Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004496

Physical Location & Seq

Genomic Coordinates Forward (+)

3146481 .. 3149057

Gene Structure 2577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G034000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGCTTGTTTTGACAGGTGTGATTTTGGGATTGAACAATTTACAGGGGAGACTCTGCCGAATTTTCGGTGGAAGTCAAGGCAAAAATGAAAGTAAGTTTGTAACTAGAAGGCCATGTGTCGATCACGAACAAGGTTCGGCTCGAATTCCAACAGGGAATTTGGAGGATTGCATCATGGACACTGTTGGAGTTATTTGTGTGGACACCGAAGGACAAATACCTTCTGGTGCCTTAAGTGGGGGTATTGCACTGAAGGTTAGTGGGCGAGTGGGATTAGCAGCAATGCATGGTTCAGGCTGTTGGGCATCCTCCAAAGGTTTTTTTGTGGCGCCATGTATAGTTGGCTGTTGTGTAAGTGGTGCTGGAGAATATCTAATGAAAGGATTTGCAGCTCGGGAGTGCTGCGTCTCTTTGTCACTTTCACAGGCAGGTCCTGCCTCTGCTTGCATGAAAGTTTTGCGCTCGGTTGTTCAAGAGAGTAATCACAATTGTACTGATAGAAGTGCTGGAATTCTACTTGTGCAAGCTGATGATCCCACAACAGTTTCAGGAAGTTCTCCAAAGTTGAAAGCCATAGAGATTGCAGCTGCTTTCTCTTCCTTATCCTTTGGAGTAGGATACTTTGGAAGCTCTATGGAGCGGCCCAAGGTAATTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asparaginase_2

Protein Analysis

220

Amino Acids

22.61

Weight (kDa)

