Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001849.1

Orthogroup ID

OG0004496

Physical Location & Seq

Genomic Coordinates Reverse (-)

6894 .. 8210

Gene Structure 1317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001849.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atggctgctgccgctaaacaagtacaacagcaactactagaagatgaaaacgacagattcttcgtcgccgttcatgtcggcgctggataccacgcgccttccaacgagaaggccctcaggtccgccatgaaacgcgcctgcctcgccgccgcttccattctccgccagggctctggtaggtgcatcgatgctgtcactgcagctattcaagtgttggaggtcatagattctagggttggtgtacgtatttcatcacaaaacataactttgactaaggtcacagatcctacaggcatggatggatcatatgaatcttcaatgtgtaatggaagtgactgtaatgaaatgcaatataagggagttcggtatgataagttgtctacagaagatcttagaaggcaggagtttaagactgtggaggaagctgaatcattttacaatgcttatgcaaaggctatgggttttggtgttagaaacgactacaagagattaagtatacgcataacagggagagtcacttcattgcggttggtttgttctgctcaagggaaaagtagtacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asparaginase_2

Protein Analysis

187

Amino Acids

20.51

Weight (kDa)

8.81

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00590 AT4G00590
fragaria_vesca	FvH4_7g13631 FvH4_7g13631
malus_domestica	MD01G1053500.v1.1 MD01G1053600.v1.1 MD07G1141600.v1.1
prunus_persica	Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.8G034000_v2.0.a1
pyrus_communis	pycom01g07920 pycom07g14050
rosa_chinensis	RchiOBHm_Chr1g0353681 RchiOBHm_Chr1g0353691
rosa_laevigata	RLG00000028242 RLG00000028265 RLG00000029492 RLG00000029775
rosa_multiflora	Rmu_sc0001849.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301740
rosa_rugosa	Rorug01G0237100
rosa_samantha	Rh1AG249300 Rh1BG219400 Rh1CG099800 Rh1CG232000 Rh1DG107100 Rh1DG246400
rosa_wichuraiana	Rw1G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	380, 496
AccII	CGCG	2 cut(s)	95, 135
AciI	CCGC	6 cut(s)	12, 123, 147, 150, 163, 526
AclWI	GGATC	2 cut(s)	278, 310
AfaI	GTAC	3 cut(s)	24, 243, 559
AgsI	TTSAA	2 cut(s)	209, 318
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	2 cut(s)	203, 425
AluI	AGCT	2 cut(s)	203, 425
AlwI	GGATC	2 cut(s)	278, 310
AoxI	GGCC	1 cut(s)	111
ApeKI	GCWGC	3 cut(s)	5, 8, 200
ArsI	GACNNNNNNTTYG	2 cut(s)	44, 76
AspLEI	GCGC	3 cut(s)	83, 97, 137
AspS9I	GGNCC	2 cut(s)	112, 120
AvaII	GGWCC	1 cut(s)	120
AxyI	CCTNAGG	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	173
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	1 cut(s)	293
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	167
BciVI	GTATCC	1 cut(s)	80
BfaI	CTAG	2 cut(s)	38, 231
BfmI	CTRYAG	3 cut(s)	198, 288, 381
BfoI	RGCGCY	1 cut(s)	84
BfuI	GTATCC	1 cut(s)	80
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	6 cut(s)	6, 9, 12, 147, 150, 201
BlsI	GCNGC	6 cut(s)	7, 10, 13, 148, 151, 202
Bme1390I	CCNGG	1 cut(s)	167
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	2 cut(s)	112, 120
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	2 cut(s)	178, 192
BoxI	GACNNNNGTC	1 cut(s)	275
BpuEI	CTTGAG	1 cut(s)	528
Bsa29I	ATCGAT	1 cut(s)	186
BsaAI	YACGTR	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	166
