RchiOBHm_Chr1g0314471

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006956
Physical Location & Seq
Forward (+)
1727876 .. 1729065
1190 bp
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UTR
Exon/CDS
Intron
PRQ54508

Sequence Viewer

Length: 453 bp
ATGACAGGTGCCAACTTAATCCCATTCCAGAAGTACACTGGGATCAAATTGCCAAGCACCAAACAATCCTGGTTTAACACAAGTCTGAACCTCAAGGAATGTGAGATGTTGTGTATGAAGAACTGCTCCTGTACAGCTTATGCAAATTCCAATATCAGGGAAGGAAGAAGTGGGTGCTTGCTGTGGTTAGGTGATCTGATTGACTTAAGAAATTTAACTGAGAAAGAGAATGGGCAAGATATCCATATAAGATTAGCTGCATCAGAGCAAGATAATGAAGAGACTAGTACCCAAATCAATGCTAAACCTGCTAAATCCAATGTGAAGAAAGTGAGAATCGTAGCTAGCACTCTTGTTTTATCTACTGGGCGTAGCTCTGCTCTTTTACGTTTGGAAGAAAGATGGAAAACTGAGCCGCAGCCACAAAGAAAATCTGGAATTACCATTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

150

Amino Acids

16.79

Weight (kDa)

9.2

Isoelectric Point (pI)

