Rh1BG003800

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0006956
Physical Location & Seq
Forward (+)
592192 .. 594040
1849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG003800.1

Sequence Viewer

Length: 831 bp
ATGTTGTGTATGAAGAACTGCTCCTGTACAGCTTATGCAAATTCCAATATCAGGGAAGGAAGAAGTGGGTGCTTGCTGTGGTTAGGTGATCTGATTGACTTAAGAAATTTCACTGAGAAAGAGAATGGGCAAGATATCCATATAAGATTAGCTGCATCAGAGCAAGATAATGAAGAGACTAGTACCATAATCAATGCTAAACCTGCTAAATCCAATGTGAAGAAAGTGAGAATCATAGTTAGCACTCTTGTTTTATCTACTGGGCGTAGCTCTGCTCTTTTATGTTTGGAAGAAAGATGGAAAACTGAGCCGCAGCCACAAGGAAAATCTGGAATTACCATTGAGAAGGTGGTTTCAGATCTGTCTTTAAGTGGTTACGTGTCCCCAGAATACACAATTGATGGGTTCTACTCAATAAAATCCAATGTCTACAGCTATGGAGTTTTGGTGTTAGAGATAGAGAGTGGGAAGAGAAACCGAGGATTCTCACATCCAGGCCACAATCGCAACCTTTTGGGACATGTGAGCTACAACTGTCAACTTGAAAGAAATGTATTGCTGCTTGATTCTTCTTCTTCTTCTTCTATATATTCAGTAAAAGTGAATGTTTTCATCTTTCAAGCATGGAAGCTGTTCATAGAAGGCAGGTCCATCGAACTTCTTGATCCATCGGTAGAGGACTCTATCACTCTACATGAAGTTGTGCGACCGATTCATGTAGCTCTTTTATGTGTGCAACAAAAACCACAAGATGGGCCAAGTATGCCAGCTGCTGTTCTAATATTGAGTGGTGAAGGTGCATTGCCTCAACCTCAGAAGCCTGGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

276

Amino Acids

30.43

Weight (kDa)

6.6

Isoelectric Point (pI)

