Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001929

Physical Location & Seq

Genomic Coordinates Reverse (-)

9647580 .. 9650374

Gene Structure 2795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g07850.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGTCTTTTGGCAAAGTATCAATCAGGGAAACTGCAGAGAAGCAAGATGGTAGAGGAATATGGTGCATCTTCGAAGGAGGAACTAACGATAATCGTCTTTATTGGGGCCCATCTCTTATTTACAGCAATGACACGGCTTATTCTGATGGCAAGGGGAACCCTGACACTAGAGAGGACTTTGGCGCTGCTCCTGACATTGACCACAAAAACACTAGGGTCCAGAAAGAGCTCTCGGATTGGATGAATTGGTTAAAGACTGATATTGGATTGAGTGGTTGGGCATTTGATTTTGTCAAGGGATATGCTCCTGAATTTACCAAGTTGTATGCGACAAACACAAGTCCAAATTTCACATTAGGGGAACTTTGGAATTCCCTTTCTTATGGAAGTGATGGAAATCCGGACCCTTATCAGGATGCGCATCGTGGAGAGTTAGTGGGATGGGTGGAGAGTGCCGGAGGAGATGTCACAGCATTTGATTTCACAACTAAAGGGATACTTCAGGCTGCAGTCCAAGGGGAAATGTTTGACTTAGATGCTAAGGTTCCAAGGAGACATCTTTCGACTTCTGGAGAATGTTTACAACAAAAAGGACACCTGCTGATTGAAATATATTCAGTGCTAATTCTCAAGTATTTCAGTGCACTACACACTGCAGAGCGTGAATGTTCTTCGAAAACTTGGCAATACAATTACAAGTGTATTATGTGCTTAGTTATCAATCCGACCAAACCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko04973 map00500 map01100 map04973

Pfam Domains

Protein Families

Alpha-amyl_C2 Alpha-amylase

Protein Analysis

247

Amino Acids

27.61

Weight (kDa)

5.15

Isoelectric Point (pI)