Bse21I	CCTNAGG	1 cut(s)	116
Bse3DI	GCAATG	1 cut(s)	521
BseBI	CCWGG	1 cut(s)	167
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	304
BseMI	GCAATG	1 cut(s)	521
BseMII	CTCAG	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	212
Bsh1236I	CGCG	2 cut(s)	95, 135
BshFI	GGCC	1 cut(s)	113
BshVI	ATCGAT	1 cut(s)	186
BsnI	GGCC	1 cut(s)	113
Bsp1286I	GDGCHC	1 cut(s)	173
Bsp143I	GATC	3 cut(s)	283, 302, 388
BspACI	CCGC	6 cut(s)	12, 123, 147, 150, 163, 526
BspANI	GGCC	1 cut(s)	113
BspCNI	CTCAG	1 cut(s)	129
BspDI	ATCGAT	1 cut(s)	186
BspFNI	CGCG	2 cut(s)	95, 135
BspMAI	CTGCAG	1 cut(s)	202
BspPI	GGATC	2 cut(s)	278, 310
BsrDI	GCAATG	1 cut(s)	521
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	3 cut(s)	283, 302, 388
BssNAI	GTATAC	1 cut(s)	497
Bst1107I	GTATAC	1 cut(s)	497
Bst2UI	CCWGG	1 cut(s)	167
Bst4CI	ACNGT	2 cut(s)	338, 415
BstBAI	YACGTR	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	139
BstDEI	CTNAG	3 cut(s)	116, 273, 392
BstF5I	GGATG	1 cut(s)	304
BstFNI	CGCG	2 cut(s)	95, 135
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	3 cut(s)	83, 97, 137
BstKTI	GATC	3 cut(s)	286, 305, 391
BstMBI	GATC	3 cut(s)	283, 302, 388
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 143, 197
BstNI	CCWGG	1 cut(s)	167
BstPAI	GACNNNNGTC	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	165
BstSFI	CTRYAG	3 cut(s)	198, 288, 381
BstSNI	TACGTA	1 cut(s)	245
BstUI	CGCG	2 cut(s)	95, 135
BstV1I	GCAGC	1 cut(s)	212
BstX2I	RGATCY	2 cut(s)	283, 388
BstXI	CCANNNNNNTGG	1 cut(s)	173
BstYI	RGATCY	2 cut(s)	283, 388
BstZ17I	GTATAC	1 cut(s)	497
Bsu15I	ATCGAT	1 cut(s)	186
Bsu36I	CCTNAGG	1 cut(s)	116
BsuI	GTATCC	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	113
BsuTUI	ATCGAT	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	304
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	139
CfoI	GCGC	3 cut(s)	83, 97, 137
Cfr13I	GGNCC	2 cut(s)	112, 120
ClaI	ATCGAT	1 cut(s)	186
Csp6I	GTAC	3 cut(s)	23, 242, 558
CviAII	CATG	4 cut(s)	74, 127, 295, 561
CviJI	RGCY	6 cut(s)	5, 113, 171, 203, 425, 455
CviKI_1	RGCY	6 cut(s)	5, 113, 171, 203, 425, 455
CviQI	GTAC	3 cut(s)	23, 242, 558
DdeI	CTNAG	3 cut(s)	116, 273, 392
DpnI	GATC	3 cut(s)	285, 304, 390
DpnII	GATC	3 cut(s)	283, 302, 388
EciI	GGCGGA	2 cut(s)	112, 152
Eco105I	TACGTA	1 cut(s)	245
Eco24I	GRGCYC	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	120
Eco81I	CCTNAGG	1 cut(s)	116
EcoO109I	RGGNCCY	1 cut(s)	112
EcoRII	CCWGG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	173
FaeI	CATG	4 cut(s)	77, 130, 298, 564
FatI	CATG	4 cut(s)	73, 126, 294, 560
FauNDI	CATATG	1 cut(s)	307
FblI	GTMKAC	2 cut(s)	380, 496
Fnu4HI	GCNGC	6 cut(s)	6, 9, 12, 147, 150, 201
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	6 cut(s)	6, 9, 12, 147, 150, 201
FspBI	CTAG	2 cut(s)	38, 231
GlaI	GCGC	3 cut(s)	82, 96, 136
GluI	GCNGC	6 cut(s)	6, 9, 12, 147, 150, 201
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	113
HhaI	GCGC	3 cut(s)	83, 97, 137
Hin1II	CATG	4 cut(s)	77, 130, 298, 564
