RchiOBHm_Chr1g0314381

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006956
Physical Location & Seq
Forward (+)
1645508 .. 1648950
3443 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54502

Sequence Viewer

Length: 936 bp
ATGTTGTGTATGAAGAACTGCTCCTGTACAGCTTATGCAAATTCTAATATCAGGGAAGGAAGAAGTGGGTGCTTGCTGTGGTTAGGTGATCTGATTGACTTAAGAAATTTAGCTGAGAAAGAGAATGGACAAGATATCCATATAAGATTAGCTGCATCAGAGCAAGATAATGAAGAGACTAGTACCAGAATCAATGCTAAACCTGCTAAATCCAATGTGAAGAAAGTGAGAATCGTAGCTAGCACTCTTGTTTTATCTACTGGGCGTAGCTCTGCTCTTTTATGTTTGGAAGAAAGATGGAAAACTGAGCCGCGGCCACAAAGAAAATCTGGAATTACCATTGGTATGATGGAAGATGGACAAGAAATAACAGTGAAAAGGCTCGCAAGAGACTCTATGCAAGGAATTAATGAGTTCAAAAATGAGCTATTCCAAGTTGGACTAGAAGACCGAAGAAGCCCAAGTCAAGTTGGATTGGAAAGAGACATATTCGGCAGAAAACCTAGCATGTTGAGACACAGAAAACACAGCATATTCGGCAGAGAACAAGGAGAAGAAAAAGCTCTCACCATCGTTGGACCCGATGGTTACGTGTCCCCAGAATACATAATTGATAGGTTCTACTCAATAAAATCCAATGTCTACAGCTATGGAGTTTTGGTGTTAGAGATAGAGAGTGGGAAGAGTAACCGAGGATTCTCACATCCAGGCCAAAATCGCAACCTTTTTGGACATCTGTTCATAGAAGGTAGGTCCATCGAACTTCTTGATCCATCAGTAGAGGACTCTAGCACTCTACATGAAGTTGTGAGACCGATTCATGTAGGTCTTTTATGTGTGCAACAAAAACCACAAGATAGGCCGAGTATGCCAGCTGCTGTTCTAATATTGAGTGGTGAAGGTGCATTGCCTCAACCTCAGAAGCTTGGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

311

Amino Acids

34.74

Weight (kDa)

8.48

Isoelectric Point (pI)

