Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004496

Physical Location & Seq

Genomic Coordinates Reverse (-)

15879017 .. 15882293

Gene Structure 3277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g14050.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGCCGCCGCGAACCAAATGCAAGTAGAAGACGAAAACGCCACGTTCTTCGTGGCGGTTCACGTCGGCGCTGGATACCACGCGCCATCTAACGAGAAAGCCCTCAAGTCCGCCGTCAAACGCGCTTGTCTAGCCGCCGGTTCAATCCTCCGCAAGGGTTCTGGTAGATGCATAGATGCTGTTACTGCAGCTATTCAGGTCTTGGAGGATGATCCAAGCACGAATGCAGGCAGAGGCTCCAATTTGACTGAAGATGGTTGTGTAGAATGCGATGCCAGTATTATGGACGGAAATTCTGGAGTATTTGGAGCTGTTGGAGCAATTCCAGGTGTCAGAAACCCCATCCAGGTCGCTGCTTTATTGGCCAAGGAGCAAATGATGGGATCCCCTCTGTTGGGCCGAATACCTCCCATCTTCCTGGTTGGTGAAGGTGCCCGTGCGTGGGCAAAGTCCAAGGGCCTTGCTTTGGCAGCAAGTACCACAGCCGATGATGAGTGGCTGGTGACAGAAAGAGCAAAAGCACAATGGAGAAAGTACAAAGCCATGGTTGATGATGCAAGAGCAAAGACAGAAAATTCTGATTCTAGACTTTCTTGTAGTCCTCAAGAGACCGCTGGAATGTCAGAATCAGAAGCTCAACCATGCGACTATTTGAAGCATAATGGAGCTGAAGAGGATTGCATCATGGATACTGTTGGTGTTATTTGTGTGGATGCTGAAGGACAAATAGCATCTGGTGCCTCAAGTGGGGGAATTGCACTGAAGGTTGGTGGGCGTGTGGGATTAGCAGCTATGCACGGTGCAGGCTGTTGGGCATCCTCCAAAGGTGTTTTTGGGGCTCCATGTATAGTTGGCTGTTGTGTAAGTGGTGCCGGAGAATATCTAATGAAAGGATTTGCAGCTCGTGAGTCCTGTGTCTCTTTGTCAGTTTCACAGGCAGGCCCTGCCTCTGCTTGCATGAAAGTTTTACGTTCTGTTGTTCAAGAGAGTAATAAAAATTGTACTGATAGAAGTGCCGGAATTCTACTTGTGCAAGCTGATGCTCCTATAATGGTTGCAGGAAGTTCTCCAAAGTTGAAAGCTGTAGAGATTGCAGCTGCTTACACTTCTTTATCCTTTGGAATAGGATATTTTGGGAGCGCCATGGAGCGGCCCAAGGTTTCAATTCTTAGGAGTACAAAATTGCAAAGCAAAACTGGAGTGGACCATTTTGAAGCACGAATTGATCTTTCAGGTGGAAAGCTGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asparaginase_2

Protein Analysis

417

Amino Acids

42.87

Weight (kDa)

6.26

Isoelectric Point (pI)

