RchiOBHm_Chr1g0314501

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006956
Physical Location & Seq
Forward (+)
1771555 .. 1773194
1640 bp
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UTR
Exon/CDS
Intron
PRQ54511

Sequence Viewer

Length: 345 bp
ATGTTGTGTATGAAGAACTGCTCCTGTACAGCTTATGCAAATTCTAATATCAGGGAAGGAAGAAGTGGGCGCTTGCTGTGGTTAGGTGATCTGATTGACTTAAGAAATTTAGCTGAGAAAGAGAATGGACAAGATATCCATATAAGATTAGCTGCATCAGAGCAAGATAATGAAGAGACTAATACCAGAATCAATGCTAAACCTGCTAAATCCAATGTGAAGAAAGTGAGAATTGTAGCTAGCACTCTTGTTTTATCTACTGGGCGTAGCTCTGCTCTTTTATGTTTGGAAGAAAGATGGGTATCCGAGTCTTTGACCCGACTAATCCCTAGGTCCCCCGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

114

Amino Acids

12.68

Weight (kDa)

9.1

Isoelectric Point (pI)

69.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 3 - 34 6e-09 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 211
AciI CCGC 1 cut(s) 339
AcsI RAATTY 2 cut(s) 40, 106
AfaI GTAC 1 cut(s) 28
AflII CTTAAG 1 cut(s) 100
AluBI AGCT 5 cut(s) 32, 113, 152, 239, 270
AluI AGCT 5 cut(s) 32, 113, 152, 239, 270
Alw26I GTCTC 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 2 cut(s) 40, 106
AspA2I CCTAGG 1 cut(s) 329
AspLEI GCGC 1 cut(s) 72
AspS9I GGNCC 1 cut(s) 333
AsuHPI GGTGA 1 cut(s) 98
AsuNHI GCTAGC 1 cut(s) 239
AvaII GGWCC 1 cut(s) 333
AvrII CCTAGG 1 cut(s) 329
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 291
BciVI GTATCC 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 2 cut(s) 240, 330
BfoI RGCGCY 1 cut(s) 73
BfrI CTTAAG 1 cut(s) 100
BfuAI ACCTGC 1 cut(s) 211
BfuI GTATCC 1 cut(s) 313
BisI GCNGC 1 cut(s) 153
BlnI CCTAGG 1 cut(s) 329
BlsI GCNGC 1 cut(s) 154
Bme18I GGWCC 1 cut(s) 333
BmgT120I GGNCC 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 335
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 1 cut(s) 164
BmtI GCTAGC 1 cut(s) 243
BmuI ACTGGG 1 cut(s) 270
BsaBI GATNNNNATC 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 265
Bse8I GATNNNNATC 1 cut(s) 301
BseDI CCNNGG 1 cut(s) 329
BseJI GATNNNNATC 1 cut(s) 301
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 139
BslFI GGGAC 1 cut(s) 319
BsmAI GTCTC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 319
Bsp1407I TGTACA 1 cut(s) 26
Bsp143I GATC 1 cut(s) 88
BspACI CCGC 1 cut(s) 339
BspCNI CTCAG 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 335
BspMI ACCTGC 1 cut(s) 211
BspOI GCTAGC 1 cut(s) 243
BspTI CTTAAG 1 cut(s) 100
BsrGI TGTACA 1 cut(s) 26
BsrI ACTGG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 1 cut(s) 88
BssT1I CCWWGG 1 cut(s) 329
Bst6I CTCTTC 1 cut(s) 168
BstAFI CTTAAG 1 cut(s) 100
BstAUI TGTACA 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 74, 241
BstDEI CTNAG 1 cut(s) 114
BstH2I RGCGCY 1 cut(s) 73
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 139
BsuI GTATCC 1 cut(s) 313
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 2 cut(s) 74, 241
CfoI GCGC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 333
Csp6I GTAC 1 cut(s) 27
CviJI RGCY 5 cut(s) 32, 113, 152, 239, 270
CviKI_1 RGCY 5 cut(s) 32, 113, 152, 239, 270
CviQI GTAC 1 cut(s) 27
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 329
Eco32I GATATC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 333
EcoO109I RGGNCCY 1 cut(s) 333
EcoRV GATATC 1 cut(s) 136
EcoT14I CCWWGG 1 cut(s) 329
ErhI CCWWGG 1 cut(s) 329
FaiI YATR 5 cut(s) 11, 36, 141, 143, 283
FaqI GGGAC 1 cut(s) 319
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 2 cut(s) 240, 330
GlaI GCGC 1 cut(s) 71
GluI GCNGC 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 73
HhaI GCGC 1 cut(s) 72
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 2 cut(s) 189, 308
HphI GGTGA 1 cut(s) 98
Hpy188I TCNGA 3 cut(s) 93, 160, 307
HpyAV CCTTC 1 cut(s) 50
HpyCH4V TGCA 2 cut(s) 38, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 1 cut(s) 114
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 5 cut(s) 37, 37, 199, 216, 246
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 164
MaeI CTAG 2 cut(s) 240, 330
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 5 cut(s) 25, 72, 185, 232, 302
MluCI AATT 3 cut(s) 40, 106, 231
MlyI GAGTC 1 cut(s) 317
MseI TTAA 1 cut(s) 101
MspCI CTTAAG 1 cut(s) 100
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 1 cut(s) 88
NheI GCTAGC 1 cut(s) 239
NlaIV GGNNCC 1 cut(s) 335
PfeI GAWTC 1 cut(s) 189
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 1 cut(s) 316
PpsI GAGTC 1 cut(s) 316
PpuMI RGGWCCY 1 cut(s) 333
Psp5II RGGWCCY 1 cut(s) 333
PspN4I GGNNCC 1 cut(s) 335
PspPI GGNCC 1 cut(s) 333
PspPPI RGGWCCY 1 cut(s) 333
RsaI GTAC 1 cut(s) 28
RsaNI GTAC 1 cut(s) 27
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 88
Sau96I GGNCC 1 cut(s) 333
SchI GAGTC 1 cut(s) 317
SetI ASST 8 cut(s) 34, 88, 115, 154, 205, 241, 272, 335
SfaNI GCATC 1 cut(s) 164
SinI GGWCC 1 cut(s) 333
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
Sse9I AATT 3 cut(s) 40, 106, 231
SsiI CCGC 1 cut(s) 339
SspMI CTAG 2 cut(s) 240, 330
StyI CCWWGG 1 cut(s) 329
TasI AATT 3 cut(s) 40, 106, 231
TatI WGTACW 1 cut(s) 26
TfiI GAWTC 1 cut(s) 189
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 26, 186
Vha464I CTTAAG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 333
XapI RAATTY 2 cut(s) 40, 106
XmaJI CCTAGG 1 cut(s) 329
XspI CTAG 2 cut(s) 240, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.