Rroxscaffold_4G00331900

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0006956
Physical Location & Seq
Reverse (-)
65898160 .. 65901042
2883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00331900.1

Sequence Viewer

Length: 783 bp
ATGACAAATACTTTTACTACAGTCACAAGCGACAGGCTTGAGATCGTTGGAAGGAATCAAAGCCAACTCACCGGAAAGGTGTTTGTCGTAACACCTGAGATAACGGAGTTAAGGAGAAATAAGAGTGAGGAGGCCAGCTATAATGAAGAGACTAGTACCAGAATCAATGCTAAACCTGCCAAATCCAATGTGAAGAAAGGTATGATGGAAGATGGACGAGAAATAGCAGTGAAAAGGCTCGCAAGAGACTCTATGCAAGGAATTAATGAGCTCAAAAATGAGGTTGTACATATTGCCAAACTTCATCACAGGAATCTAGTGAAGCTTCTAGGGTGCTGCTTTCAACAAGATGAAATGATGCTGATCTACAAATGCATTCCAACAAAAGCTTGGACTTCTTTATTTTCGATAGAGAGTGGGAAGAGAAACCGAGGATTCTCACATCCAGGCCACAATCGCAACCTTTTTGGACATGTGAGCTACAACTGTCAACTTGAAAGAAATGTATTGCTGCTTGATTCTTCTTCTTCTTCTTCTATATATTCAGTAAAAGTGAATGTTTTCATCTTTCAAGCATGGAAGCTGTTCATAGAAGGCAGGTCCATCGAACTTCTTGATCCATCGGTAGAGGACTCTATCACTCTTCATGAAGTTGTGCGACCGATTCATGTAGGTCTTTTATGTGTGCAACAAAAACCACAAGATGGGCCAAGTATGCCAGCTGCTGTTCTAATATTGAGTGGTGAAGGTGCATTGCCTCAACCTCAGAAGCCTGGAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

260

Amino Acids

29.14

Weight (kDa)

