RchiOBHm_Chr1g0314481

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006956
Physical Location & Seq
Forward (+)
1729067 .. 1730103
1037 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54509

Sequence Viewer

Length: 495 bp
ATGATGCTGATCTACAAATGCATTCCCAACAAAAGTGGTTACGTGTCCCCAGAATACACAATTGATGGGTTCTACTCGGTAAAATCCAATGTCTACAGCTATGGAGTTTTGGTGTTAGAGATAGAGAGTGGGAAGAGAAACCGAGGATTCTCACATCCAGGCCAAAATCGCAACCTTTTTGGACATGTGAGCTACAACTGTCAACTTGAAAGAAATGTATTGCTGCTTGATTCTTCGTCTTCTTCTTCTATAGATTCAGTAAAAGTGAATGTTTTCTTCTTTCAAGCATGGAAGCTGTTCATAGAAGGCAGGTCCATCGAACTTCTTGATCCATCGGTAGAGGACTCTAGCACTCTACATGAAGTTGTGCGACCGATTCATGTAGGTCTTCTATGTGTGCAACAAAAACCACAAGATAGGCCGAGTATGCCAGCTGCTGTTCTAATATTGAGTGGTGAAGGTGCATTGCCTCAACCTCAGAAGCTTGGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

164

Amino Acids

18.26

Weight (kDa)

6.89

Isoelectric Point (pI)

