divergent subfamily of APPLE domains
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD00G1151300.v1.1 MD05G1231600.v1.1 MD12G1047400.v1.1 |
| rosa_chinensis | RchiOBHm_Chr1g0314381 RchiOBHm_Chr1g0314471 RchiOBHm_Chr1g0314481 RchiOBHm_Chr1g0314501 RchiOBHm_Chr1g0314511 RchiOBHm_Chr1g0314681 RchiOBHm_Chr1g0314691 RchiOBHm_Chr1g0314751 RchiOBHm_Chr1g0314761 RchiOBHm_Chr5g0026081 |
| rosa_multiflora | Rmu_sc0002833.1_g000031 |
| rosa_roxburghii | Rroxscaffold_1G00053240 Rroxscaffold_4G00331900 |
| rosa_rugosa | Rorug01G0001700 |
| rosa_samantha | Rh1AG010700 Rh1AG011900 Rh1AG012600 Rh1BG003500 Rh1BG003800 Rh1DG005900 Rh3BG299400 Rh5BG250700 Rh5CG198700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 150 |
| AflIII | ACRYGT | 1 cut(s) | 48 |
| AgsI | TTSAA | 1 cut(s) | 178 |
| AluBI | AGCT | 1 cut(s) | 57 |
| AluI | AGCT | 1 cut(s) | 57 |
| ApoI | RAATTY | 1 cut(s) | 150 |
| BaeI | ACNNNNGTAYC | 1 cut(s) | 179 |
| BccI | CCATC | 1 cut(s) | 17 |
| BpuEI | CTTGAG | 1 cut(s) | 95 |
| Bsa29I | ATCGAT | 1 cut(s) | 21 |
| BseCI | ATCGAT | 1 cut(s) | 21 |
| BseGI | GGATG | 1 cut(s) | 111 |
| Bsh1285I | CGRYCG | 1 cut(s) | 21 |
| BshVI | ATCGAT | 1 cut(s) | 21 |
| BsiEI | CGRYCG | 1 cut(s) | 21 |
| Bsp143I | GATC | 1 cut(s) | 18 |
| BspDI | ATCGAT | 1 cut(s) | 21 |
| BssMI | GATC | 1 cut(s) | 18 |
| BstF5I | GGATG | 1 cut(s) | 111 |
| BstKTI | GATC | 1 cut(s) | 21 |
| BstMBI | GATC | 1 cut(s) | 18 |
| BstMCI | CGRYCG | 1 cut(s) | 21 |
| BstNSI | RCATGY | 2 cut(s) | 52, 145 |
| Bsu15I | ATCGAT | 1 cut(s) | 21 |
| BsuTUI | ATCGAT | 1 cut(s) | 21 |
| BtsCI | GGATG | 1 cut(s) | 111 |
| ClaI | ATCGAT | 1 cut(s) | 21 |
| CviAII | CATG | 5 cut(s) | 49, 136, 142, 146, 191 |
| CviJI | RGCY | 2 cut(s) | 57, 125 |
| CviKI_1 | RGCY | 2 cut(s) | 57, 125 |
| DpnI | GATC | 1 cut(s) | 20 |
| DpnII | GATC | 1 cut(s) | 18 |
| EcoT22I | ATGCAT | 1 cut(s) | 147 |
| FaeI | CATG | 5 cut(s) | 52, 139, 145, 149, 194 |
| FaiI | YATR | 9 cut(s) | 15, 50, 54, 68, 137, 143, 147, 156, 192 |
| FatI | CATG | 5 cut(s) | 48, 135, 141, 145, 190 |
| FokI | GGATG | 1 cut(s) | 98 |
| Hin1II | CATG | 5 cut(s) | 52, 139, 145, 149, 194 |
| Hpy188I | TCNGA | 1 cut(s) | 46 |
| HpyAV | CCTTC | 2 cut(s) | 79, 157 |
| HpyCH4V | TGCA | 2 cut(s) | 135, 145 |
| Hsp92II | CATG | 5 cut(s) | 52, 139, 145, 149, 194 |
| Kzo9I | GATC | 1 cut(s) | 18 |
| LpnPI | CCDG | 1 cut(s) | 21 |
| MalI | GATC | 1 cut(s) | 20 |
| MboI | GATC | 1 cut(s) | 18 |
| MluCI | AATT | 1 cut(s) | 150 |
| MnlI | CCTC | 1 cut(s) | 94 |
| Mph1103I | ATGCAT | 1 cut(s) | 147 |
| MseI | TTAA | 1 cut(s) | 128 |
| MslI | CAYNNNNRTG | 2 cut(s) | 140, 178 |
| NdeII | GATC | 1 cut(s) | 18 |
| NlaIII | CATG | 5 cut(s) | 52, 139, 145, 149, 194 |
| NsiI | ATGCAT | 1 cut(s) | 147 |
| NspI | RCATGY | 2 cut(s) | 52, 145 |
| PciI | ACATGT | 1 cut(s) | 48 |
| Ple19I | CGATCG | 1 cut(s) | 21 |
| PscI | ACATGT | 1 cut(s) | 48 |
| PvuI | CGATCG | 1 cut(s) | 21 |
| RseI | CAYNNNNRTG | 2 cut(s) | 140, 178 |
| SaqAI | TTAA | 1 cut(s) | 128 |
| Sau3AI | GATC | 1 cut(s) | 18 |
| SetI | ASST | 1 cut(s) | 59 |
| SgeI | CNNG | 9 cut(s) | 20, 46, 61, 86, 144, 148, 154, 158, 180 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 140, 178 |
| SmlI | CTYRAG | 1 cut(s) | 74 |
| SmoI | CTYRAG | 1 cut(s) | 74 |
| Sse9I | AATT | 1 cut(s) | 150 |
| TaqI | TCGA | 2 cut(s) | 21, 185 |
| TasI | AATT | 1 cut(s) | 150 |
| Tru1I | TTAA | 1 cut(s) | 128 |
| Tru9I | TTAA | 1 cut(s) | 128 |
| XapI | RAATTY | 1 cut(s) | 150 |
| XceI | RCATGY | 2 cut(s) | 52, 145 |
| Zsp2I | ATGCAT | 1 cut(s) | 147 |