61.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 3 - 34 9.8e-11 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 211, 636
AccB7I CCANNNNNTGG 1 cut(s) 752
AccI GTMKAC 1 cut(s) 429
AciI CCGC 1 cut(s) 311
AclWI GGATC 1 cut(s) 659
AcsI RAATTY 2 cut(s) 40, 106
AfaI GTAC 2 cut(s) 28, 184
AfiI CCNNNNNNNGG 2 cut(s) 51, 752
AflII CTTAAG 1 cut(s) 100
AflIII ACRYGT 2 cut(s) 378, 520
AgsI TTSAA 2 cut(s) 545, 620
AhlI ACTAGT 1 cut(s) 179
AjnI CCWGG 2 cut(s) 493, 820
AluBI AGCT 8 cut(s) 32, 152, 270, 435, 528, 631, 722, 770
AluI AGCT 8 cut(s) 32, 152, 270, 435, 528, 631, 722, 770
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 1 cut(s) 659
AlwNI CAGNNNCTG 1 cut(s) 773
AoxI GGCC 2 cut(s) 496, 755
ApeKI GCWGC 4 cut(s) 152, 313, 559, 770
ApoI RAATTY 2 cut(s) 40, 106
Asp700I GAANNNNTTC 2 cut(s) 608, 632
AspS9I GGNCC 2 cut(s) 648, 755
AsuHPI GGTGA 2 cut(s) 98, 803
AvaII GGWCC 1 cut(s) 648
BbvI GCAGC 4 cut(s) 139, 325, 546, 757
BccI CCATC 5 cut(s) 291, 395, 659, 676, 746
BcgI CGANNNNNNTGC 2 cut(s) 634, 668
BciT130I CCWGG 2 cut(s) 495, 822
BcoDI GTCTC 1 cut(s) 170
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 1 cut(s) 180
BfmI CTRYAG 1 cut(s) 430
BfrI CTTAAG 1 cut(s) 100
BfuAI ACCTGC 2 cut(s) 211, 636
BglII AGATCT 1 cut(s) 358
BisI GCNGC 5 cut(s) 153, 311, 314, 560, 771
BlsI GCNGC 5 cut(s) 154, 312, 315, 561, 772
Bme1390I CCNGG 2 cut(s) 495, 822
Bme18I GGWCC 1 cut(s) 648
BmgT120I GGNCC 2 cut(s) 648, 755
BmrFI CCNGG 2 cut(s) 495, 822
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 1 cut(s) 164
BmuI ACTGGG 1 cut(s) 270
BsaAI YACGTR 1 cut(s) 379
BsaJI CCNNGG 1 cut(s) 478
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 752
Bse1I ACTGG 1 cut(s) 265
Bse3DI GCAATG 1 cut(s) 800
BseBI CCWGG 2 cut(s) 495, 822
BseDI CCNNGG 1 cut(s) 478
BseGI GGATG 1 cut(s) 490
BseLI CCNNNNNNNGG 2 cut(s) 51, 752
BseMI GCAATG 1 cut(s) 800
BseMII CTCAG 3 cut(s) 105, 297, 827
BseNI ACTGG 1 cut(s) 265
BseXI GCAGC 4 cut(s) 139, 325, 546, 757
Bsh1285I CGRYCG 1 cut(s) 710
BshFI GGCC 2 cut(s) 498, 757
BsiEI CGRYCG 1 cut(s) 710
BslFI GGGAC 2 cut(s) 367, 531
BslI CCNNNNNNNGG 2 cut(s) 51, 752
BsmAI GTCTC 1 cut(s) 170
BsmFI GGGAC 2 cut(s) 367, 531
BsnI GGCC 2 cut(s) 498, 757
Bsp1407I TGTACA 1 cut(s) 26
Bsp143I GATC 3 cut(s) 88, 358, 664
BspACI CCGC 1 cut(s) 311
BspANI GGCC 2 cut(s) 498, 757
BspCNI CTCAG 3 cut(s) 106, 298, 826
BspMI ACCTGC 2 cut(s) 211, 636
BspPI GGATC 1 cut(s) 659
BspTI CTTAAG 1 cut(s) 100
BsrDI GCAATG 1 cut(s) 800
BsrGI TGTACA 1 cut(s) 26
BsrI ACTGG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 478
BssMI GATC 3 cut(s) 88, 358, 664
Bst2UI CCWGG 2 cut(s) 495, 822
Bst4CI ACNGT 1 cut(s) 536
Bst6I CTCTTC 2 cut(s) 168, 464
BstAFI CTTAAG 1 cut(s) 100
BstAUI TGTACA 1 cut(s) 26
BstBAI YACGTR 1 cut(s) 379
BstC8I GCNNGC 2 cut(s) 74, 768
BstDEI CTNAG 3 cut(s) 114, 306, 813
BstF5I GGATG 1 cut(s) 490
BstKTI GATC 3 cut(s) 91, 361, 667
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 3 cut(s) 88, 358, 664
BstMCI CGRYCG 1 cut(s) 710
BstMWI GCNNNNNNNGC 3 cut(s) 203, 504, 763
BstNI CCWGG 2 cut(s) 495, 822
BstNSI RCATGY 1 cut(s) 524
BstSCI CCNGG 2 cut(s) 493, 820
BstSFI CTRYAG 1 cut(s) 430
BstV1I GCAGC 4 cut(s) 139, 325, 546, 757
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 2 cut(s) 498, 757
BtsCI GGATG 1 cut(s) 490
BtsIMutI CAGTG 1 cut(s) 111
BveI ACCTGC 2 cut(s) 211, 636
Cac8I GCNNGC 2 cut(s) 74, 768
CaiI CAGNNNCTG 1 cut(s) 773
Cfr13I GGNCC 2 cut(s) 648, 755
Csp6I GTAC 2 cut(s) 27, 183
CviAII CATG 4 cut(s) 521, 624, 695, 716
CviQI GTAC 2 cut(s) 27, 183
DdeI CTNAG 3 cut(s) 114, 306, 813
DpnI GATC 3 cut(s) 90, 360, 666
DpnII GATC 3 cut(s) 88, 358, 664