59.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 3 - 34 1.2e-10 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 211
AccI GTMKAC 1 cut(s) 642
AccII CGCG 1 cut(s) 313
AciI CCGC 2 cut(s) 311, 313
AclWI GGATC 1 cut(s) 764
AcoI YGGCCR 1 cut(s) 314
AcsI RAATTY 2 cut(s) 40, 106
AfaI GTAC 2 cut(s) 28, 184
AflII CTTAAG 1 cut(s) 100
AflIII ACRYGT 1 cut(s) 591
AgsI TTSAA 1 cut(s) 418
AhlI ACTAGT 1 cut(s) 179
AjnI CCWGG 1 cut(s) 706
Alw26I GTCTC 5 cut(s) 170, 384, 477, 508, 805
AlwI GGATC 1 cut(s) 764
AlwNI CAGNNNCTG 1 cut(s) 878
AoxI GGCC 3 cut(s) 314, 709, 860
ApeKI GCWGC 2 cut(s) 152, 875
ApoI RAATTY 2 cut(s) 40, 106
AseI ATTAAT 1 cut(s) 408
AspS9I GGNCC 2 cut(s) 578, 753
AsuHPI GGTGA 3 cut(s) 98, 559, 908
AsuNHI GCTAGC 1 cut(s) 239
AvaII GGWCC 2 cut(s) 578, 753
BbsI GAAGAC 1 cut(s) 453
BbvI GCAGC 2 cut(s) 139, 862
BccI CCATC 7 cut(s) 291, 343, 350, 578, 578, 764, 781
BciT130I CCWGG 1 cut(s) 708
BcoDI GTCTC 5 cut(s) 170, 384, 477, 508, 805
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 5 cut(s) 180, 240, 443, 504, 789
BfmI CTRYAG 1 cut(s) 643
BfrI CTTAAG 1 cut(s) 100
BfuAI ACCTGC 1 cut(s) 211
BisI GCNGC 4 cut(s) 153, 311, 314, 876
BlsI GCNGC 4 cut(s) 154, 312, 315, 877
Bme1390I CCNGG 1 cut(s) 708
Bme18I GGWCC 2 cut(s) 578, 753
BmgT120I GGNCC 2 cut(s) 578, 753
BmiI GGNNCC 1 cut(s) 580
BmrFI CCNGG 1 cut(s) 708
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 1 cut(s) 164
BmtI GCTAGC 1 cut(s) 243
BmuI ACTGGG 1 cut(s) 270
BpiI GAAGAC 1 cut(s) 453
BsaAI YACGTR 1 cut(s) 592
BsaI GGTCTC 1 cut(s) 805
BsaJI CCNNGG 2 cut(s) 311, 691
BsaXI ACNNNNNCTCC 2 cut(s) 645, 675
Bse1I ACTGG 1 cut(s) 265
Bse3DI GCAATG 1 cut(s) 905
BseBI CCWGG 1 cut(s) 708
BseDI CCNNGG 2 cut(s) 311, 691
BseGI GGATG 1 cut(s) 703
BseMI GCAATG 1 cut(s) 905
BseMII CTCAG 3 cut(s) 105, 297, 932
BseNI ACTGG 1 cut(s) 265
BseXI GCAGC 2 cut(s) 139, 862
Bsh1236I CGCG 1 cut(s) 313
BshFI GGCC 3 cut(s) 316, 711, 862
BslFI GGGAC 1 cut(s) 580
BsmAI GTCTC 5 cut(s) 170, 384, 477, 508, 805
BsmFI GGGAC 1 cut(s) 580
BsnI GGCC 3 cut(s) 316, 711, 862
Bso31I GGTCTC 1 cut(s) 805
Bsp1407I TGTACA 1 cut(s) 26
Bsp143I GATC 2 cut(s) 88, 769
BspACI CCGC 2 cut(s) 311, 313
BspANI GGCC 3 cut(s) 316, 711, 862
BspCNI CTCAG 3 cut(s) 106, 298, 931
BspFNI CGCG 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 580
BspMI ACCTGC 1 cut(s) 211
BspOI GCTAGC 1 cut(s) 243
BspPI GGATC 1 cut(s) 764
BspTI CTTAAG 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 805
BsrDI GCAATG 1 cut(s) 905
BsrGI TGTACA 1 cut(s) 26
