Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004496

Physical Location & Seq

Genomic Coordinates Forward (+)

48889291 .. 48890914

Gene Structure 1624 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029775

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGTAGACGATGAAAAAGCAAAGACAGAAACTTATGTTGTTGGATTTCCTTATAGTCCTCAAGAGGCTGCTGGAATTTCAGAATTAGAAGCTCAACCATGTGATCCTTTGAAGAATAATGGGGCAGAGGAGGATTGCATCATGGACACTGTTGGAGTTATTTGTGTTGATGCTGACGAACAAATTGCATCTGGTGCCTCAAGTGGGGGCATTGCATTGAAGGCAGGTCCTGCCTGTGCTTGTATGAAAGTTTTACGCTCCTTTGTTCAAGAGAGTAATCAAAATTGTACTGATAGAAGTGCCGGATTTCTAGCTGTGCAAGCTGATACTCCTGTGATGGTTTCAGGAAGTTCTCCAAAGTTAAAAGCTATTGAGATTGTAGCTGCTTACTCTTCCTTATCCTTTGGGATAGGATTTTTCGGAAGCTCTATGGAGCGACCCAAGGTATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Asparaginase_2

Protein Analysis

151

Amino Acids

15.69

Weight (kDa)

4.37

Isoelectric Point (pI)