35.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00590 AT4G00590
fragaria_vesca	FvH4_7g13631 FvH4_7g13631
malus_domestica	MD01G1053500.v1.1 MD01G1053600.v1.1 MD07G1141600.v1.1
prunus_persica	Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.8G034000_v2.0.a1
pyrus_communis	pycom01g07920 pycom07g14050
rosa_chinensis	RchiOBHm_Chr1g0353681 RchiOBHm_Chr1g0353691
rosa_laevigata	RLG00000028242 RLG00000028265 RLG00000029492 RLG00000029775
rosa_multiflora	Rmu_sc0001849.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301740
rosa_rugosa	Rorug01G0237100
rosa_samantha	Rh1AG249300 Rh1BG219400 Rh1CG099800 Rh1CG232000 Rh1DG107100 Rh1DG246400
rosa_wichuraiana	Rw1G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	431, 737, 869
AccBSI	CCGCTC	1 cut(s)	1150
AccII	CGCG	3 cut(s)	11, 83, 123
AciI	CCGC	8 cut(s)	6, 9, 56, 111, 135, 151, 612, 1150
AclWI	GGATC	3 cut(s)	206, 378, 391
AcoI	YGGCCR	2 cut(s)	3, 363
AcsI	RAATTY	3 cut(s)	292, 574, 1020
AcuI	CTGAAG	4 cut(s)	270, 690, 738, 782
AfaI	GTAC	4 cut(s)	478, 536, 1003, 1177
AfiI	CCNNNNNNNGG	9 cut(s)	154, 346, 394, 395, 441, 442, 466, 747, 1149
AgsI	TTSAA	6 cut(s)	144, 655, 983, 1078, 1164, 1214
AjiI	CACGTC	1 cut(s)	64
AjnI	CCWGG	3 cut(s)	325, 345, 417
Alw26I	GTCTC	2 cut(s)	602, 922
AlwI	GGATC	3 cut(s)	206, 378, 391
AlwNI	CAGNNNCTG	1 cut(s)	944
AoxI	GGCC	6 cut(s)	3, 363, 397, 457, 940, 1151
ApeKI	GCWGC	7 cut(s)	188, 353, 470, 788, 899, 1094, 1097
ApoI	RAATTY	3 cut(s)	292, 574, 1020
AspLEI	GCGC	4 cut(s)	71, 85, 125, 1142
AspS9I	GGNCC	5 cut(s)	397, 457, 941, 1152, 1204
AsuHPI	GGTGA	2 cut(s)	437, 514
AvaII	GGWCC	1 cut(s)	1204
BaeGI	GKGCMC	1 cut(s)	436
BalI	TGGCCA	1 cut(s)	365
BamHI	GGATCC	1 cut(s)	383
BanI	GGYRCC	3 cut(s)	431, 737, 869
BanII	GRGCYC	1 cut(s)	841
BauI	CACGAG	1 cut(s)	903
BbsI	GAAGAC	1 cut(s)	36
BbvI	GCAGC	7 cut(s)	200, 340, 482, 800, 911, 1084, 1106
BccI	CCATC	5 cut(s)	94, 248, 350, 373, 419
BceAI	ACGGC	1 cut(s)	98
BcgI	CGANNNNNNTGC	1 cut(s)	35
BciT130I	CCWGG	3 cut(s)	327, 347, 419
BciVI	GTATCC	2 cut(s)	68, 682
BcoDI	GTCTC	2 cut(s)	602, 922
BfaI	CTAG	2 cut(s)	131, 585
BfmI	CTRYAG	2 cut(s)	186, 1083
BfoI	RGCGCY	2 cut(s)	72, 1143
BfuI	GTATCC	2 cut(s)	68, 682
Bme1390I	CCNGG	3 cut(s)	327, 347, 419
Bme18I	GGWCC	1 cut(s)	1204
BmgBI	CACGTC	1 cut(s)	64
BmgT120I	GGNCC	5 cut(s)	397, 457, 941, 1152, 1204
BmiI	GGNNCC	6 cut(s)	238, 385, 433, 739, 840, 871
BmrFI	CCNGG	3 cut(s)	327, 347, 419
BmsI	GCATC	9 cut(s)	158, 166, 262, 544, 690, 703, 740, 824, 1030
BpiI	GAAGAC	1 cut(s)	36
BpmI	CTGGAG	2 cut(s)	318, 1218
BpuEI	CTTGAG	3 cut(s)	89, 588, 727
BsaI	GGTCTC	1 cut(s)	602
BsaJI	CCNNGG	5 cut(s)	366, 453, 543, 1143, 1155