8.94

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 63 - 127 7.7e-08 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 184, 588
AccB7I CCANNNNNTGG 1 cut(s) 704
AclWI GGATC 1 cut(s) 611
AfaI GTAC 2 cut(s) 157, 288
AfiI CCNNNNNNNGG 1 cut(s) 704
AflIII ACRYGT 1 cut(s) 472
AgsI TTSAA 3 cut(s) 344, 497, 572
AhlI ACTAGT 1 cut(s) 152
AjnI CCWGG 2 cut(s) 445, 772
AluBI AGCT 7 cut(s) 138, 271, 325, 389, 480, 583, 722
AluI AGCT 7 cut(s) 138, 271, 325, 389, 480, 583, 722
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 2 cut(s) 143, 240
AlwI GGATC 1 cut(s) 611
AlwNI CAGNNNCTG 1 cut(s) 725
AoxI GGCC 3 cut(s) 132, 448, 707
ApeKI GCWGC 3 cut(s) 336, 511, 722
AseI ATTAAT 1 cut(s) 264
Asp700I GAANNNNTTC 2 cut(s) 560, 584
AspS9I GGNCC 2 cut(s) 600, 707
AsuHPI GGTGA 2 cut(s) 61, 755
AvaII GGWCC 1 cut(s) 600
BanII GRGCYC 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 3 cut(s) 323, 498, 709
BccI CCATC 5 cut(s) 199, 206, 611, 628, 698
BcgI CGANNNNNNTGC 2 cut(s) 586, 620
BciT130I CCWGG 2 cut(s) 447, 774
BcoDI GTCTC 2 cut(s) 143, 240
BcuI ACTAGT 1 cut(s) 152
BfaI CTAG 3 cut(s) 153, 317, 329
BfmI CTRYAG 1 cut(s) 18
BfuAI ACCTGC 2 cut(s) 184, 588
BisI GCNGC 3 cut(s) 337, 512, 723
BlsI GCNGC 3 cut(s) 338, 513, 724
Bme1390I CCNGG 2 cut(s) 447, 774
Bme18I GGWCC 1 cut(s) 600
BmgT120I GGNCC 2 cut(s) 600, 707
BmrFI CCNGG 2 cut(s) 447, 774
BmsI GCATC 1 cut(s) 348
BpuEI CTTGAG 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 362
BsaJI CCNNGG 1 cut(s) 430
BsaWI WCCGGW 1 cut(s) 71
Bsc4I CCNNNNNNNGG 1 cut(s) 704
Bse3DI GCAATG 1 cut(s) 752
Bse8I GATNNNNATC 1 cut(s) 362
BseBI CCWGG 2 cut(s) 447, 774
BseDI CCNNGG 1 cut(s) 430
BseGI GGATG 1 cut(s) 442
BseJI GATNNNNATC 1 cut(s) 362
BseLI CCNNNNNNNGG 1 cut(s) 704
BseMI GCAATG 1 cut(s) 752
BseMII CTCAG 2 cut(s) 87, 779
BseRI GAGGAG 1 cut(s) 143
BseXI GCAGC 3 cut(s) 323, 498, 709
Bsh1285I CGRYCG 1 cut(s) 662
BshFI GGCC 3 cut(s) 134, 450, 709
BsiEI CGRYCG 1 cut(s) 662
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 704
BsmAI GTCTC 2 cut(s) 143, 240
BsmI GAATGC 1 cut(s) 375
BsnI GGCC 3 cut(s) 134, 450, 709
Bsp1286I GDGCHC 1 cut(s) 273
Bsp1407I TGTACA 1 cut(s) 286
Bsp143I GATC 3 cut(s) 42, 363, 616
BspANI GGCC 3 cut(s) 134, 450, 709
BspCNI CTCAG 2 cut(s) 88, 778
BspHI TCATGA 1 cut(s) 646
BspMI ACCTGC 2 cut(s) 184, 588
BspPI GGATC 1 cut(s) 611
BsrDI GCAATG 1 cut(s) 752
BsrGI TGTACA 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 430
BssMI GATC 3 cut(s) 42, 363, 616
Bst2UI CCWGG 2 cut(s) 447, 774
Bst4CI ACNGT 2 cut(s) 22, 488
Bst6I CTCTTC 3 cut(s) 141, 416, 648
BstAUI TGTACA 1 cut(s) 286
BstC8I GCNNGC 3 cut(s) 136, 240, 720
BstDEI CTNAG 2 cut(s) 96, 765
BstF5I GGATG 1 cut(s) 442
BstKTI GATC 3 cut(s) 45, 366, 619
BstMAI GTCTC 2 cut(s) 143, 240
BstMBI GATC 3 cut(s) 42, 363, 616
BstMCI CGRYCG 1 cut(s) 662
BstMWI GCNNNNNNNGC 3 cut(s) 176, 456, 715
BstNI CCWGG 2 cut(s) 447, 774
BstNSI RCATGY 1 cut(s) 476
BstSCI CCNGG 2 cut(s) 445, 772
BstSFI CTRYAG 1 cut(s) 18
BstV1I GCAGC 3 cut(s) 323, 498, 709
BsuRI GGCC 3 cut(s) 134, 450, 709
BtsCI GGATG 1 cut(s) 442
BtsI GCAGTG 1 cut(s) 234
BtsIMutI CAGTG 1 cut(s) 234
BveI ACCTGC 2 cut(s) 184, 588
Cac8I GCNNGC 3 cut(s) 136, 240, 720
CaiI CAGNNNCTG 1 cut(s) 725
CciI TCATGA 1 cut(s) 646
Cfr13I GGNCC 2 cut(s) 600, 707
Csp6I GTAC 2 cut(s) 156, 287
CviAII CATG 4 cut(s) 473, 576, 647, 668
CviQI GTAC 2 cut(s) 156, 287
DdeI CTNAG 2 cut(s) 96, 765
DpnI GATC 3 cut(s) 44, 365, 618
DpnII GATC 3 cut(s) 42, 363, 616
Eam1104I CTCTTC 3 cut(s) 141, 416, 648
EarI CTCTTC 3 cut(s) 141, 416, 648
Ecl136II GAGCTC 1 cut(s) 271
Eco24I GRGCYC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 600
Eco53kI GAGCTC 1 cut(s) 271
EcoICRI GAGCTC 1 cut(s) 271
EcoRII CCWGG 2 cut(s) 445, 772
