RLG00000014684

Belongs to the glycosyl hydrolase 13 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
56270349 .. 56272532
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014684

Sequence Viewer

Length: 1275 bp
ATGAATTCACTAGAAGTTTACCTCCTCTGTTTCCTACTCTCTATTATTTTCATACCCAACTTCACTGCTTCCCAAATCCTATTTCAGGGGTTCAATTGGGAATCAGCAAAGAAGGGAGGATGGTACAACATCTTGAAGCAGTCTGCGGCTGAACTAGCTTCTTCAGGAATTACACACGTTTGGCTTCCACCACCTTCTCATGCTATTTCAGATGAAGGATACATGCCTGGTAGGCTCTATGATCTCGCATCAAAATATGGAAGCCAAGATGAATTAAAGGCACTGGTAAAAACCTACCATGACAATGGGATACAGAGCATAGCAGATATTGTTATAAACCACAGATGTGCAGAGAAGCAAGATGAGAGAGGAATATGGTGCATTTTTGAAGGAGGAACGCCCGATGATCGCCTTGATTGGGGCCCGTCTCTTATTTGCAGCGACGACACAAAATATTCTGATGGCAAGGGCAACCCTGACACTGGAGCTGACTTTGGTGGTGCTCCTGACATTGATCACAAAAACACAAGGGTCCAGAAAGAACTCTCGGATTGGATGAATTGGTTGAAGACCGAAATTGGGTTCAGCGGATGGAGATTTGATTTTGTCCGGGGATATGCTCCAGAGTTCACCAAGTTGTATGTAGCAAACACAAAGCCTAGTTTCTCAGTAGGAGAGTTATGGAATTCCCTTGCTTATGAAAGTGATGGGAAACCCAAGTACAACCAGGACAACCATCGCAATGAGCTTGCTGGATGGATAAAGAATGCAGGAGGAGAGGTTACTGCATTTGATATTACAACTAAAGGGATACTTAACGCTGCTGTCCTAGGCGAACTGGGGAGGTTGAAGGACTCGAAGGGAGGGCCTCCTGGATTGATAGGAATATCGCCACGCAATAGTGTGACTTTCATAGACAATCATGATACAGGTTCCACACAAAAGTTGTGGCCATTTCCATCAGATAAAGTCATTCAGGGATATGCTTACATTCTTACTCATCCAGGGATCCCATCAATATTCTATGATCATTTCTTTGACTGGGGATTGAAAGAGGAGATCTCAAAACTCACTGCGACTAGGTCCAGGAATGGGATCAAGCCCAACAGTGTGGTGCGTATCCTAGCAGCTGATCCAGATCTCTATGTAGCTTCCATAGATGACAAAATCATAATGAAGATTGGTCCAAGATATGAGGTTGGGGACCTTGTACCTCCAACATTCAAAATTGCAACTTCTGGAAAGGACTATTGTGTTTGGGAGAAAACAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

425

Amino Acids

47.17

Weight (kDa)

5.55

Isoelectric Point (pI)