BsrI ACTGG 1 cut(s) 265
BssECI CCNNGG 2 cut(s) 311, 691
BssMI GATC 2 cut(s) 88, 769
Bst2UI CCWGG 1 cut(s) 708
Bst4CI ACNGT 1 cut(s) 373
Bst6I CTCTTC 2 cut(s) 168, 677
BstAFI CTTAAG 1 cut(s) 100
BstAUI TGTACA 1 cut(s) 26
BstBAI YACGTR 1 cut(s) 592
BstC8I GCNNGC 4 cut(s) 74, 241, 384, 873
BstDEI CTNAG 3 cut(s) 114, 306, 918
BstDSI CCRYGG 1 cut(s) 311
BstF5I GGATG 1 cut(s) 703
BstFNI CGCG 1 cut(s) 313
BstKTI GATC 2 cut(s) 91, 772
BstMAI GTCTC 5 cut(s) 170, 384, 477, 508, 805
BstMBI GATC 2 cut(s) 88, 769
BstMWI GCNNNNNNNGC 4 cut(s) 203, 537, 717, 868
BstNI CCWGG 1 cut(s) 708
BstNSI RCATGY 1 cut(s) 511
BstSCI CCNGG 1 cut(s) 706
BstSFI CTRYAG 1 cut(s) 643
BstUI CGCG 1 cut(s) 313
BstV1I GCAGC 2 cut(s) 139, 862
BstV2I GAAGAC 1 cut(s) 453
BsuRI GGCC 3 cut(s) 316, 711, 862
BtgI CCRYGG 1 cut(s) 311
BtsCI GGATG 1 cut(s) 703
BtsIMutI CAGTG 1 cut(s) 378
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 4 cut(s) 74, 241, 384, 873
CaiI CAGNNNCTG 1 cut(s) 878
Cfr13I GGNCC 2 cut(s) 578, 753
Cfr42I CCGCGG 1 cut(s) 314
Csp6I GTAC 2 cut(s) 27, 183
CviAII CATG 3 cut(s) 508, 800, 821
CviQI GTAC 2 cut(s) 27, 183
DdeI CTNAG 3 cut(s) 114, 306, 918
DpnI GATC 2 cut(s) 90, 771
DpnII GATC 2 cut(s) 88, 769
EaeI YGGCCR 1 cut(s) 314
Eam1104I CTCTTC 2 cut(s) 168, 677
EarI CTCTTC 2 cut(s) 168, 677
Eco31I GGTCTC 1 cut(s) 805
Eco32I GATATC 1 cut(s) 136
Eco47I GGWCC 2 cut(s) 578, 753
EcoRII CCWGG 1 cut(s) 706
EcoRV GATATC 1 cut(s) 136
FaeI CATG 3 cut(s) 511, 803, 824
FaqI GGGAC 1 cut(s) 580
FatI CATG 3 cut(s) 507, 799, 820
FblI GTMKAC 1 cut(s) 642
Fnu4HI GCNGC 4 cut(s) 153, 311, 314, 876
FokI GGATG 1 cut(s) 690
Fsp4HI GCNGC 4 cut(s) 153, 311, 314, 876
FspBI CTAG 5 cut(s) 180, 240, 443, 504, 789
GluI GCNGC 4 cut(s) 153, 311, 314, 876
HaeIII GGCC 3 cut(s) 316, 711, 862
Hin1II CATG 3 cut(s) 511, 803, 824
HindIII AAGCTT 1 cut(s) 923
HinfI GANTC 7 cut(s) 189, 231, 392, 696, 785, 817, 930
HphI GGTGA 3 cut(s) 98, 559, 908
Hpy166II GTNNAC 1 cut(s) 643
Hpy188I TCNGA 4 cut(s) 93, 160, 921, 935
Hpy188III TCNNGA 2 cut(s) 330, 767
Hpy8I GTNNAC 1 cut(s) 643
HpyAV CCTTC 3 cut(s) 50, 740, 893
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4IV ACGT 1 cut(s) 591
HpyCH4V TGCA 5 cut(s) 38, 155, 400, 841, 905
HpyF10VI GCNNNNNNNGC 4 cut(s) 203, 537, 717, 868
HpyF3I CTNAG 3 cut(s) 114, 306, 918
HpySE526I ACGT 1 cut(s) 591
Hsp92II CATG 3 cut(s) 511, 803, 824
KspI CCGCGG 1 cut(s) 314
Kzo9I GATC 2 cut(s) 88, 769
LmnI GCTCC 1 cut(s) 26
Lsp1109I GCAGC 2 cut(s) 139, 862
LweI GCATC 1 cut(s) 164
