Rh1AG012600

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0006956
Physical Location & Seq
Forward (+)
2098228 .. 2106063
7836 bp
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UTR
Exon/CDS
Intron
Rh1AG012600.1

Sequence Viewer

Length: 255 bp
ATGTTGTGTATGAAGAACTGCTCCTGTACAGATTATGCAAATTCTAATATCAGGGAAGGAAGAAGTGGGTGCTTGCTGTGGTTAGGTGATCTGATTGACGTAAGAAATTTAACTGAGAAAGAGAATGGGCAAGATATCCATATAAGATTTGCTGCATCAGAACAAGATCTCATCAGAAGAGAGATGTCCGGTATGGGAGACAGGTATGTGGGCACAAGACGGAGTGAGGATCCGAAGGCTGGAGAAGCAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

84

Amino Acids

9.48

Weight (kDa)

5.32

Isoelectric Point (pI)

82.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 3 - 34 3.2e-10 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 224, 237
AcsI RAATTY 2 cut(s) 40, 106
AfaI GTAC 1 cut(s) 28
AfiI CCNNNNNNNGG 1 cut(s) 239
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 2 cut(s) 224, 237
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 2 cut(s) 40, 106
AsuHPI GGTGA 1 cut(s) 98
BaeGI GKGCMC 1 cut(s) 215
BamHI GGATCC 1 cut(s) 229
BbvI GCAGC 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 192
BglII AGATCT 1 cut(s) 166
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 231
BmsI GCATC 1 cut(s) 164
BsaWI WCCGGW 1 cut(s) 188
Bsc4I CCNNNNNNNGG 1 cut(s) 239
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMII CTCAG 1 cut(s) 105
BseSI GKGCMC 1 cut(s) 215
BseXI GCAGC 1 cut(s) 139
BsiSI CCGG 1 cut(s) 189
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 215
Bsp1407I TGTACA 1 cut(s) 26
Bsp143I GATC 3 cut(s) 88, 166, 229
BspCNI CTCAG 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 231
BspPI GGATC 2 cut(s) 224, 237
BsrGI TGTACA 1 cut(s) 26
BssMI GATC 3 cut(s) 88, 166, 229
Bst6I CTCTTC 1 cut(s) 172
BstAUI TGTACA 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 114
BstKTI GATC 3 cut(s) 91, 169, 232
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 3 cut(s) 88, 166, 229
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstSLI GKGCMC 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 139
BstX2I RGATCY 2 cut(s) 166, 229
BstYI RGATCY 2 cut(s) 166, 229
Cac8I GCNNGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 27
CviJI RGCY 1 cut(s) 239
CviKI_1 RGCY 1 cut(s) 239
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 1 cut(s) 114
DpnI GATC 3 cut(s) 90, 168, 231
DpnII GATC 3 cut(s) 88, 166, 229
Eam1104I CTCTTC 1 cut(s) 172
EarI CTCTTC 1 cut(s) 172
Eco32I GATATC 1 cut(s) 136
EcoRV GATATC 1 cut(s) 136
FaiI YATR 6 cut(s) 11, 36, 141, 143, 194, 207
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 153
HapII CCGG 1 cut(s) 189
HpaII CCGG 1 cut(s) 189
HphI GGTGA 1 cut(s) 98
Hpy188I TCNGA 4 cut(s) 93, 160, 176, 234
HpyAV CCTTC 2 cut(s) 50, 229
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 38, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 99
Kzo9I GATC 3 cut(s) 88, 166, 229
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 5 cut(s) 37, 37, 187, 202, 225
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 164
MaeII ACGT 1 cut(s) 99
MalI GATC 3 cut(s) 90, 168, 231
MboI GATC 3 cut(s) 88, 166, 229
MboII GAAGA 3 cut(s) 25, 72, 189
MflI RGATCY 2 cut(s) 166, 229
MhlI GDGCHC 1 cut(s) 215
MluCI AATT 3 cut(s) 40, 106, 250
MnlI CCTC 1 cut(s) 220
MseI TTAA 1 cut(s) 110
MspI CCGG 1 cut(s) 189
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeII GATC 3 cut(s) 88, 166, 229
NlaIV GGNNCC 1 cut(s) 231
PkrI GCNGC 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 231
PsuI RGATCY 2 cut(s) 166, 229
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 3 cut(s) 88, 166, 229
SduI GDGCHC 1 cut(s) 215
SetI ASST 3 cut(s) 88, 102, 206
SfaNI GCATC 1 cut(s) 164
SgeI CNNG 8 cut(s) 36, 64, 85, 143, 176, 201, 214, 228
Sse9I AATT 3 cut(s) 40, 106, 250
TaiI ACGT 1 cut(s) 102
TasI AATT 3 cut(s) 40, 106, 250
TatI WGTACW 1 cut(s) 26
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 1 cut(s) 26
TspGWI ACGGA 1 cut(s) 235
XapI RAATTY 2 cut(s) 40, 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.