27.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alpha-amylase PF00128 54 - 119 1.8e-08 Alpha amylase, catalytic domain
Alpha-amyl_C2 PF07821 363 - 421 1.1e-22 Alpha-amylase C-terminal beta-sheet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 335
AciI CCGC 2 cut(s) 146, 588
AclWI GGATC 4 cut(s) 1003, 1016, 1103, 1127
AcoI YGGCCR 1 cut(s) 950
AcsI RAATTY 2 cut(s) 4, 685
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 3 cut(s) 125, 722, 1212
AfiI CCNNNNNNNGG 5 cut(s) 85, 418, 482, 579, 1092
AflIII ACRYGT 1 cut(s) 175
AgsI TTSAA 7 cut(s) 94, 136, 389, 568, 850, 1051, 1225
AjnI CCWGG 5 cut(s) 226, 726, 871, 1003, 1085
AjuI GAANNNNNNNTTGG 2 cut(s) 66, 98
AleI CACNNNNGTG 1 cut(s) 345
AluBI AGCT 5 cut(s) 158, 488, 748, 1130, 1151
AluI AGCT 5 cut(s) 158, 488, 748, 1130, 1151
Alw21I GWGCWC 1 cut(s) 505
Alw26I GTCTC 1 cut(s) 432
AlwI GGATC 4 cut(s) 1003, 1016, 1103, 1127
AoxI GGCC 3 cut(s) 421, 866, 950
ApaI GGGCCC 1 cut(s) 425
ApeKI GCWGC 3 cut(s) 438, 821, 1127
ApoI RAATTY 2 cut(s) 4, 685
AspA2I CCTAGG 1 cut(s) 829
AspS9I GGNCC 7 cut(s) 421, 422, 532, 866, 1083, 1184, 1204
AsuC2I CCSGG 1 cut(s) 611
AsuHPI GGTGA 1 cut(s) 622
AvaII GGWCC 4 cut(s) 532, 1083, 1184, 1204
AvrII CCTAGG 1 cut(s) 829
BaeGI GKGCMC 1 cut(s) 425
BalI TGGCCA 1 cut(s) 952
BamHI GGATCC 1 cut(s) 1008
BanII GRGCYC 1 cut(s) 425
BbsI GAAGAC 1 cut(s) 575
Bbv12I GWGCWC 1 cut(s) 505
BbvI GCAGC 3 cut(s) 450, 808, 1139
BccI CCATC 8 cut(s) 114, 455, 585, 701, 744, 750, 967, 1021
BciT130I CCWGG 5 cut(s) 228, 728, 873, 1005, 1087
BciVI GTATCC 4 cut(s) 212, 303, 804, 1130
BclI TGATCA 2 cut(s) 514, 1027
BcnI CCSGG 1 cut(s) 611
BcoDI GTCTC 1 cut(s) 432
BfaI CTAG 6 cut(s) 11, 155, 660, 830, 1080, 1124
BfuI GTATCC 4 cut(s) 212, 303, 804, 1130
BglI GCCNNNNNGGC 1 cut(s) 232
BglII AGATCT 2 cut(s) 1059, 1138
BisI GCNGC 4 cut(s) 147, 439, 822, 1128
BlnI CCTAGG 1 cut(s) 829
BlsI GCNGC 4 cut(s) 148, 440, 823, 1129
Bme1390I CCNGG 6 cut(s) 228, 611, 728, 873, 1005, 1087
Bme18I GGWCC 4 cut(s) 532, 1083, 1184, 1204
BmgT120I GGNCC 7 cut(s) 421, 422, 532, 866, 1083, 1184, 1204
BmiI GGNNCC 6 cut(s) 422, 423, 533, 934, 1010, 1205
BmrFI CCNGG 6 cut(s) 228, 611, 728, 873, 1005, 1087
BmrI ACTGGG 2 cut(s) 848, 1051
BmsI GCATC 1 cut(s) 257
BmuI ACTGGG 2 cut(s) 848, 1051
BpiI GAAGAC 1 cut(s) 575
BplI GAGNNNNNCTC 2 cut(s) 1046, 1078
BpmI CTGGAG 2 cut(s) 504, 606
BpuMI CCSGG 1 cut(s) 611
BsaBI GATNNNNATC 1 cut(s) 1137
BsaJI CCNNGG 3 cut(s) 610, 829, 1004
BsaXI ACNNNNNCTCC 2 cut(s) 765, 795
Bsc4I CCNNNNNNNGG 5 cut(s) 85, 418, 482, 579, 1092
Bse1I ACTGG 4 cut(s) 288, 487, 843, 1046
Bse3DI GCAATG 1 cut(s) 748
Bse8I GATNNNNATC 1 cut(s) 1137