Bsc4I	CCNNNNNNNGG	9 cut(s)	154, 346, 394, 395, 441, 442, 466, 747, 1149
Bse118I	RCCGGY	1 cut(s)	137
Bse1I	ACTGG	2 cut(s)	276, 1201
BseBI	CCWGG	3 cut(s)	327, 347, 419
BseDI	CCNNGG	5 cut(s)	366, 453, 543, 1143, 1155
BseGI	GGATG	4 cut(s)	214, 342, 718, 815
BseLI	CCNNNNNNNGG	9 cut(s)	154, 346, 394, 395, 441, 442, 466, 747, 1149
BseNI	ACTGG	2 cut(s)	276, 1201
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	7 cut(s)	200, 340, 482, 800, 911, 1084, 1106
BsgI	GTGCAG	1 cut(s)	822
Bsh1236I	CGCG	3 cut(s)	11, 83, 123
BshFI	GGCC	6 cut(s)	5, 365, 399, 459, 942, 1153
BshNI	GGYRCC	3 cut(s)	431, 737, 869
BsiSI	CCGG	3 cut(s)	138, 873, 1017
BslI	CCNNNNNNNGG	9 cut(s)	154, 346, 394, 395, 441, 442, 466, 747, 1149
BsmAI	GTCTC	2 cut(s)	602, 922
BsmI	GAATGC	2 cut(s)	229, 272
BsnI	GGCC	6 cut(s)	5, 365, 399, 459, 942, 1153
Bso31I	GGTCTC	1 cut(s)	602
Bsp1286I	GDGCHC	2 cut(s)	436, 841
Bsp143I	GATC	3 cut(s)	211, 383, 1225
Bsp19I	CCATGG	2 cut(s)	543, 1143
BspACI	CCGC	8 cut(s)	6, 9, 56, 111, 135, 151, 612, 1150
BspANI	GGCC	6 cut(s)	5, 365, 399, 459, 942, 1153
BspFNI	CGCG	3 cut(s)	11, 83, 123
BspLI	GGNNCC	6 cut(s)	238, 385, 433, 739, 840, 871
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	3 cut(s)	206, 378, 391
BspT107I	GGYRCC	3 cut(s)	431, 737, 869
BspTNI	GGTCTC	1 cut(s)	602
BsrBI	CCGCTC	1 cut(s)	1150
BsrFI	RCCGGY	1 cut(s)	137
BsrI	ACTGG	2 cut(s)	276, 1201
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	5 cut(s)	366, 453, 543, 1143, 1155
BssMI	GATC	3 cut(s)	211, 383, 1225
BssSI	CACGAG	1 cut(s)	903
BssT1I	CCWWGG	5 cut(s)	366, 453, 543, 1143, 1155
Bst2BI	CACGAG	1 cut(s)	903
Bst2UI	CCWGG	3 cut(s)	327, 347, 419
Bst4CI	ACNGT	2 cut(s)	694, 800
Bst6I	CTCTTC	1 cut(s)	666
BstAPI	GCANNNNNTGC	2 cut(s)	737, 944
BstC8I	GCNNGC	5 cut(s)	229, 805, 940, 955, 1035
BstDEI	CTNAG	1 cut(s)	1169
BstDSI	CCRYGG	2 cut(s)	543, 1143
BstENI	CCTNNNNNAGG	1 cut(s)	152
BstF5I	GGATG	4 cut(s)	214, 342, 718, 815
BstFNI	CGCG	3 cut(s)	11, 83, 123
BstH2I	RGCGCY	2 cut(s)	72, 1143
BstHHI	GCGC	4 cut(s)	71, 85, 125, 1142
BstKTI	GATC	3 cut(s)	214, 386, 1228
BstMAI	GTCTC	2 cut(s)	602, 922
BstMBI	GATC	3 cut(s)	211, 383, 1225
BstMWI	GCNNNNNNNGC	7 cut(s)	131, 185, 317, 362, 470, 737, 944
BstNI	CCWGG	3 cut(s)	327, 347, 419
BstSCI	CCNGG	3 cut(s)	325, 345, 417
BstSFI	CTRYAG	2 cut(s)	186, 1083
BstSLI	GKGCMC	1 cut(s)	436
BstUI	CGCG	3 cut(s)	11, 83, 123
BstV1I	GCAGC	7 cut(s)	200, 340, 482, 800, 911, 1084, 1106
BstV2I	GAAGAC	1 cut(s)	36
BstX2I	RGATCY	1 cut(s)	383
BstXI	CCANNNNNNTGG	2 cut(s)	283, 418
BstYI	RGATCY	1 cut(s)	383
BsuI	GTATCC	2 cut(s)	68, 682
BsuRI	GGCC	6 cut(s)	5, 365, 399, 459, 942, 1153