55.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 300
AccI GTMKAC 1 cut(s) 93
AclWI GGATC 1 cut(s) 323
AflIII ACRYGT 2 cut(s) 42, 184
AgsI TTSAA 2 cut(s) 209, 284
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 5 cut(s) 99, 192, 295, 434, 484
AluI AGCT 5 cut(s) 99, 192, 295, 434, 484
AlwI GGATC 1 cut(s) 323
AlwNI CAGNNNCTG 1 cut(s) 437
AoxI GGCC 2 cut(s) 160, 419
ApeKI GCWGC 2 cut(s) 223, 434
Asp700I GAANNNNTTC 2 cut(s) 272, 296
AspS9I GGNCC 1 cut(s) 312
AsuHPI GGTGA 1 cut(s) 467
AvaII GGWCC 1 cut(s) 312
BbsI GAAGAC 2 cut(s) 231, 380
BbvI GCAGC 2 cut(s) 210, 421
BccI CCATC 3 cut(s) 59, 323, 340
BcgI CGANNNNNNTGC 2 cut(s) 298, 332
BciT130I CCWGG 1 cut(s) 159
BfaI CTAG 1 cut(s) 348
BfmI CTRYAG 2 cut(s) 94, 249
BfuAI ACCTGC 1 cut(s) 300
BisI GCNGC 2 cut(s) 224, 435
BlsI GCNGC 2 cut(s) 225, 436
Bme1390I CCNGG 1 cut(s) 159
Bme18I GGWCC 1 cut(s) 312
BmgT120I GGNCC 1 cut(s) 312
BmrFI CCNGG 1 cut(s) 159
BpiI GAAGAC 2 cut(s) 231, 380
BsaAI YACGTR 1 cut(s) 43
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 142
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bse3DI GCAATG 1 cut(s) 464
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 142
BseGI GGATG 1 cut(s) 154
BseJI GATNNNNATC 1 cut(s) 8
BseMI GCAATG 1 cut(s) 464
BseMII CTCAG 1 cut(s) 491
BseXI GCAGC 2 cut(s) 210, 421
Bsh1285I CGRYCG 1 cut(s) 374
BshFI GGCC 2 cut(s) 162, 421
BsiEI CGRYCG 1 cut(s) 374
BslFI GGGAC 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 31
BsmI GAATGC 1 cut(s) 21
BsnI GGCC 2 cut(s) 162, 421
Bsp143I GATC 2 cut(s) 9, 328
BspANI GGCC 2 cut(s) 162, 421
BspCNI CTCAG 1 cut(s) 490
BspMI ACCTGC 1 cut(s) 300
BspPI GGATC 1 cut(s) 323
BsrDI GCAATG 1 cut(s) 464
BssECI CCNNGG 1 cut(s) 142
BssMI GATC 2 cut(s) 9, 328
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 200
Bst6I CTCTTC 1 cut(s) 128
BstBAI YACGTR 1 cut(s) 43
BstC8I GCNNGC 1 cut(s) 432
BstDEI CTNAG 1 cut(s) 477
BstF5I GGATG 1 cut(s) 154
BstKTI GATC 2 cut(s) 12, 331
BstMBI GATC 2 cut(s) 9, 328
BstMCI CGRYCG 1 cut(s) 374
BstMWI GCNNNNNNNGC 2 cut(s) 168, 427
BstNI CCWGG 1 cut(s) 159
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 157
BstSFI CTRYAG 2 cut(s) 94, 249
BstV1I GCAGC 2 cut(s) 210, 421
BstV2I GAAGAC 2 cut(s) 231, 380
BsuRI GGCC 2 cut(s) 162, 421
BtsCI GGATG 1 cut(s) 154
BveI ACCTGC 1 cut(s) 300
Cac8I GCNNGC 1 cut(s) 432
CaiI CAGNNNCTG 1 cut(s) 437
Cfr13I GGNCC 1 cut(s) 312
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 4 cut(s) 185, 288, 359, 380
CviJI RGCY 7 cut(s) 99, 162, 192, 295, 421, 434, 484
CviKI_1 RGCY 7 cut(s) 99, 162, 192, 295, 421, 434, 484
DdeI CTNAG 1 cut(s) 477
DpnI GATC 2 cut(s) 11, 330
DpnII GATC 2 cut(s) 9, 328
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 312
EcoRII CCWGG 1 cut(s) 157
EcoT22I ATGCAT 1 cut(s) 23
FaeI CATG 4 cut(s) 188, 291, 362, 383
FaiI YATR 9 cut(s) 102, 186, 251, 289, 302, 360, 381, 394, 428
FaqI GGGAC 1 cut(s) 31
FatI CATG 4 cut(s) 184, 287, 358, 379
FblI GTMKAC 1 cut(s) 93
Fnu4HI GCNGC 2 cut(s) 224, 435
FokI GGATG 1 cut(s) 141
Fsp4HI GCNGC 2 cut(s) 224, 435
FspBI CTAG 1 cut(s) 348
GluI GCNGC 2 cut(s) 224, 435
HaeIII GGCC 2 cut(s) 162, 421
Hin1II CATG 4 cut(s) 188, 291, 362, 383
HincII GTYRAC 1 cut(s) 203
HindII GTYRAC 1 cut(s) 203
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 6 cut(s) 147, 230, 254, 344, 376, 489
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 2 cut(s) 94, 203
Hpy188I TCNGA 2 cut(s) 480, 494
Hpy188III TCNNGA 1 cut(s) 326
Hpy8I GTNNAC 2 cut(s) 94, 203
HpyAV CCTTC 2 cut(s) 299, 452
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 3 cut(s) 21, 400, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 168, 427
HpyF3I CTNAG 1 cut(s) 477
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 4 cut(s) 188, 291, 362, 383
Kzo9I GATC 2 cut(s) 9, 328
LpnPI CCDG 5 cut(s) 63, 144, 171, 295, 444
Lsp1109I GCAGC 2 cut(s) 210, 421
MaeI CTAG 1 cut(s) 348
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 38
MalI GATC 2 cut(s) 11, 330
MboI GATC 2 cut(s) 9, 328
MboII GAAGA 7 cut(s) 145, 225, 231, 234, 237, 268, 380
MfeI CAATTG 1 cut(s) 60
MluCI AATT 1 cut(s) 60
MlyI GAGTC 1 cut(s) 338
MnlI CCTC 4 cut(s) 137, 334, 480, 486
Mph1103I ATGCAT 1 cut(s) 23
MroXI GAANNNNTTC 2 cut(s) 272, 296
MspA1I CMGCKG 1 cut(s) 434
MspR9I CCNGG 1 cut(s) 159
MunI CAATTG 1 cut(s) 60
Mva1269I GAATGC 1 cut(s) 21
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 168, 427
NdeII GATC 2 cut(s) 9, 328
NlaIII CATG 4 cut(s) 188, 291, 362, 383
NmeAIII GCCGAG 1 cut(s) 447
NsiI ATGCAT 1 cut(s) 23
NspI RCATGY 1 cut(s) 188
PciI ACATGT 1 cut(s) 184
PctI GAATGC 1 cut(s) 21
PdmI GAANNNNTTC 2 cut(s) 272, 296
PfeI GAWTC 5 cut(s) 147, 230, 254, 376, 489
PkrI GCNGC 2 cut(s) 225, 436
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
Ppu21I YACGTR 1 cut(s) 43
PscI ACATGT 1 cut(s) 184
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PspPI GGNCC 1 cut(s) 312
PstNI CAGNNNCTG 1 cut(s) 437
PvuII CAGCTG 1 cut(s) 434
SatI GCNGC 2 cut(s) 224, 435
Sau3AI GATC 2 cut(s) 9, 328
Sau96I GGNCC 1 cut(s) 312
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 1 cut(s) 159
SfcI CTRYAG 2 cut(s) 94, 249
SinI GGWCC 1 cut(s) 312
Sse9I AATT 1 cut(s) 60
SspI AATATT 1 cut(s) 447
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 200
TaiI ACGT 1 cut(s) 45
TaqI TCGA 1 cut(s) 318
TaqII GACCGA 1 cut(s) 388
TasI AATT 1 cut(s) 60
TfiI GAWTC 5 cut(s) 147, 230, 254, 376, 489
TseI GCWGC 2 cut(s) 223, 434
TspDTI ATGAA 3 cut(s) 289, 368, 375
VpaK11BI GGWCC 1 cut(s) 312
XceI RCATGY 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 93
XmnI GAANNNNTTC 2 cut(s) 272, 296
XspI CTAG 1 cut(s) 348
Zsp2I ATGCAT 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.