Rh1DG005900

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0006956
Physical Location & Seq
Forward (+)
940214 .. 941047
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG005900.1

Sequence Viewer

Length: 351 bp
ATGTTGTGTATGAAGAACTGCTCCTGTACAGCTTATGCAAATTCTAATATCAGGGAAGGAAGAAGTGGGTGCTTACTGTGGTTAGGTGATCTGATTGACTTAAGAAATTTAGCTGAGAAAGAGAATGGACAAGATATCCATATAAGATTAGCTGCATCAGAGCTAGATAATGAAGAGACTAGTACCAGAATCAATGCTAAACCTGCTAAATCCAATGTGAAGAAAGTGAGAATCATAGCTAGCACTCTTGTTTTATCTACTGGGCGTAGCTCTGCTCTTTTATGTTTGGAAGAAAGATGCAGGAAAACTGAGCCGCAGCCACAAAGAAAATCTGGAATTACCATTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

116

Amino Acids

12.83

Weight (kDa)

9.03

Isoelectric Point (pI)

60.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 3 - 34 2.4e-11 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 211
AciI CCGC 1 cut(s) 314
AcsI RAATTY 2 cut(s) 40, 106
AfaI GTAC 2 cut(s) 28, 184
AflII CTTAAG 1 cut(s) 100
AhlI ACTAGT 1 cut(s) 179
AluBI AGCT 6 cut(s) 32, 113, 152, 163, 239, 270
AluI AGCT 6 cut(s) 32, 113, 152, 163, 239, 270
Alw26I GTCTC 1 cut(s) 170
ApeKI GCWGC 2 cut(s) 152, 316
ApoI RAATTY 2 cut(s) 40, 106
AsuHPI GGTGA 1 cut(s) 98
AsuNHI GCTAGC 1 cut(s) 239
BbvI GCAGC 2 cut(s) 139, 328
BcoDI GTCTC 1 cut(s) 170
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 3 cut(s) 164, 180, 240
BfrI CTTAAG 1 cut(s) 100
BfuAI ACCTGC 1 cut(s) 211
BisI GCNGC 3 cut(s) 153, 314, 317
BlsI GCNGC 3 cut(s) 154, 315, 318
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 2 cut(s) 164, 287
BmtI GCTAGC 1 cut(s) 243
BmuI ACTGGG 1 cut(s) 270
Bse1I ACTGG 1 cut(s) 265
BseMII CTCAG 2 cut(s) 105, 300
BseNI ACTGG 1 cut(s) 265
BseXI GCAGC 2 cut(s) 139, 328
BsmAI GTCTC 1 cut(s) 170
Bsp1407I TGTACA 1 cut(s) 26
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 1 cut(s) 314
BspCNI CTCAG 2 cut(s) 106, 301
BspMI ACCTGC 1 cut(s) 211
BspOI GCTAGC 1 cut(s) 243
BspTI CTTAAG 1 cut(s) 100
BsrGI TGTACA 1 cut(s) 26
BsrI ACTGG 1 cut(s) 265
BssMI GATC 1 cut(s) 88
Bst4CI ACNGT 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 168
BstAFI CTTAAG 1 cut(s) 100
BstAUI TGTACA 1 cut(s) 26
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 2 cut(s) 114, 309
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstV1I GCAGC 2 cut(s) 139, 328
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 1 cut(s) 241
Csp6I GTAC 2 cut(s) 27, 183
CviJI RGCY 8 cut(s) 32, 113, 152, 163, 239, 270, 313, 319
CviKI_1 RGCY 8 cut(s) 32, 113, 152, 163, 239, 270, 313, 319
CviQI GTAC 2 cut(s) 27, 183
DdeI CTNAG 2 cut(s) 114, 309
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco32I GATATC 1 cut(s) 136
EcoRV GATATC 1 cut(s) 136
FaiI YATR 6 cut(s) 11, 36, 141, 143, 236, 283
Fnu4HI GCNGC 3 cut(s) 153, 314, 317
Fsp4HI GCNGC 3 cut(s) 153, 314, 317
FspBI CTAG 3 cut(s) 164, 180, 240
GluI GCNGC 3 cut(s) 153, 314, 317
HinfI GANTC 2 cut(s) 189, 231
HphI GGTGA 1 cut(s) 98
Hpy188I TCNGA 2 cut(s) 93, 160
Hpy188III TCNNGA 1 cut(s) 333
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4V TGCA 3 cut(s) 38, 155, 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 2 cut(s) 114, 309
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 7 cut(s) 37, 37, 199, 216, 246, 286, 318
Lsp1109I GCAGC 2 cut(s) 139, 328
LweI GCATC 2 cut(s) 164, 287
MaeI CTAG 3 cut(s) 164, 180, 240
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 5 cut(s) 25, 72, 185, 232, 302
MluCI AATT 3 cut(s) 40, 106, 336
MseI TTAA 1 cut(s) 101
MspCI CTTAAG 1 cut(s) 100
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 1 cut(s) 88
NheI GCTAGC 1 cut(s) 239
PfeI GAWTC 2 cut(s) 189, 231
PkrI GCNGC 3 cut(s) 154, 315, 318
RsaI GTAC 2 cut(s) 28, 184
RsaNI GTAC 2 cut(s) 27, 183
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 3 cut(s) 153, 314, 317
Sau3AI GATC 1 cut(s) 88
SetI ASST 8 cut(s) 34, 88, 115, 154, 165, 205, 241, 272
SfaNI GCATC 2 cut(s) 164, 287
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
SpeI ACTAGT 1 cut(s) 179
Sse9I AATT 3 cut(s) 40, 106, 336
SsiI CCGC 1 cut(s) 314
SspMI CTAG 3 cut(s) 164, 180, 240
TaaI ACNGT 1 cut(s) 78
TasI AATT 3 cut(s) 40, 106, 336
TatI WGTACW 1 cut(s) 26
TauI GCSGC 1 cut(s) 316
TfiI GAWTC 2 cut(s) 189, 231
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TseI GCWGC 2 cut(s) 152, 316
TspDTI ATGAA 2 cut(s) 26, 186
Vha464I CTTAAG 1 cut(s) 100
XapI RAATTY 2 cut(s) 40, 106
XspI CTAG 3 cut(s) 164, 180, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.