Rh1BG003500

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0006956
Physical Location & Seq
Forward (+)
531784 .. 542385
10602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG003500.1

Sequence Viewer

Length: 414 bp
ATGTTGTGTATGAAGAACTGCTCCTGTACAGCTTTTGCAAATTCCAATTTCAGGGAAGGAAGAAGTGGGTGCTTGCTGTGGTTAGGTGATCTGATTGACGTAGGAAATTTAACTGAGAAAGAGAATGGGCAAGATATCCATATAAGATTAGCTGCATCAGAGCAAGATAATGAAGAGACTTGTACCAGAATCAATGCTAAACCTGCTAAATCCAATGTGAAGAAAGTGAGAATCATAGCTAGCACTCTTGTTTTATCTACTGGGCGTAGCTCTGCTCTTTTATGTTTGGAAGAAAGATGGTGCATTGCCTCAACCTCAGAAGCCTGGAATCTGACAGAACTTGAAGATTCTACAGATGAGGCTACAGAATGTTCAGCTAATGAACTCACTGTTACACTAGTGAGGGCTCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

137

Amino Acids

15.04

Weight (kDa)

4.82

Isoelectric Point (pI)

59.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 3 - 34 1.6e-10 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 211
AcsI RAATTY 2 cut(s) 40, 106
AfaI GTAC 2 cut(s) 28, 184
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 1 cut(s) 344
AhlI ACTAGT 1 cut(s) 397
AjnI CCWGG 1 cut(s) 323
AluBI AGCT 5 cut(s) 32, 152, 239, 270, 377
AluI AGCT 5 cut(s) 32, 152, 239, 270, 377
Alw26I GTCTC 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 2 cut(s) 40, 106
AsuHPI GGTGA 1 cut(s) 98
AsuNHI GCTAGC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 409
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 291
BciT130I CCWGG 1 cut(s) 325
BcoDI GTCTC 1 cut(s) 170
BcuI ACTAGT 1 cut(s) 397
BfaI CTAG 2 cut(s) 240, 398
BfmI CTRYAG 2 cut(s) 351, 363
BfuAI ACCTGC 1 cut(s) 211
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 325
BmrFI CCNGG 1 cut(s) 325
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 1 cut(s) 164
BmtI GCTAGC 1 cut(s) 243
BmuI ACTGGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 265
Bse3DI GCAATG 1 cut(s) 303
BseBI CCWGG 1 cut(s) 325
BseLI CCNNNNNNNGG 1 cut(s) 51
BseMI GCAATG 1 cut(s) 303
BseMII CTCAG 2 cut(s) 105, 330
BseNI ACTGG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 170
Bsp1286I GDGCHC 1 cut(s) 409
Bsp1407I TGTACA 1 cut(s) 26
Bsp143I GATC 1 cut(s) 88
BspCNI CTCAG 2 cut(s) 106, 329
BspMI ACCTGC 1 cut(s) 211
BspOI GCTAGC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 303
BsrGI TGTACA 1 cut(s) 26
BsrI ACTGG 1 cut(s) 265
BssMI GATC 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 325
Bst4CI ACNGT 1 cut(s) 391
Bst6I CTCTTC 1 cut(s) 168
BstAUI TGTACA 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 74, 241
BstDEI CTNAG 2 cut(s) 114, 316
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 325
BstSCI CCNGG 1 cut(s) 323
BstSFI CTRYAG 2 cut(s) 351, 363
BstV1I GCAGC 1 cut(s) 139
BtsIMutI CAGTG 1 cut(s) 387
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 2 cut(s) 74, 241
Csp6I GTAC 2 cut(s) 27, 183
CviJI RGCY 8 cut(s) 32, 152, 239, 270, 323, 362, 377, 407
CviKI_1 RGCY 8 cut(s) 32, 152, 239, 270, 323, 362, 377, 407
CviQI GTAC 2 cut(s) 27, 183
DdeI CTNAG 2 cut(s) 114, 316
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco24I GRGCYC 1 cut(s) 409
Eco32I GATATC 1 cut(s) 136
EcoRII CCWGG 1 cut(s) 323
EcoRV GATATC 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 409
FaiI YATR 5 cut(s) 11, 141, 143, 236, 283
Fnu4HI GCNGC 1 cut(s) 153
FriOI GRGCYC 1 cut(s) 409
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 2 cut(s) 240, 398
GluI GCNGC 1 cut(s) 153
HinfI GANTC 4 cut(s) 189, 231, 328, 347
HphI GGTGA 1 cut(s) 98
Hpy188I TCNGA 4 cut(s) 93, 160, 319, 333
HpyAV CCTTC 1 cut(s) 50
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4IV ACGT 1 cut(s) 99
HpyCH4V TGCA 3 cut(s) 38, 155, 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 2 cut(s) 114, 316
HpySE526I ACGT 1 cut(s) 99
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 7 cut(s) 37, 37, 199, 216, 246, 310, 337
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 164
MaeI CTAG 2 cut(s) 240, 398
MaeII ACGT 1 cut(s) 99
MaeIII GTNAC 1 cut(s) 391
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 6 cut(s) 25, 72, 185, 232, 302, 356
MhlI GDGCHC 1 cut(s) 409
MluCI AATT 3 cut(s) 40, 46, 106
MnlI CCTC 4 cut(s) 319, 325, 352, 396
MseI TTAA 1 cut(s) 110
MspR9I CCNGG 1 cut(s) 325
MvaI CCWGG 1 cut(s) 325
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 1 cut(s) 88
NheI GCTAGC 1 cut(s) 239
PfeI GAWTC 4 cut(s) 189, 231, 328, 347
PkrI GCNGC 1 cut(s) 154
Psp6I CCWGG 1 cut(s) 323
PspGI CCWGG 1 cut(s) 323
RsaI GTAC 2 cut(s) 28, 184
RsaNI GTAC 2 cut(s) 27, 183
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 325
SduI GDGCHC 1 cut(s) 409
SetI ASST 9 cut(s) 34, 88, 102, 154, 205, 241, 272, 317, 379
SfaNI GCATC 1 cut(s) 164
SfcI CTRYAG 2 cut(s) 351, 363
SpeI ACTAGT 1 cut(s) 397
Sse9I AATT 3 cut(s) 40, 46, 106
SspMI CTAG 2 cut(s) 240, 398
StyD4I CCNGG 1 cut(s) 323
TaaI ACNGT 1 cut(s) 391
TaiI ACGT 1 cut(s) 102
TasI AATT 3 cut(s) 40, 46, 106
TatI WGTACW 1 cut(s) 26
TfiI GAWTC 4 cut(s) 189, 231, 328, 347
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TscAI CASTG 1 cut(s) 394
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 3 cut(s) 26, 186, 396
TspRI CASTG 1 cut(s) 394
XapI RAATTY 2 cut(s) 40, 106
XspI CTAG 2 cut(s) 240, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.