Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006956

Physical Location & Seq

Genomic Coordinates Reverse (-)

20082340 .. 20083566

Gene Structure 1227 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30567

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTATAAGTTTATTGAAAAAAGAAGCAACAAATCATACCTCCTTTACTTCATTTCTGCAGGAAAACTGAGCCGCGGCCACAAGGAAAATCTGGAATTACGTGACTTGACTACTGTTGTTAATGAAACCTGTAACTTCTCAAACGACAACAAACTAGGAGAAGGTGGCTTTGGATCTGTCTTTAAGCACAAGAATCTAGTGAAGCTTCTAGGGTGCTGCTTTCAACAAGATGAAATGATGCTGATCTACAAATGCATGCCCGACAAAAGCTTGGACTTCTTTTTATTTTCAGTTTTATCACCGAGGAAGTTTATATTTGGTTTTATTGGTCCATATGGTTACATGTCCCCAGAATACACAATTGATGGTTTCTTCTCGATAAAATCCGATGTCTACAACTATGGAGTTTTGGTGCTAGAGATACCGTTCATAGAAGGCAGGTCCATTGAATTTCTAGATCCATTGGTGGAGGACTCCAGCACTCTACATGAAGTTGTGCAATCGATTCATGTAGGTCTTTTATGTGTGCAACAAAAACCACAAGATAGGCCAAGTATGCCAGCTGCTGTTCTAATATTGAGTGGTGAAGGTGCATCGCCTCAACCTCAGAAGCCTGGTTTTTTCAGTGAAAGGAATCTGACAGAACCTGAAGATTCTACAGATGAGGCTACAGAATGTTCAGCTAATGAACTCACTGTTACACAAGTGGGGGCTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

239

Amino Acids

26.88

Weight (kDa)

5.1

Isoelectric Point (pI)

55.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3403	PF11883	200 - 239	4.5e-06	Domain of unknown function (DUF3403)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006956)