BseBI CCWGG 5 cut(s) 228, 728, 873, 1005, 1087
BseDI CCNNGG 3 cut(s) 610, 829, 1004
BseGI GGATG 5 cut(s) 125, 561, 596, 761, 1000
BseJI GATNNNNATC 1 cut(s) 1137
BseLI CCNNNNNNNGG 5 cut(s) 85, 418, 482, 579, 1092
BseMI GCAATG 1 cut(s) 748
BseMII CTCAG 1 cut(s) 681
BseNI ACTGG 4 cut(s) 288, 487, 843, 1046
BseRI GAGGAG 3 cut(s) 14, 789, 1070
BseSI GKGCMC 1 cut(s) 425
BseXI GCAGC 3 cut(s) 450, 808, 1139
BsgI GTGCAG 1 cut(s) 369
BshFI GGCC 3 cut(s) 423, 868, 952
BsiHKAI GWGCWC 1 cut(s) 505
BsiSI CCGG 1 cut(s) 610
BslFI GGGAC 1 cut(s) 1217
BslI CCNNNNNNNGG 5 cut(s) 85, 418, 482, 579, 1092
BsmAI GTCTC 1 cut(s) 432
BsmBI CGTCTC 1 cut(s) 432
BsmFI GGGAC 1 cut(s) 1217
BsmI GAATGC 1 cut(s) 772
BsnI GGCC 3 cut(s) 423, 868, 952
Bsp120I GGGCCC 1 cut(s) 421
Bsp1286I GDGCHC 2 cut(s) 425, 505
Bsp143I GATC 9 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132, 1138
BspACI CCGC 2 cut(s) 146, 588
BspANI GGCC 3 cut(s) 423, 868, 952
BspCNI CTCAG 1 cut(s) 680
BspHI TCATGA 1 cut(s) 922
BspLI GGNNCC 6 cut(s) 422, 423, 533, 934, 1010, 1205
BspPI GGATC 4 cut(s) 1003, 1016, 1103, 1127
BsrDI GCAATG 1 cut(s) 748
BsrI ACTGG 4 cut(s) 288, 487, 843, 1046
BssECI CCNNGG 3 cut(s) 610, 829, 1004
BssMI GATC 9 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132, 1138
BssT1I CCWWGG 1 cut(s) 829
Bst2UI CCWGG 5 cut(s) 228, 728, 873, 1005, 1087
Bst4CI ACNGT 1 cut(s) 1109
BstC8I GCNNGC 1 cut(s) 750
BstDEI CTNAG 1 cut(s) 667
BstENI CCTNNNNNAGG 1 cut(s) 83
BstF5I GGATG 5 cut(s) 125, 561, 596, 761, 1000
BstKTI GATC 9 cut(s) 244, 409, 517, 1011, 1030, 1062, 1098, 1135, 1141
BstMAI GTCTC 1 cut(s) 432
BstMBI GATC 9 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132, 1138
BstMWI GCNNNNNNNGC 2 cut(s) 155, 232
BstNI CCWGG 5 cut(s) 228, 728, 873, 1005, 1087
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 6 cut(s) 226, 609, 726, 871, 1003, 1085
BstSLI GKGCMC 1 cut(s) 425
BstV1I GCAGC 3 cut(s) 450, 808, 1139
BstV2I GAAGAC 1 cut(s) 575
BstX2I RGATCY 3 cut(s) 1008, 1059, 1138
BstXI CCANNNNNNTGG 2 cut(s) 305, 1111
BstYI RGATCY 3 cut(s) 1008, 1059, 1138
BsuI GTATCC 4 cut(s) 212, 303, 804, 1130
BsuRI GGCC 3 cut(s) 423, 868, 952
BtgZI GCGATG 1 cut(s) 722
BtsCI GGATG 5 cut(s) 125, 561, 596, 761, 1000
BtsI GCAGTG 2 cut(s) 63, 1071
BtsIMutI CAGTG 5 cut(s) 63, 281, 480, 1071, 1114
Cac8I GCNNGC 1 cut(s) 750
CciI TCATGA 1 cut(s) 922
Cfr13I GGNCC 7 cut(s) 421, 422, 532, 866, 1083, 1184, 1204
Csp6I GTAC 3 cut(s) 124, 721, 1211
CspCI CAANNNNNGTGG 2 cut(s) 929, 964
CviAII CATG 5 cut(s) 200, 223, 299, 923, 1272
CviQI GTAC 3 cut(s) 124, 721, 1211
DdeI CTNAG 1 cut(s) 667
DpnI GATC 9 cut(s) 243, 408, 516, 1010, 1029, 1061, 1097, 1134, 1140
