Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002833.1

Orthogroup ID

OG0006956

Physical Location & Seq

Genomic Coordinates Forward (+)

142533 .. 143348

Gene Structure 816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002833.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgttgtgtatgaagaactgctcctgtacagcttatgcaaattctaatatcagggaaggaagaagtgggtgcttgctgtggttaggtgatctgattgacttaagaaatttaactgagaaagagaatggacaagatatccatataagattagctgcatcagagcaagataatgaagagactagtaccagaatcaatgctaaacctgctaaatccaatgtgaagaaagtgagaatcatagctagcactcttgttttatctactgggcgtagctctgctcttttatgtttggaagaaagatgcaggaaaactgagccgcagccacaaggaaaatctggaattaccattgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

116

Amino Acids

12.78

Weight (kDa)

8.83

Isoelectric Point (pI)

65.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006956)

Species	Orthologous Gene IDs
malus_domestica	MD00G1151300.v1.1 MD05G1231600.v1.1 MD12G1047400.v1.1
rosa_chinensis	RchiOBHm_Chr1g0314381 RchiOBHm_Chr1g0314471 RchiOBHm_Chr1g0314481 RchiOBHm_Chr1g0314501 RchiOBHm_Chr1g0314511 RchiOBHm_Chr1g0314681 RchiOBHm_Chr1g0314691 RchiOBHm_Chr1g0314751 RchiOBHm_Chr1g0314761 RchiOBHm_Chr5g0026081
rosa_multiflora	Rmu_sc0002833.1_g000031
rosa_roxburghii	Rroxscaffold_1G00053240 Rroxscaffold_4G00331900
rosa_rugosa	Rorug01G0001700
rosa_samantha	Rh1AG010700 Rh1AG011900 Rh1AG012600 Rh1BG003500 Rh1BG003800 Rh1DG005900 Rh3BG299400 Rh5BG250700 Rh5CG198700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	211
AciI	CCGC	1 cut(s)	314
AcsI	RAATTY	2 cut(s)	40, 106
AfaI	GTAC	2 cut(s)	28, 184
AflII	CTTAAG	1 cut(s)	100
AhlI	ACTAGT	1 cut(s)	179
AluBI	AGCT	4 cut(s)	32, 152, 239, 270
AluI	AGCT	4 cut(s)	32, 152, 239, 270
Alw26I	GTCTC	1 cut(s)	170
ApeKI	GCWGC	2 cut(s)	152, 316
ApoI	RAATTY	2 cut(s)	40, 106
AsuHPI	GGTGA	1 cut(s)	98
AsuNHI	GCTAGC	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	139, 328
BcoDI	GTCTC	1 cut(s)	170
BcuI	ACTAGT	1 cut(s)	179
BfaI	CTAG	2 cut(s)	180, 240
BfrI	CTTAAG	1 cut(s)	100
BfuAI	ACCTGC	1 cut(s)	211
BisI	GCNGC	3 cut(s)	153, 314, 317
BlsI	GCNGC	3 cut(s)	154, 315, 318
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	2 cut(s)	164, 287
BmtI	GCTAGC	1 cut(s)	243
BmuI	ACTGGG	1 cut(s)	270
Bse1I	ACTGG	1 cut(s)	265
BseMII	CTCAG	2 cut(s)	105, 300
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	139, 328
BsmAI	GTCTC	1 cut(s)	170
Bsp1407I	TGTACA	1 cut(s)	26
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	1 cut(s)	314
BspCNI	CTCAG	2 cut(s)	106, 301
BspMI	ACCTGC	1 cut(s)	211
BspOI	GCTAGC	1 cut(s)	243
BspTI	CTTAAG	1 cut(s)	100
BsrGI	TGTACA	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	265
BssMI	GATC	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	168
BstAFI	CTTAAG	1 cut(s)	100
BstAUI	TGTACA	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	74, 241
BstDEI	CTNAG	2 cut(s)	114, 309
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstV1I	GCAGC	2 cut(s)	139, 328
BveI	ACCTGC	1 cut(s)	211
Cac8I	GCNNGC	2 cut(s)	74, 241
Csp6I	GTAC	2 cut(s)	27, 183
CviJI	RGCY	6 cut(s)	32, 152, 239, 270, 313, 319
CviKI_1	RGCY	6 cut(s)	32, 152, 239, 270, 313, 319
CviQI	GTAC	2 cut(s)	27, 183
DdeI	CTNAG	2 cut(s)	114, 309
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	168
EarI	CTCTTC	1 cut(s)	168
Eco32I	GATATC	1 cut(s)	136
EcoRV	GATATC	1 cut(s)	136
FaiI	YATR	6 cut(s)	11, 36, 141, 143, 236, 283
Fnu4HI	GCNGC	3 cut(s)	153, 314, 317
Fsp4HI	GCNGC	3 cut(s)	153, 314, 317
FspBI	CTAG	2 cut(s)	180, 240
GluI	GCNGC	3 cut(s)	153, 314, 317
HinfI	GANTC	2 cut(s)	189, 231
HphI	GGTGA	1 cut(s)	98
Hpy188I	TCNGA	2 cut(s)	93, 160
Hpy188III	TCNNGA	1 cut(s)	333
HpyAV	CCTTC	1 cut(s)	50
HpyCH4V	TGCA	3 cut(s)	38, 155, 300
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	2 cut(s)	114, 309
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	7 cut(s)	37, 37, 199, 216, 246, 286, 318
Lsp1109I	GCAGC	2 cut(s)	139, 328
LweI	GCATC	2 cut(s)	164, 287
MaeI	CTAG	2 cut(s)	180, 240
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	5 cut(s)	25, 72, 185, 232, 302
MluCI	AATT	3 cut(s)	40, 106, 336
MseI	TTAA	2 cut(s)	101, 110
MspCI	CTTAAG	1 cut(s)	100
MwoI	GCNNNNNNNGC	1 cut(s)	203
NdeII	GATC	1 cut(s)	88
NheI	GCTAGC	1 cut(s)	239
PfeI	GAWTC	2 cut(s)	189, 231
PkrI	GCNGC	3 cut(s)	154, 315, 318
RsaI	GTAC	2 cut(s)	28, 184
RsaNI	GTAC	2 cut(s)	27, 183
SaqAI	TTAA	2 cut(s)	101, 110
SatI	GCNGC	3 cut(s)	153, 314, 317
Sau3AI	GATC	1 cut(s)	88
SetI	ASST	6 cut(s)	34, 88, 154, 205, 241, 272
SfaNI	GCATC	2 cut(s)	164, 287
SmlI	CTYRAG	1 cut(s)	100
SmoI	CTYRAG	1 cut(s)	100
SpeI	ACTAGT	1 cut(s)	179
Sse9I	AATT	3 cut(s)	40, 106, 336
SsiI	CCGC	1 cut(s)	314
SspMI	CTAG	2 cut(s)	180, 240
TasI	AATT	3 cut(s)	40, 106, 336
TatI	WGTACW	1 cut(s)	26
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	2 cut(s)	189, 231
Tru1I	TTAA	2 cut(s)	101, 110
Tru9I	TTAA	2 cut(s)	101, 110
TseI	GCWGC	2 cut(s)	152, 316
TspDTI	ATGAA	2 cut(s)	26, 186
Vha464I	CTTAAG	1 cut(s)	100
XapI	RAATTY	2 cut(s)	40, 106
XspI	CTAG	2 cut(s)	180, 240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.