8.27

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00590 AT4G00590
fragaria_vesca	FvH4_7g13631 FvH4_7g13631
malus_domestica	MD01G1053500.v1.1 MD01G1053600.v1.1 MD07G1141600.v1.1
prunus_persica	Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.8G034000_v2.0.a1
pyrus_communis	pycom01g07920 pycom07g14050
rosa_chinensis	RchiOBHm_Chr1g0353681 RchiOBHm_Chr1g0353691
rosa_laevigata	RLG00000028242 RLG00000028265 RLG00000029492 RLG00000029775
rosa_multiflora	Rmu_sc0001849.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301740
rosa_rugosa	Rorug01G0237100
rosa_samantha	Rh1AG249300 Rh1BG219400 Rh1CG099800 Rh1CG232000 Rh1DG107100 Rh1DG246400
rosa_wichuraiana	Rw1G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	419
AccB1I	GGYRCC	2 cut(s)	227, 328
AccBSI	CCGCTC	1 cut(s)	640
AciI	CCGC	1 cut(s)	640
AclWI	GGATC	1 cut(s)	527
AcsI	RAATTY	4 cut(s)	60, 144, 157, 510
AcuI	CTGAAG	1 cut(s)	272
AcyI	GRCGYC	1 cut(s)	329
AfaI	GTAC	1 cut(s)	493
AfiI	CCNNNNNNNGG	1 cut(s)	237
AflII	CTTAAG	1 cut(s)	232
AgsI	TTSAA	3 cut(s)	34, 473, 568
AluBI	AGCT	4 cut(s)	392, 527, 587, 630
AluI	AGCT	4 cut(s)	392, 527, 587, 630
Alw26I	GTCTC	2 cut(s)	43, 412
AlwI	GGATC	1 cut(s)	527
AlwNI	CAGNNNCTG	1 cut(s)	434
Ama87I	CYCGRG	1 cut(s)	393
AoxI	GGCC	2 cut(s)	110, 641
ApeKI	GCWGC	5 cut(s)	278, 389, 402, 584, 587
ApoI	RAATTY	4 cut(s)	60, 144, 157, 510
AspLEI	GCGC	2 cut(s)	331, 462
AspS9I	GGNCC	2 cut(s)	431, 642
AvaI	CYCGRG	1 cut(s)	393
AvaII	GGWCC	1 cut(s)	431
BanI	GGYRCC	2 cut(s)	227, 328
BarI	GAAGNNNNNNTAC	2 cut(s)	201, 233
BbvI	GCAGC	5 cut(s)	290, 389, 401, 574, 596
BciVI	GTATCC	1 cut(s)	611
BcoDI	GTCTC	2 cut(s)	43, 412
BfaI	CTAG	1 cut(s)	105
BfoI	RGCGCY	1 cut(s)	332
BfrI	CTTAAG	1 cut(s)	232
BfuAI	ACCTGC	1 cut(s)	419
BfuI	GTATCC	1 cut(s)	611
BisI	GCNGC	6 cut(s)	279, 390, 403, 585, 588, 641
BlsI	GCNGC	6 cut(s)	280, 391, 404, 586, 589, 642
Bme18I	GGWCC	1 cut(s)	431
BmeT110I	CYCGRG	1 cut(s)	393
BmgT120I	GGNCC	2 cut(s)	431, 642
BmiI	GGNNCC	2 cut(s)	229, 330
BmsI	GCATC	2 cut(s)	180, 314
BpmI	CTGGAG	1 cut(s)	384
BsaHI	GRCGYC	1 cut(s)	329
BsaJI	CCNNGG	1 cut(s)	645
Bsc4I	CCNNNNNNNGG	1 cut(s)	237
Bse3DI	GCAATG	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	645
BseGI	GGATG	1 cut(s)	305
BseLI	CCNNNNNNNGG	1 cut(s)	237
BseMI	GCAATG	1 cut(s)	288
BseXI	GCAGC	5 cut(s)	290, 389, 401, 574, 596
BshFI	GGCC	2 cut(s)	112, 643
BshNI	GGYRCC	2 cut(s)	227, 328
BsiHKCI	CYCGRG	1 cut(s)	393
BslI	CCNNNNNNNGG	1 cut(s)	237
BsmAI	GTCTC	2 cut(s)	43, 412
BsmBI	CGTCTC	1 cut(s)	412
BsnI	GGCC	2 cut(s)	112, 643
BsoBI	CYCGRG	1 cut(s)	393
Bsp143I	GATC	2 cut(s)	121, 532
BspACI	CCGC	1 cut(s)	640
BspANI	GGCC	2 cut(s)	112, 643
BspLI	GGNNCC	2 cut(s)	229, 330
BspMI	ACCTGC	1 cut(s)	419
BspPI	GGATC	1 cut(s)	527
BspT107I	GGYRCC	2 cut(s)	227, 328
BspTI	CTTAAG	1 cut(s)	232
BsrBI	CCGCTC	1 cut(s)	640
BsrDI	GCAATG	1 cut(s)	288
BssECI	CCNNGG	1 cut(s)	645
BssMI	GATC	2 cut(s)	121, 532
BssNI	GRCGYC	1 cut(s)	329
BssT1I	CCWWGG	1 cut(s)	645
Bst4CI	ACNGT	2 cut(s)	184, 544
Bst6I	CTCTTC	1 cut(s)	601
BstACI	GRCGYC	1 cut(s)	329
BstAFI	CTTAAG	1 cut(s)	232
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	445, 525
BstF5I	GGATG	1 cut(s)	305
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	2 cut(s)	331, 462
BstKTI	GATC	2 cut(s)	124, 535
BstMAI	GTCTC	2 cut(s)	43, 412
BstMBI	GATC	2 cut(s)	121, 532
BstMWI	GCNNNNNNNGC	1 cut(s)	434
BstV1I	GCAGC	5 cut(s)	290, 389, 401, 574, 596
BsuI	GTATCC	1 cut(s)	611
BsuRI	GGCC	2 cut(s)	112, 643
BtsCI	GGATG	1 cut(s)	305
BtsIMutI	CAGTG	2 cut(s)	180, 248
BveI	ACCTGC	1 cut(s)	419
Cac8I	GCNNGC	2 cut(s)	445, 525
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	2 cut(s)	331, 462
Cfr13I	GGNCC	2 cut(s)	431, 642
CseI	GACGC	1 cut(s)	394
Csp6I	GTAC	1 cut(s)	492
CviAII	CATG	5 cut(s)	114, 175, 287, 333, 448
CviQI	GTAC	1 cut(s)	492
DinI	GGCGCC	1 cut(s)	330
DpnI	GATC	2 cut(s)	123, 534
DpnII	GATC	2 cut(s)	121, 532