DpnII GATC 9 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132, 1138
EaeI YGGCCR 1 cut(s) 950
Eco130I CCWWGG 1 cut(s) 829
Eco24I GRGCYC 1 cut(s) 425
Eco47I GGWCC 4 cut(s) 532, 1083, 1184, 1204
Eco57I CTGAAG 1 cut(s) 147
EcoNI CCTNNNNNAGG 1 cut(s) 83
EcoO109I RGGNCCY 3 cut(s) 421, 866, 1204
EcoRI GAATTC 2 cut(s) 4, 685
EcoRII CCWGG 5 cut(s) 226, 726, 871, 1003, 1085
EcoT14I CCWWGG 1 cut(s) 829
EcoT38I GRGCYC 1 cut(s) 425
ErhI CCWWGG 1 cut(s) 829
Esp3I CGTCTC 1 cut(s) 432
FaeI CATG 5 cut(s) 203, 226, 302, 926, 1275
FalI AAGNNNNNCTT 2 cut(s) 798, 830
FaqI GGGAC 1 cut(s) 1217
FatI CATG 5 cut(s) 199, 222, 298, 922, 1271
FbaI TGATCA 2 cut(s) 514, 1027
Fnu4HI GCNGC 4 cut(s) 147, 439, 822, 1128
FokI GGATG 5 cut(s) 132, 568, 603, 768, 987
FriOI GRGCYC 1 cut(s) 425
Fsp4HI GCNGC 4 cut(s) 147, 439, 822, 1128
FspBI CTAG 6 cut(s) 11, 155, 660, 830, 1080, 1124
GluI GCNGC 4 cut(s) 147, 439, 822, 1128
GsuI CTGGAG 2 cut(s) 504, 606
HaeIII GGCC 3 cut(s) 423, 868, 952
HapII CCGG 1 cut(s) 610
Hin1II CATG 5 cut(s) 203, 226, 302, 926, 1275
HinfI GANTC 2 cut(s) 101, 854
HpaII CCGG 1 cut(s) 610
HphI GGTGA 1 cut(s) 622
Hpy166II GTNNAC 2 cut(s) 19, 630
Hpy188I TCNGA 4 cut(s) 211, 460, 550, 964
Hpy188III TCNNGA 8 cut(s) 133, 165, 506, 535, 623, 923, 1136, 1239
Hpy8I GTNNAC 2 cut(s) 19, 630
Hpy99I CGWCG 1 cut(s) 446
HpyAV CCTTC 6 cut(s) 106, 204, 209, 383, 844, 853
HpyCH4III ACNGT 1 cut(s) 1109
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 6 cut(s) 350, 381, 438, 770, 788, 1232
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 232
HpyF3I CTNAG 1 cut(s) 667
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 5 cut(s) 203, 226, 302, 926, 1275
Ksp22I TGATCA 2 cut(s) 514, 1027
Kzo9I GATC 9 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132, 1138
LmnI GCTCC 3 cut(s) 485, 508, 625
Lsp1109I GCAGC 3 cut(s) 450, 808, 1139
LweI GCATC 1 cut(s) 257
MaeI CTAG 6 cut(s) 11, 155, 660, 830, 1080, 1124
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 781, 904
MalI GATC 9 cut(s) 243, 408, 516, 1010, 1029, 1061, 1097, 1134, 1140
MboI GATC 9 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132, 1138
MboII GAAGA 3 cut(s) 153, 580, 1189
MfeI CAATTG 1 cut(s) 94
MflI RGATCY 3 cut(s) 1008, 1059, 1138
MhlI GDGCHC 2 cut(s) 425, 505
MlsI TGGCCA 1 cut(s) 952
MluCI AATT 8 cut(s) 4, 94, 168, 272, 559, 576, 685, 1227
MluNI TGGCCA 1 cut(s) 952
MlyI GAGTC 1 cut(s) 848
MmeI TCCRAC 1 cut(s) 1241
Mox20I TGGCCA 1 cut(s) 952
MscI TGGCCA 1 cut(s) 952
MseI TTAA 2 cut(s) 275, 816
MslI CAYNNNNRTG 3 cut(s) 303, 345, 741
Msp20I TGGCCA 1 cut(s) 952
MspA1I CMGCKG 2 cut(s) 588, 1130
MspI CCGG 1 cut(s) 610
MspR9I CCNGG 6 cut(s) 228, 611, 728, 873, 1005, 1087
MunI CAATTG 1 cut(s) 94
