Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0004496

Physical Location & Seq

Genomic Coordinates Forward (+)

15833602 .. 15834682

Gene Structure 1081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1053500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGCAGGAAGAAGAGGAAAACGCCACATTCTTCGTGGCGGTTCACGTCGGCGCGGGATACCACGCGCCATCCAACGAGAAAGCCCTCAAGTCCGCGGTCAAACGCGCTTGTCTCGCCGCTGGTTCAGTTCTCCGCAAGGGTTCTGGTAGATGCATAGATGCTGTTACTGCAGCTATTCAAGTCTTGGAGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asparaginase_2

Protein Analysis

65

Amino Acids

6.66

Weight (kDa)

6.71

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00590 AT4G00590
fragaria_vesca	FvH4_7g13631 FvH4_7g13631
malus_domestica	MD01G1053500.v1.1 MD01G1053600.v1.1 MD07G1141600.v1.1
prunus_persica	Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.8G034000_v2.0.a1
pyrus_communis	pycom01g07920 pycom07g14050
rosa_chinensis	RchiOBHm_Chr1g0353681 RchiOBHm_Chr1g0353691
rosa_laevigata	RLG00000028242 RLG00000028265 RLG00000029492 RLG00000029775
rosa_multiflora	Rmu_sc0001849.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301740
rosa_rugosa	Rorug01G0237100
rosa_samantha	Rh1AG249300 Rh1BG219400 Rh1CG099800 Rh1CG232000 Rh1DG107100 Rh1DG246400
rosa_wichuraiana	Rw1G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	53, 65, 95, 105
AciI	CCGC	6 cut(s)	38, 53, 93, 95, 117, 133
AgsI	TTSAA	1 cut(s)	179
AjiI	CACGTC	1 cut(s)	46
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw26I	GTCTC	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	170
AspLEI	GCGC	3 cut(s)	53, 67, 107
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	1 cut(s)	76
BciVI	GTATCC	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	168
BfuI	GTATCC	1 cut(s)	50
BisI	GCNGC	2 cut(s)	117, 171
BlsI	GCNGC	2 cut(s)	118, 172
BmgBI	CACGTC	1 cut(s)	46
BmsI	GCATC	2 cut(s)	140, 148
BpuEI	CTTGAG	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	182
Bsh1236I	CGCG	4 cut(s)	53, 65, 95, 105
BsmAI	GTCTC	1 cut(s)	116
BspACI	CCGC	6 cut(s)	38, 53, 93, 95, 117, 133
BspFNI	CGCG	4 cut(s)	53, 65, 95, 105
BspMAI	CTGCAG	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	93
Bst6I	CTCTTC	1 cut(s)	6
BstDSI	CCRYGG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	68
BstFNI	CGCG	4 cut(s)	53, 65, 95, 105
BstHHI	GCGC	3 cut(s)	53, 67, 107
BstMAI	GTCTC	1 cut(s)	116
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 167
BstSFI	CTRYAG	1 cut(s)	168
BstUI	CGCG	4 cut(s)	53, 65, 95, 105
BstV1I	GCAGC	1 cut(s)	182
BsuI	GTATCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	93
BtrI	CACGTC	1 cut(s)	46
BtsCI	GGATG	1 cut(s)	68
CfoI	GCGC	3 cut(s)	53, 67, 107
Cfr42I	CCGCGG	1 cut(s)	96
CviJI	RGCY	2 cut(s)	83, 173
CviKI_1	RGCY	2 cut(s)	83, 173
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
EcoT22I	ATGCAT	1 cut(s)	155
FaiI	YATR	1 cut(s)	155
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	2 cut(s)	117, 171
FokI	GGATG	1 cut(s)	55
Fsp4HI	GCNGC	2 cut(s)	117, 171
GlaI	GCGC	3 cut(s)	52, 66, 106
GluI	GCNGC	2 cut(s)	117, 171
HhaI	GCGC	3 cut(s)	53, 67, 107
Hin6I	GCGC	3 cut(s)	51, 65, 105
HinP1I	GCGC	3 cut(s)	51, 65, 105
Hpy166II	GTNNAC	1 cut(s)	43
Hpy8I	GTNNAC	1 cut(s)	43
Hpy99I	CGWCG	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	3 cut(s)	4, 153, 170
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 167
HpySE526I	ACGT	1 cut(s)	45
HspAI	GCGC	3 cut(s)	51, 65, 105
KspI	CCGCGG	1 cut(s)	96
LpnPI	CCDG	2 cut(s)	105, 129
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	2 cut(s)	140, 148
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	163
MboII	GAAGA	3 cut(s)	20, 22, 23
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	3 cut(s)	7, 95, 181
Mph1103I	ATGCAT	1 cut(s)	155
MspA1I	CMGCKG	2 cut(s)	95, 119
MvnI	CGCG	4 cut(s)	53, 65, 95, 105
MwoI	GCNNNNNNNGC	2 cut(s)	113, 167
NsiI	ATGCAT	1 cut(s)	155
PkrI	GCNGC	2 cut(s)	118, 172
PstI	CTGCAG	1 cut(s)	172
SacII	CCGCGG	1 cut(s)	96
SatI	GCNGC	2 cut(s)	117, 171
SetI	ASST	2 cut(s)	48, 175
SfaNI	GCATC	2 cut(s)	140, 148
SfcI	CTRYAG	1 cut(s)	168
Sfr303I	CCGCGG	1 cut(s)	96
SgrBI	CCGCGG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
SsiI	CCGC	6 cut(s)	38, 53, 93, 95, 117, 133
TaiI	ACGT	1 cut(s)	48
TauI	GCSGC	1 cut(s)	119
TseI	GCWGC	1 cut(s)	170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	31
Zsp2I	ATGCAT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.