Species	Orthologous Gene IDs
malus_domestica	MD00G1151300.v1.1 MD05G1231600.v1.1 MD12G1047400.v1.1
rosa_chinensis	RchiOBHm_Chr1g0314381 RchiOBHm_Chr1g0314471 RchiOBHm_Chr1g0314481 RchiOBHm_Chr1g0314501 RchiOBHm_Chr1g0314511 RchiOBHm_Chr1g0314681 RchiOBHm_Chr1g0314691 RchiOBHm_Chr1g0314751 RchiOBHm_Chr1g0314761 RchiOBHm_Chr5g0026081
rosa_multiflora	Rmu_sc0002833.1_g000031
rosa_roxburghii	Rroxscaffold_1G00053240 Rroxscaffold_4G00331900
rosa_rugosa	Rorug01G0001700
rosa_samantha	Rh1AG010700 Rh1AG011900 Rh1AG012600 Rh1BG003500 Rh1BG003800 Rh1DG005900 Rh3BG299400 Rh5BG250700 Rh5CG198700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	429
AccI	GTMKAC	1 cut(s)	393
AccII	CGCG	1 cut(s)	75
AciI	CCGC	2 cut(s)	73, 75
AclWI	GGATC	2 cut(s)	181, 452
AcoI	YGGCCR	1 cut(s)	76
AcsI	RAATTY	1 cut(s)	449
AcuI	CTGAAG	1 cut(s)	669
AflIII	ACRYGT	1 cut(s)	342
AgsI	TTSAA	3 cut(s)	17, 224, 449
AjnI	CCWGG	1 cut(s)	613
AjuI	GAANNNNNNNTTGG	2 cut(s)	153, 185
AluBI	AGCT	4 cut(s)	205, 270, 563, 683
AluI	AGCT	4 cut(s)	205, 270, 563, 683
AlwI	GGATC	2 cut(s)	181, 452
AlwNI	CAGNNNCTG	2 cut(s)	566, 647
AoxI	GGCC	2 cut(s)	76, 548
ApeKI	GCWGC	2 cut(s)	216, 563
ApoI	RAATTY	1 cut(s)	449
AspS9I	GGNCC	2 cut(s)	329, 441
AsuHPI	GGTGA	2 cut(s)	291, 596
AvaII	GGWCC	2 cut(s)	329, 441
BanII	GRGCYC	1 cut(s)	715
BbvI	GCAGC	2 cut(s)	203, 550
BccI	CCATC	1 cut(s)	359
BciT130I	CCWGG	1 cut(s)	615
BfaI	CTAG	5 cut(s)	155, 197, 209, 416, 455
BfmI	CTRYAG	3 cut(s)	57, 657, 669
BfuAI	ACCTGC	1 cut(s)	429
BisI	GCNGC	4 cut(s)	73, 76, 217, 564
BlsI	GCNGC	4 cut(s)	74, 77, 218, 565
Bme1390I	CCNGG	1 cut(s)	615
Bme18I	GGWCC	2 cut(s)	329, 441
BmgT120I	GGNCC	2 cut(s)	329, 441
BmrFI	CCNGG	1 cut(s)	615
BmsI	GCATC	2 cut(s)	228, 602
BpmI	CTGGAG	1 cut(s)	460
Bsa29I	ATCGAT	1 cut(s)	503
BsaAI	YACGTR	1 cut(s)	101
BsaBI	GATNNNNATC	1 cut(s)	242
BsaJI	CCNNGG	2 cut(s)	73, 302
BsaXI	ACNNNNNCTCC	2 cut(s)	396, 426
Bse8I	GATNNNNATC	1 cut(s)	242
BseBI	CCWGG	1 cut(s)	615
BseCI	ATCGAT	1 cut(s)	503
BseDI	CCNNGG	2 cut(s)	73, 302
BseJI	GATNNNNATC	1 cut(s)	242
BseMII	CTCAG	2 cut(s)	59, 620
BseXI	GCAGC	2 cut(s)	203, 550
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	78, 550
BshVI	ATCGAT	1 cut(s)	503
BslFI	GGGAC	1 cut(s)	331
BsmFI	GGGAC	1 cut(s)	331
BsnI	GGCC	2 cut(s)	78, 550
Bsp1286I	GDGCHC	1 cut(s)	715
Bsp143I	GATC	3 cut(s)	173, 243, 457
BspACI	CCGC	2 cut(s)	73, 75
BspANI	GGCC	2 cut(s)	78, 550
BspCNI	CTCAG	2 cut(s)	60, 619
BspDI	ATCGAT	1 cut(s)	503
BspFNI	CGCG	1 cut(s)	75
BspMAI	CTGCAG	1 cut(s)	61
BspMI	ACCTGC	1 cut(s)	429