Eam1104I CTCTTC 2 cut(s) 168, 464
EarI CTCTTC 2 cut(s) 168, 464
Eco32I GATATC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 648
EcoRII CCWGG 2 cut(s) 493, 820
EcoRV GATATC 1 cut(s) 136
FaeI CATG 4 cut(s) 524, 627, 698, 719
FaqI GGGAC 2 cut(s) 367, 531
FatI CATG 4 cut(s) 520, 623, 694, 715
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 5 cut(s) 153, 311, 314, 560, 771
FokI GGATG 1 cut(s) 477
Fsp4HI GCNGC 5 cut(s) 153, 311, 314, 560, 771
FspBI CTAG 1 cut(s) 180
GluI GCNGC 5 cut(s) 153, 311, 314, 560, 771
HaeIII GGCC 2 cut(s) 498, 757
Hin1II CATG 4 cut(s) 524, 627, 698, 719
HincII GTYRAC 1 cut(s) 539
HindII GTYRAC 1 cut(s) 539
HinfI GANTC 6 cut(s) 231, 483, 566, 680, 712, 825
HphI GGTGA 2 cut(s) 98, 803
Hpy166II GTNNAC 2 cut(s) 430, 539
Hpy188I TCNGA 5 cut(s) 93, 160, 358, 816, 830
Hpy188III TCNNGA 2 cut(s) 330, 662
Hpy8I GTNNAC 2 cut(s) 430, 539
HpyAV CCTTC 4 cut(s) 50, 340, 635, 788
HpyCH4III ACNGT 1 cut(s) 536
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 4 cut(s) 38, 155, 736, 800
HpyF10VI GCNNNNNNNGC 3 cut(s) 203, 504, 763
HpyF3I CTNAG 3 cut(s) 114, 306, 813
HpySE526I ACGT 1 cut(s) 378
Hsp92II CATG 4 cut(s) 524, 627, 698, 719
Kzo9I GATC 3 cut(s) 88, 358, 664
LmnI GCTCC 1 cut(s) 26
Lsp1109I GCAGC 4 cut(s) 139, 325, 546, 757
LweI GCATC 1 cut(s) 164
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 1 cut(s) 374
MalI GATC 3 cut(s) 90, 360, 666
MboI GATC 3 cut(s) 88, 358, 664
MfeI CAATTG 1 cut(s) 396
MflI RGATCY 1 cut(s) 358
MluCI AATT 4 cut(s) 40, 106, 333, 396
MlyI GAGTC 1 cut(s) 674
MnlI CCTC 4 cut(s) 473, 670, 816, 822
MroXI GAANNNNTTC 2 cut(s) 608, 632
MseI TTAA 2 cut(s) 101, 368
MspA1I CMGCKG 1 cut(s) 770
MspCI CTTAAG 1 cut(s) 100
MspR9I CCNGG 2 cut(s) 495, 822
MunI CAATTG 1 cut(s) 396
MvaI CCWGG 2 cut(s) 495, 822
MwoI GCNNNNNNNGC 3 cut(s) 203, 504, 763
NdeII GATC 3 cut(s) 88, 358, 664
NlaIII CATG 4 cut(s) 524, 627, 698, 719
NspI RCATGY 1 cut(s) 524
PciI ACATGT 1 cut(s) 520
PdmI GAANNNNTTC 2 cut(s) 608, 632
PfeI GAWTC 5 cut(s) 231, 483, 566, 712, 825
PflMI CCANNNNNTGG 1 cut(s) 752
PkrI GCNGC 5 cut(s) 154, 312, 315, 561, 772
PleI GAGTC 1 cut(s) 674
PpsI GAGTC 1 cut(s) 674
Ppu21I YACGTR 1 cut(s) 379
PscI ACATGT 1 cut(s) 520
Psp6I CCWGG 2 cut(s) 493, 820
PspGI CCWGG 2 cut(s) 493, 820
PspPI GGNCC 2 cut(s) 648, 755
PstNI CAGNNNCTG 1 cut(s) 773
PsuI RGATCY 1 cut(s) 358
PvuII CAGCTG 1 cut(s) 770
RsaI GTAC 2 cut(s) 28, 184
RsaNI GTAC 2 cut(s) 27, 183
SaqAI TTAA 2 cut(s) 101, 368
SatI GCNGC 5 cut(s) 153, 311, 314, 560, 771
Sau3AI GATC 3 cut(s) 88, 358, 664
Sau96I GGNCC 2 cut(s) 648, 755
SchI GAGTC 1 cut(s) 674
ScrFI CCNGG 2 cut(s) 495, 822
SfaNI GCATC 1 cut(s) 164
SfcI CTRYAG 1 cut(s) 430
SinI GGWCC 1 cut(s) 648
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
SpeI ACTAGT 1 cut(s) 179
Sse9I AATT 4 cut(s) 40, 106, 333, 396
SsiI CCGC 1 cut(s) 311
SspI AATATT 1 cut(s) 783
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 493, 820
TaaI ACNGT 1 cut(s) 536
TaiI ACGT 1 cut(s) 381
TaqI TCGA 1 cut(s) 654
TaqII GACCGA 1 cut(s) 724
TasI AATT 4 cut(s) 40, 106, 333, 396
TatI WGTACW 1 cut(s) 26
TauI GCSGC 1 cut(s) 313
TfiI GAWTC 5 cut(s) 231, 483, 566, 712, 825
Tru1I TTAA 2 cut(s) 101, 368
Tru9I TTAA 2 cut(s) 101, 368
TscAI CASTG 1 cut(s) 118
TseI GCWGC 4 cut(s) 152, 313, 559, 770
TspDTI ATGAA 6 cut(s) 26, 186, 601, 625, 704, 711
TspRI CASTG 1 cut(s) 118
Van91I CCANNNNNTGG 1 cut(s) 752
Vha464I CTTAAG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 648
XapI RAATTY 2 cut(s) 40, 106
XceI RCATGY 1 cut(s) 524
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 429
XmnI GAANNNNTTC 2 cut(s) 608, 632
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.