BtgI	CCRYGG	2 cut(s)	543, 1143
BtgZI	GCGATG	1 cut(s)	285
BtrI	CACGTC	1 cut(s)	64
BtsCI	GGATG	4 cut(s)	214, 342, 718, 815
BtsIMutI	CAGTG	1 cut(s)	758
Cac8I	GCNNGC	5 cut(s)	229, 805, 940, 955, 1035
CaiI	CAGNNNCTG	1 cut(s)	944
CfoI	GCGC	4 cut(s)	71, 85, 125, 1142
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	5 cut(s)	397, 457, 941, 1152, 1204
Csp6I	GTAC	4 cut(s)	477, 535, 1002, 1176
CviAII	CATG	6 cut(s)	544, 642, 685, 843, 958, 1144
CviQI	GTAC	4 cut(s)	477, 535, 1002, 1176
DdeI	CTNAG	1 cut(s)	1169
DpnI	GATC	3 cut(s)	213, 385, 1227
DpnII	GATC	3 cut(s)	211, 383, 1225
EaeI	YGGCCR	2 cut(s)	3, 363
Eam1104I	CTCTTC	1 cut(s)	666
EarI	CTCTTC	1 cut(s)	666
EciI	GGCGGA	1 cut(s)	100
Eco130I	CCWWGG	5 cut(s)	366, 453, 543, 1143, 1155
Eco24I	GRGCYC	1 cut(s)	841
Eco31I	GGTCTC	1 cut(s)	602
Eco47I	GGWCC	1 cut(s)	1204
Eco57I	CTGAAG	4 cut(s)	270, 690, 738, 782
EcoNI	CCTNNNNNAGG	1 cut(s)	152
EcoO109I	RGGNCCY	2 cut(s)	457, 941
EcoRI	GAATTC	1 cut(s)	1020
EcoRII	CCWGG	3 cut(s)	325, 345, 417
EcoT14I	CCWWGG	5 cut(s)	366, 453, 543, 1143, 1155
EcoT22I	ATGCAT	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	841
ErhI	CCWWGG	5 cut(s)	366, 453, 543, 1143, 1155
FaeI	CATG	6 cut(s)	547, 645, 688, 846, 961, 1147
FatI	CATG	6 cut(s)	543, 641, 684, 842, 957, 1143
FokI	GGATG	4 cut(s)	221, 329, 725, 802
FriOI	GRGCYC	1 cut(s)	841
FspBI	CTAG	2 cut(s)	131, 585
GlaI	GCGC	4 cut(s)	70, 84, 124, 1141
GsuI	CTGGAG	2 cut(s)	318, 1218
HaeII	RGCGCY	2 cut(s)	72, 1143
HaeIII	GGCC	6 cut(s)	5, 365, 399, 459, 942, 1153
HapII	CCGG	3 cut(s)	138, 873, 1017
HhaI	GCGC	4 cut(s)	71, 85, 125, 1142
Hin1II	CATG	6 cut(s)	547, 645, 688, 846, 961, 1147
Hin6I	GCGC	4 cut(s)	69, 83, 123, 1140
HinP1I	GCGC	4 cut(s)	69, 83, 123, 1140
HinfI	GANTC	3 cut(s)	581, 626, 908
HpaII	CCGG	3 cut(s)	138, 873, 1017
HphI	GGTGA	2 cut(s)	437, 514
Hpy166II	GTNNAC	2 cut(s)	61, 1204
Hpy188I	TCNGA	4 cut(s)	335, 580, 625, 631
Hpy188III	TCNNGA	6 cut(s)	297, 585, 605, 905, 983, 1248
Hpy8I	GTNNAC	2 cut(s)	61, 1204
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	3 cut(s)	422, 713, 757
HpyCH4III	ACNGT	2 cut(s)	694, 800
HpyCH4IV	ACGT	3 cut(s)	44, 63, 970
HpyF10VI	GCNNNNNNNGC	7 cut(s)	131, 185, 317, 362, 470, 737, 944
HpyF3I	CTNAG	1 cut(s)	1169
HpySE526I	ACGT	3 cut(s)	44, 63, 970
Hsp92II	CATG	6 cut(s)	547, 645, 688, 846, 961, 1147
HspAI	GCGC	4 cut(s)	69, 83, 123, 1140
Kzo9I	GATC	3 cut(s)	211, 383, 1225
LmnI	GCTCC	9 cut(s)	242, 308, 317, 370, 665, 844, 1048, 1137, 1147
Lsp1109I	GCAGC	7 cut(s)	200, 340, 482, 800, 911, 1084, 1106
LweI	GCATC	9 cut(s)	158, 166, 262, 544, 690, 703, 740, 824, 1030
MaeI	CTAG	2 cut(s)	131, 585
MaeII	ACGT	3 cut(s)	44, 63, 970
