(s) 922
BspLI GGNNCC 5 cut(s) 422, 423, 533, 934, 1010
BspMAI CTGCAG 1 cut(s) 148
BspPI GGATC 4 cut(s) 1003, 1016, 1103, 1127
BsrI ACTGG 4 cut(s) 288, 487, 843, 1046
BssECI CCNNGG 2 cut(s) 829, 1004
BssMI GATC 8 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132
BssT1I CCWWGG 1 cut(s) 829
Bst2UI CCWGG 5 cut(s) 228, 728, 873, 1005, 1087
Bst4CI ACNGT 1 cut(s) 1109
BstC8I GCNNGC 1 cut(s) 750
BstDEI CTNAG 1 cut(s) 667
BstEII GGTNACC 1 cut(s) 781
BstENI CCTNNNNNAGG 1 cut(s) 83
BstF5I GGATG 5 cut(s) 125, 561, 596, 761, 1000
BstKTI GATC 8 cut(s) 244, 409, 517, 1011, 1030, 1062, 1098, 1135
BstMAI GTCTC 1 cut(s) 432
BstMBI GATC 8 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132
BstMWI GCNNNNNNNGC 2 cut(s) 155, 232
BstNI CCWGG 5 cut(s) 228, 728, 873, 1005, 1087
BstNSI RCATGY 1 cut(s) 226
BstPI GGTNACC 1 cut(s) 781
BstSCI CCNGG 5 cut(s) 226, 726, 871, 1003, 1085
BstSFI CTRYAG 1 cut(s) 144
BstSLI GKGCMC 1 cut(s) 425
BstV1I GCAGC 4 cut(s) 158, 450, 808, 1139
BstV2I GAAGAC 1 cut(s) 575
BstX2I RGATCY 2 cut(s) 1008, 1059
BstXI CCANNNNNNTGG 1 cut(s) 305
BstYI RGATCY 2 cut(s) 1008, 1059
Bsu15I ATCGAT 1 cut(s) 1016
BsuI GTATCC 4 cut(s) 212, 303, 804, 1130
BsuRI GGCC 3 cut(s) 423, 868, 952
BsuTUI ATCGAT 1 cut(s) 1016
BtgZI GCGATG 1 cut(s) 722
BtsCI GGATG 5 cut(s) 125, 561, 596, 761, 1000
BtsI GCAGTG 2 cut(s) 63, 1071
BtsIMutI CAGTG 5 cut(s) 63, 281, 480, 1071, 1114
Cac8I GCNNGC 1 cut(s) 750
CciI TCATGA 1 cut(s) 922
Cfr13I GGNCC 5 cut(s) 421, 422, 532, 866, 1083
ClaI ATCGAT 1 cut(s) 1016
Csp6I GTAC 3 cut(s) 124, 721, 1211
CspCI CAANNNNNGTGG 2 cut(s) 929, 964
CviAII CATG 4 cut(s) 200, 223, 923, 1275
CviQI GTAC 3 cut(s) 124, 721, 1211
DdeI CTNAG 1 cut(s) 667
DpnI GATC 8 cut(s) 243, 408, 516, 1010, 1029, 1061, 1097, 1134
DpnII GATC 8 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132
EaeI YGGCCR 1 cut(s) 950
Ecl136II GAGCTC 1 cut(s) 544
Eco130I CCWWGG 1 cut(s) 829
Eco24I GRGCYC 2 cut(s) 425, 546
Eco47I GGWCC 2 cut(s) 532, 1083
Eco53kI GAGCTC 1 cut(s) 544
Eco57I CTGAAG 1 cut(s) 147
Eco91I GGTNACC 1 cut(s) 781
EcoICRI GAGCTC 1 cut(s) 544
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoO109I RGGNCCY 2 cut(s) 421, 866
EcoO65I GGTNACC 1 cut(s) 781
EcoRI GAATTC 2 cut(s) 4, 685
EcoRII CCWGG 5 cut(s) 226, 726, 871, 1003, 1085
EcoT14I CCWWGG 1 cut(s) 829