46.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G00590 AT4G00590
fragaria_vesca	FvH4_7g13631 FvH4_7g13631
malus_domestica	MD01G1053500.v1.1 MD01G1053600.v1.1 MD07G1141600.v1.1
prunus_persica	Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.2G162500_v2.0.a1 Prupe.8G034000_v2.0.a1
pyrus_communis	pycom01g07920 pycom07g14050
rosa_chinensis	RchiOBHm_Chr1g0353681 RchiOBHm_Chr1g0353691
rosa_laevigata	RLG00000028242 RLG00000028265 RLG00000029492 RLG00000029775
rosa_multiflora	Rmu_sc0001849.1_g000001
rosa_roxburghii	Rroxscaffold_4G00301740
rosa_rugosa	Rorug01G0237100
rosa_samantha	Rh1AG249300 Rh1BG219400 Rh1CG099800 Rh1CG232000 Rh1DG107100 Rh1DG246400
rosa_wichuraiana	Rw1G021730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	215
AccB1I	GGYRCC	1 cut(s)	194
AccI	GTMKAC	1 cut(s)	6
AclWI	GGATC	1 cut(s)	98
AcsI	RAATTY	1 cut(s)	75
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	204
AgsI	TTSAA	3 cut(s)	112, 220, 269
AluBI	AGCT	6 cut(s)	92, 314, 323, 368, 383, 426
AluI	AGCT	6 cut(s)	92, 314, 323, 368, 383, 426
AlwI	GGATC	1 cut(s)	98
AlwNI	CAGNNNCTG	1 cut(s)	230
ApeKI	GCWGC	2 cut(s)	68, 383
ApoI	RAATTY	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	227
BaeI	ACNNNNGTAYC	2 cut(s)	318, 351
BanI	GGYRCC	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	55, 370
BccI	CCATC	1 cut(s)	331
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BfaI	CTAG	1 cut(s)	311
BfuAI	ACCTGC	1 cut(s)	215
BisI	GCNGC	2 cut(s)	69, 384
BlsI	GCNGC	2 cut(s)	70, 385
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	196
BmsI	GCATC	3 cut(s)	147, 160, 197
BpuEI	CTTGAG	2 cut(s)	45, 184
BsaJI	CCNNGG	1 cut(s)	441
Bsc4I	CCNNNNNNNGG	1 cut(s)	204
Bse3DI	GCAATG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	441
BseLI	CCNNNNNNNGG	1 cut(s)	204
BseMI	GCAATG	1 cut(s)	210
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	55, 370
BshNI	GGYRCC	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	204
Bsp143I	GATC	1 cut(s)	103
BspLI	GGNNCC	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	215
BspPI	GGATC	1 cut(s)	98
BspT107I	GGYRCC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	210
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	441
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	397
BstAPI	GCANNNNNTGC	2 cut(s)	194, 230
BstC8I	GCNNGC	1 cut(s)	321
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstMWI	GCNNNNNNNGC	4 cut(s)	194, 221, 230, 320
BstV1I	GCAGC	2 cut(s)	55, 370
BtsIMutI	CAGTG	1 cut(s)	147
BveI	ACCTGC	1 cut(s)	215
Cac8I	GCNNGC	1 cut(s)	321
CaiI	CAGNNNCTG	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	227
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	2 cut(s)	99, 142
CviJI	RGCY	7 cut(s)	68, 92, 314, 323, 368, 383, 426
CviKI_1	RGCY	7 cut(s)	68, 92, 314, 323, 368, 383, 426
CviQI	GTAC	1 cut(s)	288
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	397
EarI	CTCTTC	1 cut(s)	397
Eco130I	CCWWGG	1 cut(s)	441
Eco47I	GGWCC	1 cut(s)	227
EcoO109I	RGGNCCY	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	441
FaeI	CATG	2 cut(s)	102, 145
FaiI	YATR	7 cut(s)	36, 54, 100, 143, 245, 431, 448
FatI	CATG	2 cut(s)	98, 141
FblI	GTMKAC	1 cut(s)	6
Fnu4HI	GCNGC	2 cut(s)	69, 384
Fsp4HI	GCNGC	2 cut(s)	69, 384
FspBI	CTAG	1 cut(s)	311
GluI	GCNGC	2 cut(s)	69, 384
HapII	CCGG	1 cut(s)	303
Hin1II	CATG	2 cut(s)	102, 145
HpaII	CCGG	1 cut(s)	303
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	82, 422
Hpy188III	TCNNGA	3 cut(s)	62, 269, 345
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	1 cut(s)	214
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4V	TGCA	4 cut(s)	138, 188, 215, 319
HpyF10VI	GCNNNNNNNGC	4 cut(s)	194, 221, 230, 320
Hsp92II	CATG	2 cut(s)	102, 145
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	2 cut(s)	263, 433
LpnPI	CCDG	8 cut(s)	57, 177, 210, 243, 247, 316, 330, 345
Lsp1109I	GCAGC	2 cut(s)	55, 370
LweI	GCATC	3 cut(s)	147, 160, 197
MaeI	CTAG	1 cut(s)	311
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	2 cut(s)	124, 384
MluCI	AATT	4 cut(s)	75, 83, 183, 283
MmeI	TCCRAC	2 cut(s)	22, 133
MnlI	CCTC	5 cut(s)	58, 69, 121, 124, 208
MseI	TTAA	1 cut(s)	362
MspI	CCGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	4 cut(s)	194, 221, 230, 320
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	2 cut(s)	102, 145
NlaIV	GGNNCC	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	70, 385
PpuMI	RGGWCCY	1 cut(s)	227
Psp5II	RGGWCCY	1 cut(s)	227
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	227
PspPPI	RGGWCCY	1 cut(s)	227
PstNI	CAGNNNCTG	1 cut(s)	230
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
SaqAI	TTAA	1 cut(s)	362
SatI	GCNGC	2 cut(s)	69, 384
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	1 cut(s)	227
SetI	ASST	8 cut(s)	94, 229, 316, 325, 370, 385, 428, 447
SfaNI	GCATC	3 cut(s)	147, 160, 197
SinI	GGWCC	1 cut(s)	227
SmlI	CTYRAG	2 cut(s)	60, 199
SmoI	CTYRAG	2 cut(s)	60, 199
Sse9I	AATT	4 cut(s)	75, 83, 183, 283
SspMI	CTAG	1 cut(s)	311
StyI	CCWWGG	1 cut(s)	441
TaaI	ACNGT	1 cut(s)	151
TasI	AATT	4 cut(s)	75, 83, 183, 283
TatI	WGTACW	1 cut(s)	287
Tru1I	TTAA	1 cut(s)	362
Tru9I	TTAA	1 cut(s)	362
TscAI	CASTG	1 cut(s)	154
TseI	GCWGC	2 cut(s)	68, 383
TspDTI	ATGAA	2 cut(s)	27, 260
TspRI	CASTG	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	75
XmiI	GTMKAC	1 cut(s)	6
XspI	CTAG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.