Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006956

Physical Location & Seq

Genomic Coordinates Forward (+)

30871466 .. 30881641

Gene Structure 10176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG250700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAACATCAAGGAATGCAAAGCCAAATGTTTGAACAACTGTTCCTGTATGGCTTATACAAGCTCGGACATCAGAGCAGGAGGTTCTGGCTGCGCCATTTGGTTTGGTGATCTACTAGATATCAGAAAGTTTCCGGATGCTGGCCAGGATCTATACATTCGAATGTCGGCTTCAGAGATAGGTATGATTTCTGAAGAACCATATCTACGTGGTTTAGAACGCTGCAAAACCAATCTTGTTGGTCGAGTCATGCTCCCACCAAAAGCAACCCCTCTTAAGTCCCATGAATTGGTGTCGCAGCTTAAGTCTTGCTGGCCCGCCCTAAGCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase_Tyr S_locus_glycop

Protein Analysis

110

Amino Acids

12.15

Weight (kDa)

8.5

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAN_2	PF08276	1 - 41	6.3e-15	PAN-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006956)

Species	Orthologous Gene IDs
malus_domestica	MD00G1151300.v1.1 MD05G1231600.v1.1 MD12G1047400.v1.1
rosa_chinensis	RchiOBHm_Chr1g0314381 RchiOBHm_Chr1g0314471 RchiOBHm_Chr1g0314481 RchiOBHm_Chr1g0314501 RchiOBHm_Chr1g0314511 RchiOBHm_Chr1g0314681 RchiOBHm_Chr1g0314691 RchiOBHm_Chr1g0314751 RchiOBHm_Chr1g0314761 RchiOBHm_Chr5g0026081
rosa_multiflora	Rmu_sc0002833.1_g000031
rosa_roxburghii	Rroxscaffold_1G00053240 Rroxscaffold_4G00331900
rosa_rugosa	Rorug01G0001700
rosa_samantha	Rh1AG010700 Rh1AG011900 Rh1AG012600 Rh1BG003500 Rh1BG003800 Rh1DG005900 Rh3BG299400 Rh5BG250700 Rh5CG198700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	289
AccIII	TCCGGA	1 cut(s)	133
AciI	CCGC	1 cut(s)	318
AclWI	GGATC	1 cut(s)	156
AcoI	YGGCCR	1 cut(s)	142
AcuI	CTGAAG	2 cut(s)	156, 213
AfiI	CCNNNNNNNGG	2 cut(s)	140, 289
AflII	CTTAAG	2 cut(s)	275, 302
AgsI	TTSAA	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	144
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
AluBI	AGCT	2 cut(s)	63, 301
AluI	AGCT	2 cut(s)	63, 301
AlwI	GGATC	1 cut(s)	156
Aor13HI	TCCGGA	1 cut(s)	133
AoxI	GGCC	2 cut(s)	142, 314
ApeKI	GCWGC	3 cut(s)	90, 222, 298
AspLEI	GCGC	1 cut(s)	95
AspS9I	GGNCC	1 cut(s)	315
AsuHPI	GGTGA	1 cut(s)	119
AsuII	TTCGAA	1 cut(s)	160
BalI	TGGCCA	1 cut(s)	144
BbvI	GCAGC	3 cut(s)	77, 209, 310
BciT130I	CCWGG	1 cut(s)	146
BfaI	CTAG	2 cut(s)	116, 331
BfrI	CTTAAG	2 cut(s)	275, 302
BisI	GCNGC	3 cut(s)	91, 223, 299
BlsI	GCNGC	3 cut(s)	92, 224, 300
Bme1390I	CCNGG	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	146
BmsI	GCATC	1 cut(s)	127
BplI	GAGNNNNNCTC	2 cut(s)	237, 269
Bpu10I	CCTNAGC	1 cut(s)	323
Bpu14I	TTCGAA	1 cut(s)	160
BsaAI	YACGTR	1 cut(s)	209
BsaWI	WCCGGW	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 289
BseAI	TCCGGA	1 cut(s)	133
BseBI	CCWGG	1 cut(s)	146
BseGI	GGATG	1 cut(s)	142
BseLI	CCNNNNNNNGG	2 cut(s)	140, 289
BseXI	GCAGC	3 cut(s)	77, 209, 310
BshFI	GGCC	2 cut(s)	144, 316
BsiSI	CCGG	1 cut(s)	134
BslFI	GGGAC	1 cut(s)	265
BslI	CCNNNNNNNGG	2 cut(s)	140, 289
BsmFI	GGGAC	1 cut(s)	265
BsmI	GAATGC	1 cut(s)	20
BsnI	GGCC	2 cut(s)	144, 316
Bsp119I	TTCGAA	1 cut(s)	160
Bsp13I	TCCGGA	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	109, 148
BspACI	CCGC	1 cut(s)	318
BspANI	GGCC	2 cut(s)	144, 316
BspEI	TCCGGA	1 cut(s)	133
BspPI	GGATC	1 cut(s)	156
BspT104I	TTCGAA	1 cut(s)	160
BspTI	CTTAAG	2 cut(s)	275, 302
BssMI	GATC	2 cut(s)	109, 148
Bst2UI	CCWGG	1 cut(s)	146
Bst4CI	ACNGT	1 cut(s)	41
BstAFI	CTTAAG	2 cut(s)	275, 302
BstBAI	YACGTR	1 cut(s)	209
BstBI	TTCGAA	1 cut(s)	160
BstC8I	GCNNGC	3 cut(s)	142, 314, 318
BstDEI	CTNAG	1 cut(s)	323
BstF5I	GGATG	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	2 cut(s)	112, 151
BstMBI	GATC	2 cut(s)	109, 148
BstNI	CCWGG	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	144