BspPI	GGATC	2 cut(s)	181, 452
BssECI	CCNNGG	2 cut(s)	73, 302
BssMI	GATC	3 cut(s)	173, 243, 457
Bst2UI	CCWGG	1 cut(s)	615
Bst4CI	ACNGT	3 cut(s)	115, 426, 697
BstBAI	YACGTR	1 cut(s)	101
BstC8I	GCNNGC	2 cut(s)	257, 561
BstDEI	CTNAG	2 cut(s)	68, 606
BstDSI	CCRYGG	1 cut(s)	73
BstFNI	CGCG	1 cut(s)	75
BstKTI	GATC	3 cut(s)	176, 246, 460
BstMBI	GATC	3 cut(s)	173, 243, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	556
BstNI	CCWGG	1 cut(s)	615
BstNSI	RCATGY	2 cut(s)	259, 346
BstSCI	CCNGG	1 cut(s)	613
BstSFI	CTRYAG	3 cut(s)	57, 657, 669
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	2 cut(s)	203, 550
BstX2I	RGATCY	2 cut(s)	173, 457
BstYI	RGATCY	2 cut(s)	173, 457
Bsu15I	ATCGAT	1 cut(s)	503
BsuRI	GGCC	2 cut(s)	78, 550
BsuTUI	ATCGAT	1 cut(s)	503
BtgI	CCRYGG	1 cut(s)	73
BtgZI	GCGATG	1 cut(s)	579
BtsIMutI	CAGTG	2 cut(s)	631, 693
BveI	ACCTGC	1 cut(s)	429
Cac8I	GCNNGC	2 cut(s)	257, 561
CaiI	CAGNNNCTG	2 cut(s)	566, 647
Cfr13I	GGNCC	2 cut(s)	329, 441
Cfr42I	CCGCGG	1 cut(s)	76
ClaI	ATCGAT	1 cut(s)	503
CviAII	CATG	4 cut(s)	256, 343, 488, 509
DdeI	CTNAG	2 cut(s)	68, 606
DpnI	GATC	3 cut(s)	175, 245, 459
DpnII	GATC	3 cut(s)	173, 243, 457
EaeI	YGGCCR	1 cut(s)	76
Eco24I	GRGCYC	1 cut(s)	715
Eco47I	GGWCC	2 cut(s)	329, 441
Eco57I	CTGAAG	1 cut(s)	669
EcoRII	CCWGG	1 cut(s)	613
EcoT22I	ATGCAT	1 cut(s)	257
EcoT38I	GRGCYC	1 cut(s)	715
FaeI	CATG	4 cut(s)	259, 346, 491, 512
FaqI	GGGAC	1 cut(s)	331
FatI	CATG	4 cut(s)	255, 342, 487, 508
FauNDI	CATATG	1 cut(s)	334
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	4 cut(s)	73, 76, 217, 564
FriOI	GRGCYC	1 cut(s)	715
Fsp4HI	GCNGC	4 cut(s)	73, 76, 217, 564
FspBI	CTAG	5 cut(s)	155, 197, 209, 416, 455
GluI	GCNGC	4 cut(s)	73, 76, 217, 564
GsuI	CTGGAG	1 cut(s)	460
HaeIII	GGCC	2 cut(s)	78, 550
Hin1II	CATG	4 cut(s)	259, 346, 491, 512
HindIII	AAGCTT	2 cut(s)	203, 268
HinfI	GANTC	5 cut(s)	193, 473, 505, 634, 653
HphI	GGTGA	2 cut(s)	291, 596
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	3 cut(s)	388, 609, 639
Hpy188III	TCNNGA	3 cut(s)	92, 376, 455
Hpy8I	GTNNAC	1 cut(s)	394
HpyAV	CCTTC	3 cut(s)	155, 428, 581
HpyCH4III	ACNGT	3 cut(s)	115, 426, 697
HpyCH4IV	ACGT	1 cut(s)	100
HpyCH4V	TGCA	5 cut(s)	59, 255, 499, 529, 593
HpyF10VI	GCNNNNNNNGC	1 cut(s)	556
HpyF3I	CTNAG	2 cut(s)	68, 606
HpySE526I	ACGT	1 cut(s)	100
Hsp92II	CATG	4 cut(s)	259, 346, 491, 512
KspI	CCGCGG	1 cut(s)	76
Kzo9I	GATC	3 cut(s)	173, 243, 457
Lsp1109I	GCAGC	2 cut(s)	203, 550
LweI	GCATC	2 cut(s)	228, 602
MaeI	CTAG	5 cut(s)	155, 197, 209, 416, 455