MaeIII	GTNAC	2 cut(s)	181, 502
MalI	GATC	3 cut(s)	213, 385, 1227
MbiI	CCGCTC	1 cut(s)	1150
MboI	GATC	3 cut(s)	211, 383, 1225
MboII	GAAGA	5 cut(s)	40, 41, 263, 406, 683
MflI	RGATCY	1 cut(s)	383
MhlI	GDGCHC	2 cut(s)	436, 841
MlsI	TGGCCA	1 cut(s)	365
MluNI	TGGCCA	1 cut(s)	365
MlyI	GAGTC	1 cut(s)	917
MmeI	TCCRAC	1 cut(s)	295
Mox20I	TGGCCA	1 cut(s)	365
Mph1103I	ATGCAT	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	365
Msp20I	TGGCCA	1 cut(s)	365
MspA1I	CMGCKG	2 cut(s)	614, 1097
MspI	CCGG	3 cut(s)	138, 873, 1017
MspR9I	CCNGG	3 cut(s)	327, 347, 419
Mva1269I	GAATGC	2 cut(s)	229, 272
MvaI	CCWGG	3 cut(s)	327, 347, 419
MvnI	CGCG	3 cut(s)	11, 83, 123
MwoI	GCNNNNNNNGC	7 cut(s)	131, 185, 317, 362, 470, 737, 944
NcoI	CCATGG	2 cut(s)	543, 1143
NdeII	GATC	3 cut(s)	211, 383, 1225
NlaIII	CATG	6 cut(s)	547, 645, 688, 846, 961, 1147
NlaIV	GGNNCC	6 cut(s)	238, 385, 433, 739, 840, 871
NmuCI	GTSAC	1 cut(s)	502
NsiI	ATGCAT	1 cut(s)	173
PctI	GAATGC	2 cut(s)	229, 272
PfeI	GAWTC	2 cut(s)	581, 626
PleI	GAGTC	1 cut(s)	916
PpsI	GAGTC	1 cut(s)	916
Psp6I	CCWGG	3 cut(s)	325, 345, 417
PspGI	CCWGG	3 cut(s)	325, 345, 417
PspN4I	GGNNCC	6 cut(s)	238, 385, 433, 739, 840, 871
PspPI	GGNCC	5 cut(s)	397, 457, 941, 1152, 1204
PstI	CTGCAG	1 cut(s)	190
PstNI	CAGNNNCTG	1 cut(s)	944
PsuI	RGATCY	1 cut(s)	383
PvuII	CAGCTG	1 cut(s)	1097
RsaI	GTAC	4 cut(s)	478, 536, 1003, 1177
RsaNI	GTAC	4 cut(s)	477, 535, 1002, 1176
Sau3AI	GATC	3 cut(s)	211, 383, 1225
Sau96I	GGNCC	5 cut(s)	397, 457, 941, 1152, 1204
SchI	GAGTC	1 cut(s)	917
ScrFI	CCNGG	3 cut(s)	327, 347, 419
SduI	GDGCHC	2 cut(s)	436, 841
SfaNI	GCATC	9 cut(s)	158, 166, 262, 544, 690, 703, 740, 824, 1030
SfcI	CTRYAG	2 cut(s)	186, 1083
SinI	GGWCC	1 cut(s)	1204
SmlI	CTYRAG	3 cut(s)	104, 603, 742
SmoI	CTYRAG	3 cut(s)	104, 603, 742
SsiI	CCGC	8 cut(s)	6, 9, 56, 111, 135, 151, 612, 1150
SspMI	CTAG	2 cut(s)	131, 585
StyD4I	CCNGG	3 cut(s)	325, 345, 417
StyI	CCWWGG	5 cut(s)	366, 453, 543, 1143, 1155
TaaI	ACNGT	2 cut(s)	694, 800
TaiI	ACGT	3 cut(s)	47, 66, 973
TatI	WGTACW	3 cut(s)	534, 1001, 1175
TauI	GCSGC	4 cut(s)	8, 11, 137, 1153
TfiI	GAWTC	2 cut(s)	581, 626
TscAI	CASTG	1 cut(s)	765
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	7 cut(s)	188, 353, 470, 788, 899, 1094, 1097
Tsp45I	GTSAC	1 cut(s)	502
TspDTI	ATGAA	2 cut(s)	902, 974
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	1 cut(s)	765
VpaK11BI	GGWCC	1 cut(s)	1204
XagI	CCTNNNNNAGG	1 cut(s)	152
XapI	RAATTY	3 cut(s)	292, 574, 1020
XbaI	TCTAGA	1 cut(s)	584
XcmI	CCANNNNNNNNNTGG	1 cut(s)	49
XspI	CTAG	2 cut(s)	131, 585
Zsp2I	ATGCAT	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.