EcoT22I ATGCAT 1 cut(s) 377
EcoT38I GRGCYC 1 cut(s) 273
FaeI CATG 4 cut(s) 476, 579, 650, 671
FatI CATG 4 cut(s) 472, 575, 646, 667
Fnu4HI GCNGC 3 cut(s) 337, 512, 723
FokI GGATG 1 cut(s) 429
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 3 cut(s) 337, 512, 723
FspBI CTAG 3 cut(s) 153, 317, 329
GluI GCNGC 3 cut(s) 337, 512, 723
HaeIII GGCC 3 cut(s) 134, 450, 709
HapII CCGG 1 cut(s) 72
Hin1II CATG 4 cut(s) 476, 579, 650, 671
HincII GTYRAC 1 cut(s) 491
HindII GTYRAC 1 cut(s) 491
HindIII AAGCTT 2 cut(s) 323, 387
HinfI GANTC 9 cut(s) 55, 162, 248, 313, 435, 518, 632, 664, 777
HpaII CCGG 1 cut(s) 72
HphI GGTGA 2 cut(s) 61, 755
Hpy166II GTNNAC 1 cut(s) 491
Hpy188I TCNGA 2 cut(s) 768, 782
Hpy188III TCNNGA 2 cut(s) 614, 647
Hpy8I GTNNAC 1 cut(s) 491
HpyAV CCTTC 3 cut(s) 45, 587, 740
HpyCH4III ACNGT 2 cut(s) 22, 488
HpyCH4V TGCA 4 cut(s) 256, 375, 688, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 456, 715
HpyF3I CTNAG 2 cut(s) 96, 765
Hsp92II CATG 4 cut(s) 476, 579, 650, 671
Kzo9I GATC 3 cut(s) 42, 363, 616
Lsp1109I GCAGC 3 cut(s) 323, 498, 709
LweI GCATC 1 cut(s) 348
MaeI CTAG 3 cut(s) 153, 317, 329
MaeIII GTNAC 2 cut(s) 22, 88
MalI GATC 3 cut(s) 44, 365, 618
MboI GATC 3 cut(s) 42, 363, 616
MhlI GDGCHC 1 cut(s) 273
MluCI AATT 1 cut(s) 261
MlyI GAGTC 2 cut(s) 242, 626
MmeI TCCRAC 2 cut(s) 28, 404
MnlI CCTC 7 cut(s) 121, 124, 274, 425, 622, 768, 774
Mph1103I ATGCAT 1 cut(s) 377
MroXI GAANNNNTTC 2 cut(s) 560, 584
MseI TTAA 2 cut(s) 110, 264
MspA1I CMGCKG 1 cut(s) 722
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 2 cut(s) 447, 774
Mva1269I GAATGC 1 cut(s) 375
MvaI CCWGG 2 cut(s) 447, 774
MwoI GCNNNNNNNGC 3 cut(s) 176, 456, 715
NdeII GATC 3 cut(s) 42, 363, 616
NlaIII CATG 4 cut(s) 476, 579, 650, 671
NmuCI GTSAC 1 cut(s) 22
NsiI ATGCAT 1 cut(s) 377
NspI RCATGY 1 cut(s) 476
PagI TCATGA 1 cut(s) 646
PciI ACATGT 1 cut(s) 472
PctI GAATGC 1 cut(s) 375
PdmI GAANNNNTTC 2 cut(s) 560, 584
PfeI GAWTC 7 cut(s) 55, 162, 313, 435, 518, 664, 777
PflMI CCANNNNNTGG 1 cut(s) 704
PkrI GCNGC 3 cut(s) 338, 513, 724
PleI GAGTC 2 cut(s) 242, 626
PpsI GAGTC 2 cut(s) 242, 626
PscI ACATGT 1 cut(s) 472
PshBI ATTAAT 1 cut(s) 264
Psp124BI GAGCTC 1 cut(s) 273
Psp6I CCWGG 2 cut(s) 445, 772
PspGI CCWGG 2 cut(s) 445, 772
PspPI GGNCC 2 cut(s) 600, 707
PstNI CAGNNNCTG 1 cut(s) 725
PvuII CAGCTG 1 cut(s) 722
RsaI GTAC 2 cut(s) 157, 288
RsaNI GTAC 2 cut(s) 156, 287
SacI GAGCTC 1 cut(s) 273
SaqAI TTAA 2 cut(s) 110, 264
SatI GCNGC 3 cut(s) 337, 512, 723
Sau3AI GATC 3 cut(s) 42, 363, 616
Sau96I GGNCC 2 cut(s) 600, 707
SchI GAGTC 2 cut(s) 242, 626
ScrFI CCNGG 2 cut(s) 447, 774
SduI GDGCHC 1 cut(s) 273
SfaNI GCATC 1 cut(s) 348
SfcI CTRYAG 1 cut(s) 18
SinI GGWCC 1 cut(s) 600
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SpeI ACTAGT 1 cut(s) 152
Sse9I AATT 1 cut(s) 261
SspI AATATT 1 cut(s) 735
SspMI CTAG 3 cut(s) 153, 317, 329
SstI GAGCTC 1 cut(s) 273
StyD4I CCNGG 2 cut(s) 445, 772
TaaI ACNGT 2 cut(s) 22, 488
TaqI TCGA 2 cut(s) 407, 606
TaqII GACCGA 1 cut(s) 676
TasI AATT 1 cut(s) 261
TatI WGTACW 1 cut(s) 286
TfiI GAWTC 7 cut(s) 55, 162, 313, 435, 518, 664, 777
Tru1I TTAA 2 cut(s) 110, 264
Tru9I TTAA 2 cut(s) 110, 264
TscAI CASTG 1 cut(s) 234
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 3 cut(s) 336, 511, 722
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 8 cut(s) 159, 293, 366, 553, 577, 635, 656, 663
TspGWI ACGGA 1 cut(s) 119
TspRI CASTG 1 cut(s) 234
Van91I CCANNNNNTGG 1 cut(s) 704
VpaK11BI GGWCC 1 cut(s) 600
VspI ATTAAT 1 cut(s) 264
XceI RCATGY 1 cut(s) 476
XcmI CCANNNNNNNNNTGG 1 cut(s) 387
XmnI GAANNNNTTC 2 cut(s) 560, 584
XspI CTAG 3 cut(s) 153, 317, 329
Zsp2I ATGCAT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.