Eam1104I	CTCTTC	1 cut(s)	601
EarI	CTCTTC	1 cut(s)	601
Eco130I	CCWWGG	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	431
Eco57I	CTGAAG	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	393
EcoO109I	RGGNCCY	1 cut(s)	431
EcoRI	GAATTC	2 cut(s)	144, 510
EcoT14I	CCWWGG	1 cut(s)	645
EcoT22I	ATGCAT	1 cut(s)	288
EgeI	GGCGCC	1 cut(s)	330
EheI	GGCGCC	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	645
Esp3I	CGTCTC	1 cut(s)	412
FaeI	CATG	5 cut(s)	117, 178, 290, 336, 451
FaiI	YATR	8 cut(s)	115, 176, 288, 334, 338, 449, 575, 635
FatI	CATG	5 cut(s)	113, 174, 286, 332, 447
Fnu4HI	GCNGC	6 cut(s)	279, 390, 403, 585, 588, 641
FokI	GGATG	1 cut(s)	292
Fsp4HI	GCNGC	6 cut(s)	279, 390, 403, 585, 588, 641
FspBI	CTAG	1 cut(s)	105
GlaI	GCGC	2 cut(s)	330, 461
GluI	GCNGC	6 cut(s)	279, 390, 403, 585, 588, 641
GsuI	CTGGAG	1 cut(s)	384
HaeII	RGCGCY	1 cut(s)	332
HaeIII	GGCC	2 cut(s)	112, 643
HgaI	GACGC	1 cut(s)	394
HhaI	GCGC	2 cut(s)	331, 462
Hin1I	GRCGYC	1 cut(s)	329
Hin1II	CATG	5 cut(s)	117, 178, 290, 336, 451
Hin6I	GCGC	2 cut(s)	329, 460
HinP1I	GCGC	2 cut(s)	329, 460
HinfI	GANTC	1 cut(s)	51
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188I	TCNGA	1 cut(s)	659
Hpy188III	TCNNGA	4 cut(s)	125, 395, 473, 549
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	4 cut(s)	102, 203, 231, 247
HpyCH4III	ACNGT	2 cut(s)	184, 544
HpyCH4V	TGCA	7 cut(s)	171, 248, 286, 389, 447, 523, 584
HpyF10VI	GCNNNNNNNGC	1 cut(s)	434
Hsp92I	GRCGYC	1 cut(s)	329
Hsp92II	CATG	5 cut(s)	117, 178, 290, 336, 451
HspAI	GCGC	2 cut(s)	329, 460
KasI	GGCGCC	1 cut(s)	328
Kzo9I	GATC	2 cut(s)	121, 532
LmnI	GCTCC	1 cut(s)	637
Lsp1109I	GCAGC	5 cut(s)	290, 389, 401, 574, 596
LweI	GCATC	2 cut(s)	180, 314
MaeI	CTAG	1 cut(s)	105
MaeIII	GTNAC	2 cut(s)	100, 414
MalI	GATC	2 cut(s)	123, 534
MbiI	CCGCTC	1 cut(s)	640
MboI	GATC	2 cut(s)	121, 532
MboII	GAAGA	1 cut(s)	588
MfeI	CAATTG	1 cut(s)	487
MluCI	AATT	7 cut(s)	37, 60, 144, 157, 487, 510, 651
Mly113I	GGCGCC	1 cut(s)	329
MlyI	GAGTC	1 cut(s)	45
MmeI	TCCRAC	2 cut(s)	166, 173
MnlI	CCTC	3 cut(s)	157, 319, 448
Mph1103I	ATGCAT	1 cut(s)	288
MseI	TTAA	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	587
MspCI	CTTAAG	1 cut(s)	232
MunI	CAATTG	1 cut(s)	487
MwoI	GCNNNNNNNGC	1 cut(s)	434
NarI	GGCGCC	1 cut(s)	329
NdeII	GATC	2 cut(s)	121, 532
NlaIII	CATG	5 cut(s)	117, 178, 290, 336, 451
NlaIV	GGNNCC	2 cut(s)	229, 330
NmuCI	GTSAC	1 cut(s)	414
NsiI	ATGCAT	1 cut(s)	288
PkrI	GCNGC	6 cut(s)	280, 391, 404, 586, 589, 642
PleI	GAGTC	1 cut(s)	45
PluTI	GGCGCC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	45
PpuMI	RGGWCCY	1 cut(s)	431
Psp5II	RGGWCCY	1 cut(s)	431
PspN4I	GGNNCC	2 cut(s)	229, 330
PspPI	GGNCC	2 cut(s)	431, 642
PspPPI	RGGWCCY	1 cut(s)	431
PstNI	CAGNNNCTG	1 cut(s)	434
PvuII	CAGCTG	1 cut(s)	587
RsaI	GTAC	1 cut(s)	493
RsaNI	GTAC	1 cut(s)	492
SaqAI	TTAA	1 cut(s)	233
SatI	GCNGC	6 cut(s)	279, 390, 403, 585, 588, 641
Sau3AI	GATC	2 cut(s)	121, 532
Sau96I	GGNCC	2 cut(s)	431, 642
SchI	GAGTC	1 cut(s)	45
SfaNI	GCATC	2 cut(s)	180, 314
SfoI	GGCGCC	1 cut(s)	330
SinI	GGWCC	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
Sse9I	AATT	7 cut(s)	37, 60, 144, 157, 487, 510, 651
SsiI	CCGC	1 cut(s)	640
SspDI	GGCGCC	1 cut(s)	328
SspMI	CTAG	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	645
TaaI	ACNGT	2 cut(s)	184, 544
TaqI	TCGA	2 cut(s)	120, 142
TasI	AATT	7 cut(s)	37, 60, 144, 157, 487, 510, 651
TatI	WGTACW	1 cut(s)	491
TauI	GCSGC	1 cut(s)	643
Tru1I	TTAA	1 cut(s)	233
Tru9I	TTAA	1 cut(s)	233
TscAI	CASTG	2 cut(s)	187, 255
TseFI	GTSAC	1 cut(s)	414
TseI	GCWGC	5 cut(s)	278, 389, 402, 584, 587
Tsp45I	GTSAC	1 cut(s)	414
TspDTI	ATGAA	3 cut(s)	102, 392, 464
TspRI	CASTG	2 cut(s)	187, 255
Vha464I	CTTAAG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	431
XapI	RAATTY	4 cut(s)	60, 144, 157, 510
XspI	CTAG	1 cut(s)	105
Zsp2I	ATGCAT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.