Rh5CG198700

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0006956
Physical Location & Seq
Reverse (-)
19879884 .. 19880921
1038 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG198700.1

Sequence Viewer

Length: 276 bp
ATGAATGCTAAACCTGCTAAATCCACTGTGAAGAAAGTGAGAATCATAGTTAGCATTCTTGTTTTGTCTACTGGGCTGCTGATACTGGGCGTATCTATGCTCTTTTATGTTTGGAAGAAAGATGTTTTATCACCGAGGAAGTTTATATTTGGTTTTATTGGTCCATATGGTTACATGTCCCCAGAATACACAATTGATGGTTTCTACTCGATAAAATCCGATGTCTACAAGTATGGAGTTTTGGTGCTTGAGATAGTGAGTGGGAAGAGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

91

Amino Acids

10.26

Weight (kDa)

9.84

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 55 - 88 4.8e-06 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 22
AccI GTMKAC 2 cut(s) 68, 225
AflIII ACRYGT 1 cut(s) 174
ApeKI GCWGC 1 cut(s) 76
AspS9I GGNCC 1 cut(s) 161
AsuHPI GGTGA 1 cut(s) 123
AvaII GGWCC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 63
BccI CCATC 1 cut(s) 191
BfuAI ACCTGC 1 cut(s) 22
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 161
BmgT120I GGNCC 1 cut(s) 161
BmrI ACTGGG 2 cut(s) 81, 95
BmuI ACTGGG 2 cut(s) 81, 95
BpuEI CTTGAG 1 cut(s) 269
BsaJI CCNNGG 1 cut(s) 134
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bse1I ACTGG 2 cut(s) 76, 90
BseDI CCNNGG 1 cut(s) 134
BseNI ACTGG 2 cut(s) 76, 90
BseXI GCAGC 1 cut(s) 63
BslFI GGGAC 1 cut(s) 163
BsmFI GGGAC 1 cut(s) 163
BsmI GAATGC 2 cut(s) 10, 54
BspMI ACCTGC 1 cut(s) 22
BsrI ACTGG 2 cut(s) 76, 90
BssECI CCNNGG 1 cut(s) 134
Bst4CI ACNGT 1 cut(s) 28
Bst6I CTCTTC 1 cut(s) 260
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNSI RCATGY 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 63
BtsIMutI CAGTG 1 cut(s) 24
BveI ACCTGC 1 cut(s) 22
Cfr13I GGNCC 1 cut(s) 161
CviAII CATG 1 cut(s) 175
CviJI RGCY 1 cut(s) 76
CviKI_1 RGCY 1 cut(s) 76
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 161
FaeI CATG 1 cut(s) 178
FaiI YATR 8 cut(s) 47, 98, 108, 146, 166, 168, 176, 234
FaqI GGGAC 1 cut(s) 163
FatI CATG 1 cut(s) 174
FauNDI CATATG 1 cut(s) 166
FblI GTMKAC 2 cut(s) 68, 225
Fnu4HI GCNGC 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 77
GluI GCNGC 1 cut(s) 77
Hin1II CATG 1 cut(s) 178
HinfI GANTC 1 cut(s) 42
HphI GGTGA 1 cut(s) 123
Hpy166II GTNNAC 2 cut(s) 69, 226
Hpy188I TCNGA 1 cut(s) 220
Hpy8I GTNNAC 2 cut(s) 69, 226
HpyCH4III ACNGT 1 cut(s) 28
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
Hsp92II CATG 1 cut(s) 178
LpnPI CCDG 4 cut(s) 27, 57, 71, 195
Lsp1109I GCAGC 1 cut(s) 63
MaeIII GTNAC 1 cut(s) 170
MboII GAAGA 2 cut(s) 43, 127
MfeI CAATTG 1 cut(s) 192
MluCI AATT 1 cut(s) 192
MnlI CCTC 1 cut(s) 129
MunI CAATTG 1 cut(s) 192
Mva1269I GAATGC 2 cut(s) 10, 54
MwoI GCNNNNNNNGC 1 cut(s) 14
NdeI CATATG 1 cut(s) 166
NlaIII CATG 1 cut(s) 178
NspI RCATGY 1 cut(s) 178
PciI ACATGT 1 cut(s) 174
PctI GAATGC 2 cut(s) 10, 54
PfeI GAWTC 1 cut(s) 42
PkrI GCNGC 1 cut(s) 78
PscI ACATGT 1 cut(s) 174
PspPI GGNCC 1 cut(s) 161
SatI GCNGC 1 cut(s) 77
Sau96I GGNCC 1 cut(s) 161
SetI ASST 1 cut(s) 16
SinI GGWCC 1 cut(s) 161
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
Sse9I AATT 1 cut(s) 192
TaaI ACNGT 1 cut(s) 28
TaqI TCGA 1 cut(s) 209
TasI AATT 1 cut(s) 192
TfiI GAWTC 1 cut(s) 42
TscAI CASTG 1 cut(s) 31
TseI GCWGC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 161
XceI RCATGY 1 cut(s) 178
XmiI GTMKAC 2 cut(s) 68, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.