MaeI CTAG 5 cut(s) 180, 240, 443, 504, 789
MaeII ACGT 1 cut(s) 591
MaeIII GTNAC 2 cut(s) 587, 686
MalI GATC 2 cut(s) 90, 771
MboI GATC 2 cut(s) 88, 769
MluCI AATT 5 cut(s) 40, 106, 333, 405, 609
MlyI GAGTC 2 cut(s) 386, 779
MmeI TCCRAC 3 cut(s) 418, 451, 556
MnlI CCTC 4 cut(s) 686, 775, 921, 927
MseI TTAA 2 cut(s) 101, 408
MslI CAYNNNNRTG 1 cut(s) 344
MspA1I CMGCKG 2 cut(s) 313, 875
MspCI CTTAAG 1 cut(s) 100
MspR9I CCNGG 1 cut(s) 708
MvaI CCWGG 1 cut(s) 708
MvnI CGCG 1 cut(s) 313
MwoI GCNNNNNNNGC 4 cut(s) 203, 537, 717, 868
NdeII GATC 2 cut(s) 88, 769
NheI GCTAGC 1 cut(s) 239
NlaIII CATG 3 cut(s) 511, 803, 824
NlaIV GGNNCC 1 cut(s) 580
NmeAIII GCCGAG 1 cut(s) 888
NspI RCATGY 1 cut(s) 511
PcsI WCGNNNNNNNCGW 1 cut(s) 579
PfeI GAWTC 5 cut(s) 189, 231, 696, 817, 930
PkrI GCNGC 4 cut(s) 154, 312, 315, 877
PleI GAGTC 2 cut(s) 386, 779
PpsI GAGTC 2 cut(s) 386, 779
Ppu21I YACGTR 1 cut(s) 592
PshBI ATTAAT 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 706
PspGI CCWGG 1 cut(s) 706
PspN4I GGNNCC 1 cut(s) 580
PspPI GGNCC 2 cut(s) 578, 753
PstNI CAGNNNCTG 1 cut(s) 878
PvuII CAGCTG 1 cut(s) 875
RsaI GTAC 2 cut(s) 28, 184
RsaNI GTAC 2 cut(s) 27, 183
RseI CAYNNNNRTG 1 cut(s) 344
SacII CCGCGG 1 cut(s) 314
SaqAI TTAA 2 cut(s) 101, 408
SatI GCNGC 4 cut(s) 153, 311, 314, 876
Sau3AI GATC 2 cut(s) 88, 769
Sau96I GGNCC 2 cut(s) 578, 753
SchI GAGTC 2 cut(s) 386, 779
ScrFI CCNGG 1 cut(s) 708
SfaNI GCATC 1 cut(s) 164
SfcI CTRYAG 1 cut(s) 643
Sfr303I CCGCGG 1 cut(s) 314
SgrBI CCGCGG 1 cut(s) 314
SinI GGWCC 2 cut(s) 578, 753
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
SpeI ACTAGT 1 cut(s) 179
Sse9I AATT 5 cut(s) 40, 106, 333, 405, 609
SsiI CCGC 2 cut(s) 311, 313
SspI AATATT 1 cut(s) 888
SspMI CTAG 5 cut(s) 180, 240, 443, 504, 789
StyD4I CCNGG 1 cut(s) 706
TaaI ACNGT 1 cut(s) 373
TaiI ACGT 1 cut(s) 594
TaqI TCGA 1 cut(s) 759
TaqII GACCGA 2 cut(s) 465, 829
TasI AATT 5 cut(s) 40, 106, 333, 405, 609
TatI WGTACW 1 cut(s) 26
TauI GCSGC 2 cut(s) 313, 316
TfiI GAWTC 5 cut(s) 189, 231, 696, 817, 930
Tru1I TTAA 2 cut(s) 101, 408
Tru9I TTAA 2 cut(s) 101, 408
TscAI CASTG 1 cut(s) 378
TseI GCWGC 2 cut(s) 152, 875
TspDTI ATGAA 5 cut(s) 26, 186, 730, 809, 816
TspRI CASTG 1 cut(s) 378
Vha464I CTTAAG 1 cut(s) 100
VpaK11BI GGWCC 2 cut(s) 578, 753
VspI ATTAAT 1 cut(s) 408
XapI RAATTY 2 cut(s) 40, 106
XceI RCATGY 1 cut(s) 511
XcmI CCANNNNNNNNNTGG 1 cut(s) 346
XmiI GTMKAC 1 cut(s) 642
XspI CTAG 5 cut(s) 180, 240, 443, 504, 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.