27.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G25000
fragaria_vesca	FvH4_2g06030 FvH4_2g06030 FvH4_2g06030 FvH4_2g06030 FvH4_2g06030 FvH4_2g06030 FvH4_2g06030 FvH4_2g06030 FvH4_2g06030
malus_domestica	MD00G1035200.v1.1 MD05G1081100.v1.1 MD05G1081200.v1.1
prunus_persica	Prupe.8G125500_v2.0.a1
pyrus_communis	pycom05g07460 pycom10g07850
rosa_chinensis	RchiOBHm_Chr6g0257251 RchiOBHm_Chr6g0257281 RchiOBHm_Chr6g0257311
rosa_laevigata	RLG00000014683 RLG00000014684 RLG00000014685 RLG00000014687
rosa_multiflora	Rmu_sc0000820.1_g000005 Rmu_sc0002648.1_g000009 Rmu_sc0008660.1_g000002
rosa_roxburghii	Rroxscaffold_7G00208570 Rroxscaffold_7G00208600 Rroxscaffold_7G00208610
rosa_rugosa	Rorug04G0263800 Rorug05G0573700 Rorug05G0573800 Rorug05G0574000
rosa_samantha	Rh6AG090900 Rh6AG091400 Rh6AG091700 Rh6BG082600 Rh6BG082700 Rh6CG078700 Rh6CG079000 Rh6CG079200 Rh6DG074500 Rh6DG074800
rosa_wichuraiana	Rw6G007930 Rw6G007940 Rw6G007950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	606
Acc16I	TGCGCA	1 cut(s)	420
Acc36I	ACCTGC	1 cut(s)	606
AccIII	TCCGGA	1 cut(s)	400
AcsI	RAATTY	3 cut(s)	311, 346, 370
AcuI	CTGAAG	1 cut(s)	485
AfiI	CCNNNNNNNGG	1 cut(s)	412
AgsI	TTSAA	1 cut(s)	608
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
Alw21I	GWGCWC	2 cut(s)	231, 646
Alw26I	GTCTC	1 cut(s)	547
Alw44I	GTGCAC	1 cut(s)	642
Aor13HI	TCCGGA	1 cut(s)	400
AoxI	GGCC	1 cut(s)	106
ApaI	GGGCCC	1 cut(s)	110
ApaLI	GTGCAC	1 cut(s)	642
ApeKI	GCWGC	2 cut(s)	185, 506
ApoI	RAATTY	3 cut(s)	311, 346, 370
AspLEI	GCGC	2 cut(s)	185, 421
AspS9I	GGNCC	4 cut(s)	106, 107, 217, 403
AsuII	TTCGAA	2 cut(s)	72, 674
AvaII	GGWCC	2 cut(s)	217, 403
BaeGI	GKGCMC	2 cut(s)	110, 646
BanII	GRGCYC	2 cut(s)	110, 231
Bbv12I	GWGCWC	2 cut(s)	231, 646
BbvI	GCAGC	2 cut(s)	172, 493
BccI	CCATC	5 cut(s)	41, 118, 140, 386, 435
BceAI	ACGGC	1 cut(s)	150
BciVI	GTATCC	1 cut(s)	489
BcoDI	GTCTC	1 cut(s)	547
BfaI	CTAG	2 cut(s)	168, 213
BfmI	CTRYAG	3 cut(s)	33, 507, 654
BfoI	RGCGCY	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	606
BfuI	GTATCC	1 cut(s)	489
BisI	GCNGC	2 cut(s)	186, 507
BlsI	GCNGC	2 cut(s)	187, 508
Bme18I	GGWCC	2 cut(s)	217, 403
BmgT120I	GGNCC	4 cut(s)	106, 107, 217, 403
BmiI	GGNNCC	6 cut(s)	107, 108, 158, 218, 405, 546
BmsI	GCATC	4 cut(s)	75, 406, 430, 526
BpmI	CTGGAG	1 cut(s)	591
Bpu10I	CCTNAGC	1 cut(s)	540
Bpu14I	TTCGAA	2 cut(s)	72, 674
BpuEI	CTTGAG	1 cut(s)	614
BsaBI	GATNNNNATC	2 cut(s)	396, 420
BsaJI	CCNNGG	2 cut(s)	514, 548
BsaWI	WCCGGW	1 cut(s)	400
BsaXI	ACNNNNNCTCC	4 cut(s)	420, 450, 450, 480
Bsc4I	CCNNNNNNNGG	1 cut(s)	412
Bse3DI	GCAATG	1 cut(s)	133
Bse8I	GATNNNNATC	2 cut(s)	396, 420
BseAI	TCCGGA	1 cut(s)	400
BseDI	CCNNGG	2 cut(s)	514, 548
BseGI	GGATG	3 cut(s)	246, 421, 446
BseJI	GATNNNNATC	2 cut(s)	396, 420
BseLI	CCNNNNNNNGG	1 cut(s)	412
BseMI	GCAATG	1 cut(s)	133
BseRI	GAGGAG	1 cut(s)	474
BseSI	GKGCMC	2 cut(s)	110, 646
BseXI	GCAGC	2 cut(s)	172, 493
BshFI	GGCC	1 cut(s)	108
BsiHKAI	GWGCWC	2 cut(s)	231, 646
BsiSI	CCGG	2 cut(s)	401, 456
BslI	CCNNNNNNNGG	1 cut(s)	412
BsmAI	GTCTC	1 cut(s)	547
BsnI	GGCC	1 cut(s)	108
Bsp119I	TTCGAA	2 cut(s)	72, 674
Bsp120I	GGGCCC	1 cut(s)	106
Bsp1286I	GDGCHC	3 cut(s)	110, 231, 646
Bsp13I	TCCGGA	1 cut(s)	400
BspANI	GGCC	1 cut(s)	108
BspEI	TCCGGA	1 cut(s)	400
BspLI	GGNNCC	6 cut(s)	107, 108, 158, 218, 405, 546
BspMAI	CTGCAG	3 cut(s)	37, 511, 658
BspMI	ACCTGC	1 cut(s)	606
BspT104I	TTCGAA	2 cut(s)	72, 674
BsrDI	GCAATG	1 cut(s)	133
BssECI	CCNNGG	2 cut(s)	514, 548
BssT1I	CCWWGG	2 cut(s)	514, 548
BstBI	TTCGAA	2 cut(s)	72, 674
BstDEI	CTNAG	3 cut(s)	532, 540, 712
BstF5I	GGATG	3 cut(s)	246, 421, 446
BstH2I	RGCGCY	1 cut(s)	186