EcoT38I GRGCYC 2 cut(s) 425, 546
ErhI CCWWGG 1 cut(s) 829
Esp3I CGTCTC 1 cut(s) 432
FaeI CATG 4 cut(s) 203, 226, 926, 1278
FalI AAGNNNNNCTT 2 cut(s) 798, 830
FatI CATG 4 cut(s) 199, 222, 922, 1274
FbaI TGATCA 2 cut(s) 514, 1027
Fnu4HI GCNGC 4 cut(s) 147, 439, 822, 1128
FokI GGATG 5 cut(s) 132, 568, 603, 768, 987
FriOI GRGCYC 2 cut(s) 425, 546
Fsp4HI GCNGC 4 cut(s) 147, 439, 822, 1128
FspBI CTAG 5 cut(s) 11, 155, 660, 830, 1124
GluI GCNGC 4 cut(s) 147, 439, 822, 1128
GsuI CTGGAG 4 cut(s) 504, 606, 792, 1063
HaeIII GGCC 3 cut(s) 423, 868, 952
Hin1II CATG 4 cut(s) 203, 226, 926, 1278
HinfI GANTC 3 cut(s) 101, 854, 1066
HphI GGTGA 1 cut(s) 622
Hpy166II GTNNAC 1 cut(s) 630
Hpy188I TCNGA 4 cut(s) 211, 460, 550, 964
Hpy8I GTNNAC 1 cut(s) 630
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 5 cut(s) 106, 204, 209, 383, 844
HpyCH4III ACNGT 1 cut(s) 1109
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 5 cut(s) 146, 350, 381, 438, 1235
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 232
HpyF3I CTNAG 1 cut(s) 667
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 4 cut(s) 203, 226, 926, 1278
Ksp22I TGATCA 2 cut(s) 514, 1027
Kzo9I GATC 8 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132
LmnI GCTCC 3 cut(s) 485, 508, 625
Lsp1109I GCAGC 4 cut(s) 158, 450, 808, 1139
MaeI CTAG 5 cut(s) 11, 155, 660, 830, 1124
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 781, 904
MalI GATC 8 cut(s) 243, 408, 516, 1010, 1029, 1061, 1097, 1134
MboI GATC 8 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132
MboII GAAGA 3 cut(s) 153, 580, 1189
MfeI CAATTG 1 cut(s) 94
MflI RGATCY 2 cut(s) 1008, 1059
MhlI GDGCHC 3 cut(s) 425, 505, 546
MlsI TGGCCA 1 cut(s) 952
MluCI AATT 9 cut(s) 4, 94, 168, 272, 559, 576, 685, 1205, 1230
MluNI TGGCCA 1 cut(s) 952
MlyI GAGTC 1 cut(s) 848
MmeI TCCRAC 1 cut(s) 1241
Mox20I TGGCCA 1 cut(s) 952
MroXI GAANNNNTTC 1 cut(s) 972
MscI TGGCCA 1 cut(s) 952
MseI TTAA 1 cut(s) 275
MslI CAYNNNNRTG 2 cut(s) 303, 345
Msp20I TGGCCA 1 cut(s) 952
MspA1I CMGCKG 3 cut(s) 149, 588, 1130
MspR9I CCNGG 5 cut(s) 228, 728, 873, 1005, 1087
MunI CAATTG 1 cut(s) 94
Mva1269I GAATGC 1 cut(s) 772
MvaI CCWGG 5 cut(s) 228, 728, 873, 1005, 1087
MwoI GCNNNNNNNGC 2 cut(s) 155, 232
NdeII GATC 8 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132