BstV1I	GCAGC	3 cut(s)	77, 209, 310
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	144, 316
BtsCI	GGATG	1 cut(s)	142
Cac8I	GCNNGC	3 cut(s)	142, 314, 318
CfoI	GCGC	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	315
CviAII	CATG	2 cut(s)	250, 284
CviJI	RGCY	8 cut(s)	23, 53, 63, 90, 144, 170, 301, 316
CviKI_1	RGCY	8 cut(s)	23, 53, 63, 90, 144, 170, 301, 316
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	2 cut(s)	111, 150
DpnII	GATC	2 cut(s)	109, 148
EaeI	YGGCCR	1 cut(s)	142
Eco32I	GATATC	1 cut(s)	121
Eco57I	CTGAAG	2 cut(s)	156, 213
EcoRII	CCWGG	1 cut(s)	144
EcoRV	GATATC	1 cut(s)	121
FaeI	CATG	2 cut(s)	253, 287
FaiI	YATR	7 cut(s)	50, 57, 154, 185, 202, 251, 285
FaqI	GGGAC	1 cut(s)	265
FatI	CATG	2 cut(s)	249, 283
FauI	CCCGC	1 cut(s)	325
Fnu4HI	GCNGC	3 cut(s)	91, 223, 299
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	3 cut(s)	91, 223, 299
FspBI	CTAG	2 cut(s)	116, 331
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	3 cut(s)	91, 223, 299
HaeIII	GGCC	2 cut(s)	144, 316
HapII	CCGG	1 cut(s)	134
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	2 cut(s)	253, 287
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HinfI	GANTC	1 cut(s)	246
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	1 cut(s)	119
Hpy188I	TCNGA	5 cut(s)	67, 74, 125, 175, 193
Hpy188III	TCNNGA	1 cut(s)	134
HpyCH4III	ACNGT	1 cut(s)	41
HpyCH4IV	ACGT	1 cut(s)	208
HpyCH4V	TGCA	2 cut(s)	18, 225
HpyF3I	CTNAG	1 cut(s)	323
HpySE526I	ACGT	1 cut(s)	208
Hsp92II	CATG	2 cut(s)	253, 287
HspAI	GCGC	1 cut(s)	93
Kpn2I	TCCGGA	1 cut(s)	133
Kzo9I	GATC	2 cut(s)	109, 148
LmnI	GCTCC	1 cut(s)	258
LpnPI	CCDG	8 cut(s)	58, 63, 72, 126, 131, 147, 158, 298
Lsp1109I	GCAGC	3 cut(s)	77, 209, 310
LweI	GCATC	1 cut(s)	127
MaeI	CTAG	2 cut(s)	116, 331
MaeII	ACGT	1 cut(s)	208
MalI	GATC	2 cut(s)	111, 150
MboI	GATC	2 cut(s)	109, 148
MboII	GAAGA	1 cut(s)	206
MflI	RGATCY	1 cut(s)	148
MlsI	TGGCCA	1 cut(s)	144
MluCI	AATT	1 cut(s)	287
MluNI	TGGCCA	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	255
MnlI	CCTC	2 cut(s)	74, 282
Mox20I	TGGCCA	1 cut(s)	144
MroI	TCCGGA	1 cut(s)	133
MscI	TGGCCA	1 cut(s)	144
MseI	TTAA	2 cut(s)	276, 303
MslI	CAYNNNNRTG	1 cut(s)	161
Msp20I	TGGCCA	1 cut(s)	144
MspCI	CTTAAG	2 cut(s)	275, 302
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	20
MvaI	CCWGG	1 cut(s)	146
NdeII	GATC	2 cut(s)	109, 148
NlaIII	CATG	2 cut(s)	253, 287
NspV	TTCGAA	1 cut(s)	160
PctI	GAATGC	1 cut(s)	20
PflMI	CCANNNNNTGG	1 cut(s)	289
PkrI	GCNGC	3 cut(s)	92, 224, 300
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
Ppu21I	YACGTR	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	144
PspGI	CCWGG	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	315
PsrI	GAACNNNNNNTAC	2 cut(s)	189, 221
PsuI	RGATCY	1 cut(s)	148
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	2 cut(s)	276, 303
SatI	GCNGC	3 cut(s)	91, 223, 299
Sau3AI	GATC	2 cut(s)	109, 148
Sau96I	GGNCC	1 cut(s)	315
SchI	GAGTC	1 cut(s)	255
ScrFI	CCNGG	1 cut(s)	146
SetI	ASST	5 cut(s)	65, 85, 184, 211, 303
SfaNI	GCATC	1 cut(s)	127
SfuI	TTCGAA	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	2 cut(s)	275, 302
SmoI	CTYRAG	2 cut(s)	275, 302
Sse9I	AATT	1 cut(s)	287
SsiI	CCGC	1 cut(s)	318
SspMI	CTAG	2 cut(s)	116, 331
StyD4I	CCNGG	1 cut(s)	144
TaaI	ACNGT	1 cut(s)	41
TaiI	ACGT	1 cut(s)	211
TaqI	TCGA	2 cut(s)	160, 244
TasI	AATT	1 cut(s)	287
Tru1I	TTAA	2 cut(s)	276, 303
Tru9I	TTAA	2 cut(s)	276, 303
TseI	GCWGC	3 cut(s)	90, 222, 298
TspDTI	ATGAA	2 cut(s)	17, 300
Van91I	CCANNNNNTGG	1 cut(s)	289
Vha464I	CTTAAG	2 cut(s)	275, 302
XspI	CTAG	2 cut(s)	116, 331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.