61.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 9 - 69 3.4e-19 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 316
AccB1I GGYRCC 1 cut(s) 8
AciI CCGC 1 cut(s) 416
AclWI GGATC 1 cut(s) 50
AcsI RAATTY 2 cut(s) 145, 211
AfaI GTAC 3 cut(s) 35, 133, 289
AfiI CCNNNNNNNGG 1 cut(s) 156
AflII CTTAAG 1 cut(s) 205
AhlI ACTAGT 1 cut(s) 284
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 4 cut(s) 137, 257, 344, 375
AluI AGCT 4 cut(s) 137, 257, 344, 375
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 1 cut(s) 50
ApeKI GCWGC 2 cut(s) 257, 418
ApoI RAATTY 2 cut(s) 145, 211
AsuHPI GGTGA 1 cut(s) 203
AsuNHI GCTAGC 1 cut(s) 344
BanI GGYRCC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 244, 430
BccI CCATC 1 cut(s) 396
BciT130I CCWGG 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 275
BcuI ACTAGT 1 cut(s) 284
BfaI CTAG 2 cut(s) 285, 345
BfrI CTTAAG 1 cut(s) 205
BfuAI ACCTGC 1 cut(s) 316
BisI GCNGC 3 cut(s) 258, 416, 419
BlsI GCNGC 3 cut(s) 259, 417, 420
Bme1390I CCNGG 1 cut(s) 70
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 70
BmrI ACTGGG 2 cut(s) 48, 375
BmsI GCATC 1 cut(s) 269
BmtI GCTAGC 1 cut(s) 348
BmuI ACTGGG 2 cut(s) 48, 375
BpuEI CTTGAG 1 cut(s) 77
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse1I ACTGG 2 cut(s) 43, 370
BseBI CCWGG 1 cut(s) 70
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMII CTCAG 2 cut(s) 210, 402
BseNI ACTGG 2 cut(s) 43, 370
BseXI GCAGC 2 cut(s) 244, 430
BshNI GGYRCC 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 275
Bsp1407I TGTACA 1 cut(s) 131
Bsp143I GATC 2 cut(s) 42, 193
BspACI CCGC 1 cut(s) 416
BspCNI CTCAG 2 cut(s) 211, 403
BspLI GGNNCC 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 316
BspOI GCTAGC 1 cut(s) 348
BspPI GGATC 1 cut(s) 50
BspT107I GGYRCC 1 cut(s) 8
BspTI CTTAAG 1 cut(s) 205
BsrGI TGTACA 1 cut(s) 131
BsrI ACTGG 2 cut(s) 43, 370
BssMI GATC 2 cut(s) 42, 193
Bst2UI CCWGG 1 cut(s) 70
Bst6I CTCTTC 1 cut(s) 273
BstAFI CTTAAG 1 cut(s) 205
BstAUI TGTACA 1 cut(s) 131
BstC8I GCNNGC 2 cut(s) 179, 346
BstDEI CTNAG 2 cut(s) 219, 411
BstKTI GATC 2 cut(s) 45, 196
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 2 cut(s) 42, 193
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstNI CCWGG 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 244, 430
BtsIMutI CAGTG 1 cut(s) 36
BveI ACCTGC 1 cut(s) 316
Cac8I GCNNGC 2 cut(s) 179, 346
Csp6I GTAC 3 cut(s) 34, 132, 288
CviJI RGCY 6 cut(s) 137, 257, 344, 375, 415, 421
CviKI_1 RGCY 6 cut(s) 137, 257, 344, 375, 415, 421
CviQI GTAC 3 cut(s) 34, 132, 288
DdeI CTNAG 2 cut(s) 219, 411
DpnI GATC 2 cut(s) 44, 195
DpnII GATC 2 cut(s) 42, 193
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco32I GATATC 1 cut(s) 241
EcoRII CCWGG 1 cut(s) 68
EcoRV GATATC 1 cut(s) 241
FaiI YATR 4 cut(s) 116, 141, 246, 248
Fnu4HI GCNGC 3 cut(s) 258, 416, 419
Fsp4HI GCNGC 3 cut(s) 258, 416, 419
FspBI CTAG 2 cut(s) 285, 345
GluI GCNGC 3 cut(s) 258, 416, 419
HinfI GANTC 1 cut(s) 336
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 36
Hpy188I TCNGA 3 cut(s) 87, 198, 265
Hpy188III TCNNGA 2 cut(s) 28, 435
Hpy8I GTNNAC 1 cut(s) 36
HpyAV CCTTC 1 cut(s) 155
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 2 cut(s) 143, 260
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 2 cut(s) 219, 411
HpySE526I ACGT 1 cut(s) 388
Kzo9I GATC 2 cut(s) 42, 193
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 9 cut(s) 24, 41, 55, 82, 142, 142, 321, 351, 420
Lsp1109I GCAGC 2 cut(s) 244, 430
LweI GCATC 1 cut(s) 269
MaeI CTAG 2 cut(s) 285, 345
MaeII ACGT 1 cut(s) 388
MalI GATC 2 cut(s) 44, 195
MboI GATC 2 cut(s) 42, 193
MboII GAAGA 5 cut(s) 130, 177, 290, 337, 407
MluCI AATT 4 cut(s) 47, 145, 211, 438
MnlI CCTC 1 cut(s) 101
MseI TTAA 4 cut(s) 17, 75, 206, 215
MspCI CTTAAG 1 cut(s) 205
MspR9I CCNGG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 70
MwoI GCNNNNNNNGC 1 cut(s) 308
NdeII GATC 2 cut(s) 42, 193
NheI GCTAGC 1 cut(s) 344
NlaIV GGNNCC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 336
PkrI GCNGC 3 cut(s) 259, 417, 420
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 10
RsaI GTAC 3 cut(s) 35, 133, 289
RsaNI GTAC 3 cut(s) 34, 132, 288
SaqAI TTAA 4 cut(s) 17, 75, 206, 215
SatI GCNGC 3 cut(s) 258, 416, 419
Sau3AI GATC 2 cut(s) 42, 193
ScrFI CCNGG 1 cut(s) 70
SetI ASST 9 cut(s) 10, 93, 139, 193, 259, 310, 346, 377, 391
SfaNI GCATC 1 cut(s) 269
SmlI CTYRAG 2 cut(s) 92, 205
SmoI CTYRAG 2 cut(s) 92, 205
SpeI ACTAGT 1 cut(s) 284
Sse9I AATT 4 cut(s) 47, 145, 211, 438
SsiI CCGC 1 cut(s) 416
SspMI CTAG 2 cut(s) 285, 345
StyD4I CCNGG 1 cut(s) 68
TaiI ACGT 1 cut(s) 391
TasI AATT 4 cut(s) 47, 145, 211, 438
TatI WGTACW 2 cut(s) 33, 131
TauI GCSGC 1 cut(s) 418
TfiI GAWTC 1 cut(s) 336
Tru1I TTAA 4 cut(s) 17, 75, 206, 215
Tru9I TTAA 4 cut(s) 17, 75, 206, 215
TscAI CASTG 1 cut(s) 43
TseI GCWGC 2 cut(s) 257, 418
TspDTI ATGAA 2 cut(s) 131, 291
TspRI CASTG 1 cut(s) 43
Vha464I CTTAAG 1 cut(s) 205
XapI RAATTY 2 cut(s) 145, 211
XcmI CCANNNNNNNNNTGG 1 cut(s) 35
XspI CTAG 2 cut(s) 285, 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.