Mva1269I GAATGC 1 cut(s) 772
MvaI CCWGG 5 cut(s) 228, 728, 873, 1005, 1087
MwoI GCNNNNNNNGC 2 cut(s) 155, 232
NciI CCSGG 1 cut(s) 611
NdeII GATC 9 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132, 1138
NlaIII CATG 5 cut(s) 203, 226, 302, 926, 1275
NlaIV GGNNCC 6 cut(s) 422, 423, 533, 934, 1010, 1205
NmuCI GTSAC 1 cut(s) 904
NspI RCATGY 1 cut(s) 226
OliI CACNNNNGTG 1 cut(s) 345
PagI TCATGA 1 cut(s) 922
PctI GAATGC 1 cut(s) 772
PfeI GAWTC 1 cut(s) 101
PflFI GACNNNGTC 1 cut(s) 1081
PfoI TCCNGGA 2 cut(s) 871, 1085
PkrI GCNGC 4 cut(s) 148, 440, 823, 1129
PleI GAGTC 1 cut(s) 848
PpsI GAGTC 1 cut(s) 848
PpuMI RGGWCCY 1 cut(s) 1204
PsiI TTATAA 1 cut(s) 335
Psp5II RGGWCCY 1 cut(s) 1204
Psp6I CCWGG 5 cut(s) 226, 726, 871, 1003, 1085
PspGI CCWGG 5 cut(s) 226, 726, 871, 1003, 1085
PspN4I GGNNCC 6 cut(s) 422, 423, 533, 934, 1010, 1205
PspOMI GGGCCC 1 cut(s) 421
PspPI GGNCC 7 cut(s) 421, 422, 532, 866, 1083, 1184, 1204
PspPPI RGGWCCY 1 cut(s) 1204
PsuI RGATCY 3 cut(s) 1008, 1059, 1138
PsyI GACNNNGTC 1 cut(s) 1081
PvuII CAGCTG 1 cut(s) 1130
RsaI GTAC 3 cut(s) 125, 722, 1212
RsaNI GTAC 3 cut(s) 124, 721, 1211
RseI CAYNNNNRTG 3 cut(s) 303, 345, 741
SaqAI TTAA 2 cut(s) 275, 816
SatI GCNGC 4 cut(s) 147, 439, 822, 1128
Sau3AI GATC 9 cut(s) 241, 406, 514, 1008, 1027, 1059, 1095, 1132, 1138
Sau96I GGNCC 7 cut(s) 421, 422, 532, 866, 1083, 1184, 1204
SchI GAGTC 1 cut(s) 848
ScrFI CCNGG 6 cut(s) 228, 611, 728, 873, 1005, 1087
SduI GDGCHC 2 cut(s) 425, 505
SfaNI GCATC 1 cut(s) 257
SinI GGWCC 4 cut(s) 532, 1083, 1184, 1204
SmiMI CAYNNNNRTG 3 cut(s) 303, 345, 741
Sse9I AATT 8 cut(s) 4, 94, 168, 272, 559, 576, 685, 1227
SsiI CCGC 2 cut(s) 146, 588
SspI AATATT 2 cut(s) 455, 1020
SspMI CTAG 6 cut(s) 11, 155, 660, 830, 1080, 1124
StyD4I CCNGG 6 cut(s) 226, 609, 726, 871, 1003, 1085
StyI CCWWGG 1 cut(s) 829
TaaI ACNGT 1 cut(s) 1109
TaiI ACGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 857
TaqII GACCGA 1 cut(s) 587
TasI AATT 8 cut(s) 4, 94, 168, 272, 559, 576, 685, 1227
TatI WGTACW 1 cut(s) 720
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 2 cut(s) 275, 816
Tru9I TTAA 2 cut(s) 275, 816
TscAI CASTG 5 cut(s) 70, 288, 487, 1078, 1114
TseFI GTSAC 1 cut(s) 904
TseI GCWGC 3 cut(s) 438, 821, 1127
Tsp45I GTSAC 1 cut(s) 904
TspDTI ATGAA 8 cut(s) 17, 40, 228, 285, 572, 714, 901, 1190
TspRI CASTG 5 cut(s) 70, 288, 487, 1078, 1114
Tth111I GACNNNGTC 1 cut(s) 1081
VpaK11BI GGWCC 4 cut(s) 532, 1083, 1184, 1204
XagI CCTNNNNNAGG 1 cut(s) 83
XapI RAATTY 2 cut(s) 4, 685
XceI RCATGY 1 cut(s) 226
XmaJI CCTAGG 1 cut(s) 829
XspI CTAG 6 cut(s) 11, 155, 660, 830, 1080, 1124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.