NlaIII CATG 4 cut(s) 203, 226, 926, 1278
NlaIV GGNNCC 5 cut(s) 422, 423, 533, 934, 1010
NspI RCATGY 1 cut(s) 226
OliI CACNNNNGTG 1 cut(s) 345
PagI TCATGA 1 cut(s) 922
PctI GAATGC 1 cut(s) 772
PdmI GAANNNNTTC 1 cut(s) 972
PfeI GAWTC 2 cut(s) 101, 1066
PfoI TCCNGGA 2 cut(s) 871, 1085
PkrI GCNGC 4 cut(s) 148, 440, 823, 1129
PleI GAGTC 1 cut(s) 848
PpsI GAGTC 1 cut(s) 848
PsiI TTATAA 1 cut(s) 335
Psp124BI GAGCTC 1 cut(s) 546
Psp6I CCWGG 5 cut(s) 226, 726, 871, 1003, 1085
PspEI GGTNACC 1 cut(s) 781
PspGI CCWGG 5 cut(s) 226, 726, 871, 1003, 1085
PspN4I GGNNCC 5 cut(s) 422, 423, 533, 934, 1010
PspOMI GGGCCC 1 cut(s) 421
PspPI GGNCC 5 cut(s) 421, 422, 532, 866, 1083
PstI CTGCAG 1 cut(s) 148
PsuI RGATCY 2 cut(s) 1008, 1059
PvuII CAGCTG 2 cut(s) 149, 1130
RsaI GTAC 3 cut(s) 125, 722, 1212
RsaNI GTAC 3 cut(s) 124, 721, 1211
RseI CAYNNNNRTG 2 cut(s) 303, 345
SacI GAGCTC 1 cut(s) 546
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 4 cut(s) 147, 439, 822, 1128
Sau3AI GATC 8 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132
Sau96I GGNCC 5 cut(s) 421, 422, 532, 866, 1083
SchI GAGTC 1 cut(s) 848
ScrFI CCNGG 5 cut(s) 228, 728, 873, 1005, 1087
SduI GDGCHC 3 cut(s) 425, 505, 546
SfcI CTRYAG 1 cut(s) 144
SinI GGWCC 2 cut(s) 532, 1083
SmiMI CAYNNNNRTG 2 cut(s) 303, 345
Sse9I AATT 9 cut(s) 4, 94, 168, 272, 559, 576, 685, 1205, 1230
SsiI CCGC 2 cut(s) 588, 786
SspI AATATT 1 cut(s) 455
SspMI CTAG 5 cut(s) 11, 155, 660, 830, 1124
SstI GAGCTC 1 cut(s) 546
StyD4I CCNGG 5 cut(s) 226, 726, 871, 1003, 1085
StyI CCWWGG 1 cut(s) 829
TaaI ACNGT 1 cut(s) 1109
TaiI ACGT 1 cut(s) 180
TaqI TCGA 3 cut(s) 857, 1016, 1064
TaqII GACCGA 1 cut(s) 587
TasI AATT 9 cut(s) 4, 94, 168, 272, 559, 576, 685, 1205, 1230
TatI WGTACW 1 cut(s) 720
TfiI GAWTC 2 cut(s) 101, 1066
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TscAI CASTG 5 cut(s) 70, 288, 487, 1078, 1114
TseI GCWGC 4 cut(s) 146, 438, 821, 1127
TspDTI ATGAA 9 cut(s) 17, 40, 228, 285, 572, 714, 901, 981, 1190
TspRI CASTG 5 cut(s) 70, 288, 487, 1078, 1114
VpaK11BI GGWCC 2 cut(s) 532, 1083
XagI CCTNNNNNAGG 1 cut(s) 83
XapI RAATTY 3 cut(s) 4, 685, 1205
XceI RCATGY 1 cut(s) 226
XmaJI CCTAGG 1 cut(s) 829
XmnI GAANNNNTTC 1 cut(s) 972
XspI CTAG 5 cut(s) 11, 155, 660, 830, 1124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.