MaeII	ACGT	1 cut(s)	100
MaeIII	GTNAC	4 cut(s)	101, 131, 338, 697
MalI	GATC	3 cut(s)	175, 245, 459
MboI	GATC	3 cut(s)	173, 243, 457
MboII	GAAGA	2 cut(s)	364, 662
MfeI	CAATTG	1 cut(s)	360
MflI	RGATCY	2 cut(s)	173, 457
MhlI	GDGCHC	1 cut(s)	715
MluCI	AATT	3 cut(s)	95, 360, 449
MlyI	GAGTC	1 cut(s)	467
MnlI	CCTC	6 cut(s)	50, 297, 463, 609, 615, 658
Mph1103I	ATGCAT	1 cut(s)	257
MseI	TTAA	2 cut(s)	120, 183
MspA1I	CMGCKG	2 cut(s)	75, 563
MspR9I	CCNGG	1 cut(s)	615
MunI	CAATTG	1 cut(s)	360
MvaI	CCWGG	1 cut(s)	615
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	556
NdeI	CATATG	1 cut(s)	334
NdeII	GATC	3 cut(s)	173, 243, 457
NlaIII	CATG	4 cut(s)	259, 346, 491, 512
NmuCI	GTSAC	1 cut(s)	101
NsiI	ATGCAT	1 cut(s)	257
NspI	RCATGY	2 cut(s)	259, 346
PaeI	GCATGC	1 cut(s)	259
PciI	ACATGT	1 cut(s)	342
PfeI	GAWTC	4 cut(s)	193, 505, 634, 653
PkrI	GCNGC	4 cut(s)	74, 77, 218, 565
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
Ppu21I	YACGTR	1 cut(s)	101
PscI	ACATGT	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	613
PspGI	CCWGG	1 cut(s)	613
PspPI	GGNCC	2 cut(s)	329, 441
PstI	CTGCAG	1 cut(s)	61
PstNI	CAGNNNCTG	2 cut(s)	566, 647
PsuI	RGATCY	2 cut(s)	173, 457
PvuII	CAGCTG	1 cut(s)	563
SacII	CCGCGG	1 cut(s)	76
SaqAI	TTAA	2 cut(s)	120, 183
SatI	GCNGC	4 cut(s)	73, 76, 217, 564
Sau3AI	GATC	3 cut(s)	173, 243, 457
Sau96I	GGNCC	2 cut(s)	329, 441
SchI	GAGTC	1 cut(s)	467
ScrFI	CCNGG	1 cut(s)	615
SduI	GDGCHC	1 cut(s)	715
SfaNI	GCATC	2 cut(s)	228, 602
SfcI	CTRYAG	3 cut(s)	57, 657, 669
Sfr303I	CCGCGG	1 cut(s)	76
SgrBI	CCGCGG	1 cut(s)	76
SinI	GGWCC	2 cut(s)	329, 441
SphI	GCATGC	1 cut(s)	259
Sse9I	AATT	3 cut(s)	95, 360, 449
SsiI	CCGC	2 cut(s)	73, 75
SspI	AATATT	1 cut(s)	576
SspMI	CTAG	5 cut(s)	155, 197, 209, 416, 455
StyD4I	CCNGG	1 cut(s)	613
TaaI	ACNGT	3 cut(s)	115, 426, 697
TaiI	ACGT	1 cut(s)	103
TaqI	TCGA	3 cut(s)	377, 503, 715
TasI	AATT	3 cut(s)	95, 360, 449
TauI	GCSGC	2 cut(s)	75, 78
TfiI	GAWTC	4 cut(s)	193, 505, 634, 653
Tru1I	TTAA	2 cut(s)	120, 183
Tru9I	TTAA	2 cut(s)	120, 183
TscAI	CASTG	2 cut(s)	631, 700
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	2 cut(s)	216, 563
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	7 cut(s)	40, 138, 246, 418, 497, 504, 702
TspRI	CASTG	2 cut(s)	631, 700
VpaK11BI	GGWCC	2 cut(s)	329, 441
XapI	RAATTY	1 cut(s)	449
XbaI	TCTAGA	1 cut(s)	454
XceI	RCATGY	2 cut(s)	259, 346
XmiI	GTMKAC	1 cut(s)	393
XspI	CTAG	5 cut(s)	155, 197, 209, 416, 455
Zsp2I	ATGCAT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.