Hin6I	GCGC	3 cut(s)	81, 95, 135
HinP1I	GCGC	3 cut(s)	81, 95, 135
HinfI	GANTC	5 cut(s)	57, 227, 311, 428, 513
Hpy166II	GTNNAC	3 cut(s)	242, 381, 497
Hpy8I	GTNNAC	3 cut(s)	242, 381, 497
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	3 cut(s)	103, 108, 390
HpyCH4III	ACNGT	2 cut(s)	338, 415
HpyCH4IV	ACGT	1 cut(s)	244
HpyCH4V	TGCA	4 cut(s)	183, 200, 349, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 143, 197
HpyF3I	CTNAG	3 cut(s)	116, 273, 392
HpySE526I	ACGT	1 cut(s)	244
Hsp92II	CATG	4 cut(s)	77, 130, 298, 564
HspAI	GCGC	3 cut(s)	81, 95, 135
Kzo9I	GATC	3 cut(s)	283, 302, 388
LpnPI	CCDG	9 cut(s)	69, 103, 151, 152, 159, 179, 276, 386, 492
Lsp1109I	GCAGC	1 cut(s)	212
LweI	GCATC	2 cut(s)	178, 192
MaeI	CTAG	2 cut(s)	38, 231
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	4 cut(s)	193, 277, 332, 514
MalI	GATC	3 cut(s)	285, 304, 390
MboI	GATC	3 cut(s)	283, 302, 388
MboII	GAAGA	4 cut(s)	52, 53, 306, 398
MflI	RGATCY	2 cut(s)	283, 388
MhlI	GDGCHC	1 cut(s)	173
MlyI	GAGTC	1 cut(s)	522
MmeI	TCCRAC	2 cut(s)	126, 195
MnlI	CCTC	4 cut(s)	125, 152, 211, 412
MseI	TTAA	2 cut(s)	408, 491
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
MvnI	CGCG	2 cut(s)	95, 135
MwoI	GCNNNNNNNGC	3 cut(s)	11, 143, 197
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	3 cut(s)	283, 302, 388
NlaIII	CATG	4 cut(s)	77, 130, 298, 564
NmuCI	GTSAC	4 cut(s)	193, 277, 332, 514
PfeI	GAWTC	4 cut(s)	57, 227, 311, 428
PkrI	GCNGC	6 cut(s)	7, 10, 13, 148, 151, 202
PleI	GAGTC	1 cut(s)	521
PpsI	GAGTC	1 cut(s)	521
Ppu21I	YACGTR	1 cut(s)	245
PshAI	GACNNNNGTC	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspPI	GGNCC	2 cut(s)	112, 120
PstI	CTGCAG	1 cut(s)	202
PsuI	RGATCY	2 cut(s)	283, 388
RsaI	GTAC	3 cut(s)	24, 243, 559
RsaNI	GTAC	3 cut(s)	23, 242, 558
SaqAI	TTAA	2 cut(s)	408, 491
SatI	GCNGC	6 cut(s)	6, 9, 12, 147, 150, 201
Sau3AI	GATC	3 cut(s)	283, 302, 388
Sau96I	GGNCC	2 cut(s)	112, 120
SchI	GAGTC	1 cut(s)	522
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	173
SetI	ASST	7 cut(s)	122, 182, 205, 222, 247, 279, 427
SfaNI	GCATC	2 cut(s)	178, 192
SfcI	CTRYAG	3 cut(s)	198, 288, 381
SinI	GGWCC	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	543
SmoI	CTYRAG	1 cut(s)	543
SnaBI	TACGTA	1 cut(s)	245
SsiI	CCGC	6 cut(s)	12, 123, 147, 150, 163, 526
SspMI	CTAG	2 cut(s)	38, 231
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	2 cut(s)	338, 415
TaiI	ACGT	1 cut(s)	247
TaqI	TCGA	1 cut(s)	186
TatI	WGTACW	2 cut(s)	22, 557
TauI	GCSGC	3 cut(s)	14, 149, 152
TfiI	GAWTC	4 cut(s)	57, 227, 311, 428
Tru1I	TTAA	2 cut(s)	408, 491
Tru9I	TTAA	2 cut(s)	408, 491
TscAI	CASTG	1 cut(s)	202
TseFI	GTSAC	4 cut(s)	193, 277, 332, 514
TseI	GCWGC	3 cut(s)	5, 8, 200
Tsp45I	GTSAC	4 cut(s)	193, 277, 332, 514
TspDTI	ATGAA	7 cut(s)	60, 62, 143, 240, 324, 357, 510
TspRI	CASTG	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	120
XmiI	GTMKAC	2 cut(s)	380, 496
XspI	CTAG	2 cut(s)	38, 231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.