BstHHI	GCGC	2 cut(s)	185, 421
BstMAI	GTCTC	1 cut(s)	547
BstSFI	CTRYAG	3 cut(s)	33, 507, 654
BstSLI	GKGCMC	2 cut(s)	110, 646
BstV1I	GCAGC	2 cut(s)	172, 493
BsuI	GTATCC	1 cut(s)	489
BsuRI	GGCC	1 cut(s)	108
BtsCI	GGATG	3 cut(s)	246, 421, 446
BtsI	GCAGTG	1 cut(s)	651
BtsIMutI	CAGTG	3 cut(s)	624, 646, 651
BveI	ACCTGC	1 cut(s)	606
CfoI	GCGC	2 cut(s)	185, 421
Cfr13I	GGNCC	4 cut(s)	106, 107, 217, 403
CviJI	RGCY	4 cut(s)	108, 137, 229, 506
CviKI_1	RGCY	4 cut(s)	108, 137, 229, 506
DdeI	CTNAG	3 cut(s)	532, 540, 712
Ecl136II	GAGCTC	1 cut(s)	229
Eco130I	CCWWGG	2 cut(s)	514, 548
Eco24I	GRGCYC	2 cut(s)	110, 231
Eco47I	GGWCC	2 cut(s)	217, 403
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	485
EcoICRI	GAGCTC	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	106
EcoRI	GAATTC	1 cut(s)	370
EcoT14I	CCWWGG	2 cut(s)	514, 548
EcoT38I	GRGCYC	2 cut(s)	110, 231
ErhI	CCWWGG	2 cut(s)	514, 548
FaiI	YATR	6 cut(s)	61, 303, 327, 384, 613, 707
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
Fnu4HI	GCNGC	2 cut(s)	186, 507
FokI	GGATG	3 cut(s)	253, 428, 453
FriOI	GRGCYC	2 cut(s)	110, 231
Fsp4HI	GCNGC	2 cut(s)	186, 507
FspAI	RTGCGCAY	1 cut(s)	420
FspBI	CTAG	2 cut(s)	168, 213
FspI	TGCGCA	1 cut(s)	420
GlaI	GCGC	2 cut(s)	184, 420
GluI	GCNGC	2 cut(s)	186, 507
GsuI	CTGGAG	1 cut(s)	591
HaeII	RGCGCY	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	2 cut(s)	401, 456
HhaI	GCGC	2 cut(s)	185, 421
Hin6I	GCGC	2 cut(s)	183, 419
HinP1I	GCGC	2 cut(s)	183, 419
HpaII	CCGG	2 cut(s)	401, 456
Hpy166II	GTNNAC	2 cut(s)	581, 644
Hpy188I	TCNGA	3 cut(s)	145, 235, 726
Hpy188III	TCNNGA	6 cut(s)	191, 220, 308, 401, 413, 570
Hpy8I	GTNNAC	2 cut(s)	581, 644
HpyAV	CCTTC	1 cut(s)	68
HpyCH4V	TGCA	5 cut(s)	35, 66, 509, 644, 656
HpyF3I	CTNAG	3 cut(s)	532, 540, 712
HspAI	GCGC	2 cut(s)	183, 419
Kpn2I	TCCGGA	1 cut(s)	400
LmnI	GCTCC	2 cut(s)	193, 310
Lsp1109I	GCAGC	2 cut(s)	172, 493
LweI	GCATC	4 cut(s)	75, 406, 430, 526
MaeI	CTAG	2 cut(s)	168, 213
MaeIII	GTNAC	1 cut(s)	466
MboII	GAAGA	2 cut(s)	61, 663
MhlI	GDGCHC	3 cut(s)	110, 231, 646
MluCI	AATT	7 cut(s)	244, 311, 346, 370, 624, 691, 736
MnlI	CCTC	4 cut(s)	47, 71, 166, 452
MroI	TCCGGA	1 cut(s)	400
MseI	TTAA	1 cut(s)	251
MspI	CCGG	2 cut(s)	401, 456
NlaIV	GGNNCC	6 cut(s)	107, 108, 158, 218, 405, 546
NmuCI	GTSAC	1 cut(s)	466
NsbI	TGCGCA	1 cut(s)	420
NspV	TTCGAA	2 cut(s)	72, 674
PaqCI	CACCTGC	1 cut(s)	606
PkrI	GCNGC	2 cut(s)	187, 508
Psp124BI	GAGCTC	1 cut(s)	231
PspN4I	GGNNCC	6 cut(s)	107, 108, 158, 218, 405, 546
PspOMI	GGGCCC	1 cut(s)	106
PspPI	GGNCC	4 cut(s)	106, 107, 217, 403
PstI	CTGCAG	3 cut(s)	37, 511, 658
SacI	GAGCTC	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	2 cut(s)	186, 507
Sau96I	GGNCC	4 cut(s)	106, 107, 217, 403
SduI	GDGCHC	3 cut(s)	110, 231, 646
SetI	ASST	3 cut(s)	231, 546, 600
SfaNI	GCATC	4 cut(s)	75, 406, 430, 526
SfcI	CTRYAG	3 cut(s)	33, 507, 654
SfuI	TTCGAA	2 cut(s)	72, 674
SinI	GGWCC	2 cut(s)	217, 403
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
Sse9I	AATT	7 cut(s)	244, 311, 346, 370, 624, 691, 736
SspMI	CTAG	2 cut(s)	168, 213
SstI	GAGCTC	1 cut(s)	231
StyI	CCWWGG	2 cut(s)	514, 548
TaqI	TCGA	3 cut(s)	72, 563, 674
TasI	AATT	7 cut(s)	244, 311, 346, 370, 624, 691, 736
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TscAI	CASTG	3 cut(s)	624, 646, 658
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	2 cut(s)	185, 506
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	1 cut(s)	257
TspRI	CASTG	3 cut(s)	624, 646, 658
VneI	GTGCAC	1 cut(s)	642
VpaK11BI	GGWCC	2 cut(s)	217, 403
XapI	RAATTY	3 cut(s)	311, 346, 370
XspI	CTAG	2 cut(s)	168, 213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.