Rh1AG010700

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0006956
Physical Location & Seq
Forward (+)
1725574 .. 1726201
628 bp
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UTR
Exon/CDS
Intron
Rh1AG010700.1

Sequence Viewer

Length: 303 bp
ATGTTGTGTATGAAGAACTGCTCCTGTACAGCTTATGCAAATTCCAATATCAGGGAAGGAAGAAGTGGGTGCTTGCTGTGGTTAGGTGATCTGATTGACTTAAGAAATTTAACTGAGAAAGAGAATGGGCAAGATATCCATATAAGATTAGCTGCATCAGAGCAAGATAATGAAGAGACTAGTACCCAAATCAATGCTAAACCTGCTAAATCCAATGTGAAGAAAGTGAGAATCGTAGCTAGCACTCTTGTTTTATCTACTGGGCGTAGCTCTGCTCTTTTACGTTTGGAAGAAAGATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

100

Amino Acids

11.15

Weight (kDa)

8.43

Isoelectric Point (pI)

71.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 3 - 34 1.8e-11 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 211
AcsI RAATTY 2 cut(s) 40, 106
AfaI GTAC 2 cut(s) 28, 184
AfiI CCNNNNNNNGG 1 cut(s) 51
AflII CTTAAG 1 cut(s) 100
AhlI ACTAGT 1 cut(s) 179
AluBI AGCT 4 cut(s) 32, 152, 239, 270
AluI AGCT 4 cut(s) 32, 152, 239, 270
Alw26I GTCTC 1 cut(s) 170
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 2 cut(s) 40, 106
AsuHPI GGTGA 1 cut(s) 98
AsuNHI GCTAGC 1 cut(s) 239
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 291
BcoDI GTCTC 1 cut(s) 170
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 2 cut(s) 180, 240
BfrI CTTAAG 1 cut(s) 100
BfuAI ACCTGC 1 cut(s) 211
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 270
BmsI GCATC 1 cut(s) 164
BmtI GCTAGC 1 cut(s) 243
BmuI ACTGGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 265
BseLI CCNNNNNNNGG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 51
BsmAI GTCTC 1 cut(s) 170
Bsp1407I TGTACA 1 cut(s) 26
Bsp143I GATC 1 cut(s) 88
BspCNI CTCAG 1 cut(s) 106
BspMI ACCTGC 1 cut(s) 211
BspOI GCTAGC 1 cut(s) 243
BspTI CTTAAG 1 cut(s) 100
BsrGI TGTACA 1 cut(s) 26
BsrI ACTGG 1 cut(s) 265
BssMI GATC 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 168
BstAFI CTTAAG 1 cut(s) 100
BstAUI TGTACA 1 cut(s) 26
BstC8I GCNNGC 2 cut(s) 74, 241
BstDEI CTNAG 1 cut(s) 114
BstKTI GATC 1 cut(s) 91
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 1 cut(s) 88
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 139
BveI ACCTGC 1 cut(s) 211
Cac8I GCNNGC 2 cut(s) 74, 241
Csp6I GTAC 2 cut(s) 27, 183
CviJI RGCY 4 cut(s) 32, 152, 239, 270
CviKI_1 RGCY 4 cut(s) 32, 152, 239, 270
CviQI GTAC 2 cut(s) 27, 183
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 90
DpnII GATC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco32I GATATC 1 cut(s) 136
EcoRV GATATC 1 cut(s) 136
FaiI YATR 4 cut(s) 11, 36, 141, 143
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 2 cut(s) 180, 240
GluI GCNGC 1 cut(s) 153
HinfI GANTC 1 cut(s) 231
HphI GGTGA 1 cut(s) 98
Hpy188I TCNGA 2 cut(s) 93, 160
HpyAV CCTTC 1 cut(s) 50
HpyCH4IV ACGT 1 cut(s) 283
HpyCH4V TGCA 2 cut(s) 38, 155
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 283
Kzo9I GATC 1 cut(s) 88
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 4 cut(s) 37, 37, 216, 246
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 1 cut(s) 164
MaeI CTAG 2 cut(s) 180, 240
MaeII ACGT 1 cut(s) 283
MalI GATC 1 cut(s) 90
MboI GATC 1 cut(s) 88
MboII GAAGA 5 cut(s) 25, 72, 185, 232, 302
MluCI AATT 2 cut(s) 40, 106
MseI TTAA 2 cut(s) 101, 110
MspCI CTTAAG 1 cut(s) 100
MwoI GCNNNNNNNGC 1 cut(s) 203
NdeII GATC 1 cut(s) 88
NheI GCTAGC 1 cut(s) 239
PfeI GAWTC 1 cut(s) 231
PkrI GCNGC 1 cut(s) 154
RsaI GTAC 2 cut(s) 28, 184
RsaNI GTAC 2 cut(s) 27, 183
SaqAI TTAA 2 cut(s) 101, 110
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 88
SetI ASST 7 cut(s) 34, 88, 154, 205, 241, 272, 286
SfaNI GCATC 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 100
SmoI CTYRAG 1 cut(s) 100
SpeI ACTAGT 1 cut(s) 179
Sse9I AATT 2 cut(s) 40, 106
SspMI CTAG 2 cut(s) 180, 240
TaiI ACGT 1 cut(s) 286
TasI AATT 2 cut(s) 40, 106
TatI WGTACW 1 cut(s) 26
TfiI GAWTC 1 cut(s) 231
Tru1I TTAA 2 cut(s) 101, 110
Tru9I TTAA 2 cut(s) 101, 110
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 2 cut(s) 26, 186
Vha464I CTTAAG 1 cut(s) 100
XapI RAATTY 2 cut(s) 40, 106
XspI CTAG 2 cut(s) 180, 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.