RLG00000029492

Ceramide

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
39460647 .. 39466544
5898 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029492

Sequence Viewer

Length: 1539 bp
ATGGTAGACGATGAAAAAGCAAAGACAGAAACTTCTGTTGTTGGATTTCCTTGTAGTCCTCAAGAGGCTGCTGGAATTTCAAAATTAGAAGCTCAACCATGTGATCCTTTGAAGAATAATGGGGCAGAGGAGGATTGCATCATGGACACTGTTGGAGTTATTTGTGTCGATGCTGACGGACAAATTGCATCTGGTGCCTCAAGTGGGGGCATTGCATTAAAGGTTGGTGGGCGTGTAGGGTTAGCAGCAATGCATGGTTCAAGATGCTGGGCATCCTCCAAAGTCTTTTTGGGGCTCCATGCAGGTCCTGCCTGTGCTTGTATGAAAGTTTTACGCTCCTTTGTTCAAGAGAGTAATCAAAATTGTACTGATAAAAGTGCCGGATTTCTAGATGTGCAAGCTGATGCTCTTGTGATGGTTTCAGGAAGTTCTCCAAAGTTAAAAGCTATTGAGATTGAAGCTGCTTACTCTTCCTTATCCCTTGGGATAGGATTTTTCGGAAGCTCTATGGAGCGAACCAAGTTTTTGGCCTTCAGAAAATGGTTCTTTCGCTACTTGAGGTTTGAAAGTAATGCTCTTTTTGTAGTGGTTCTGGTTGACTCAACTTGTTTGTGCATCAAATTTGCTTCAAAGGTTGCACCAACCGAGATCGAGTTTTCGGATGTGTATGCTGTTGAGCTGATCAACTATGGTGTGATTCATGGACCAAATGTCTCAAATGCTCGAAGATGCCTTAAGGCCTTAAGGATTTACCGCTTTACGGTGCATAGTTTCCAGAGCTCAAGGACTTTGCCGTCTGTTCGGGTCCTTGCTACATATACCTTTGGTCATAAGGATCTCCACACATGTCAGATATGGGTCAATCAAATCAATGCTTCTCTGGACTTAGAGCAGGGGACGCCAAAGAATCTTTTGGTTTTTGTTCATCCAAGGAGTGGGAAGGGAAATGCCTGCAAAACTTGGGACAGTGTGGCTCGTATTTTCTCCCGTGCTAAAGTGAAAACAAAGGTGATTGTGATCGAAAGGGGAGGGCATGCATATGATGCGATGGCAACTATAGGAAACAAGTATAAAGCTCCATATCCACCAACTCCTTCAGATTTCCTTGATTCTGCTTGTTGTAATGAGAATCTCATTGTAAATGATCCAAGTGAAACCGATATTGAAGCTTCTTCTCGGAATAATGAGCAGTCTCCCCTCCTCTCAAGTTCAATGGATCAAGAGCTTGAGATTTCCCTCCCCAATGAACATTCAAGATTTGGACTCATTCCTGCTGGCTCAACTGATGCCATTGTGATGTGTTCAACTGGGGCTCGAGATCCTATAACATCTGCATTTCACATTGTCCTTGGTAAAAGAGTGTGGCTTGATGTAGCCCAAGTTGTGAGGTGGAAAACGGAATCTACATCGGAGGTTGACCCTTACGTGCACTCTCTACAAGTGGCATTTGGTCCTGAAGCTCCTTCCTCGGGCTCCATGAGGACATATGGGGTACTGCGTACTGAAGGTAGAAAAATCTTGATCAAGGGAGCAGCTTAG

Protein Analysis

513

Amino Acids

55.45

Weight (kDa)

7.49

Isoelectric Point (pI)

44.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Asparaginase_2 PF01112 38 - 94 3.9e-11 Asparaginase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 793
Acc36I ACCTGC 1 cut(s) 293
AccB1I GGYRCC 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 935
AccI GTMKAC 1 cut(s) 6
AciI CCGC 1 cut(s) 754
AclWI GGATC 5 cut(s) 98, 843, 1139, 1224, 1313
AcsI RAATTY 2 cut(s) 75, 620
AcuI CTGAAG 4 cut(s) 517, 1080, 1476, 1524
AcyI GRCGYC 1 cut(s) 899
AfaI GTAC 3 cut(s) 367, 1494, 1501
AfiI CCNNNNNNNGG 4 cut(s) 204, 760, 935, 1469
AflII CTTAAG 2 cut(s) 734, 742
AflIII ACRYGT 1 cut(s) 845
AhdI GACNNNNNGTC 1 cut(s) 710
Alw21I GWGCWC 2 cut(s) 782, 1431
Alw26I GTCTC 2 cut(s) 718, 1197
Alw44I GTGCAC 1 cut(s) 1427
AlwI GGATC 5 cut(s) 98, 843, 1139, 1224, 1313
AlwNI CAGNNNCTG 1 cut(s) 308
Ama87I CYCGRG 2 cut(s) 1314, 1468
AoxI GGCC 2 cut(s) 528, 738
ApaLI GTGCAC 1 cut(s) 1427
ApeKI GCWGC 4 cut(s) 68, 245, 461, 1532
ApoI RAATTY 2 cut(s) 75, 620
AspS9I GGNCC 4 cut(s) 305, 704, 805, 1451
AsuHPI GGTGA 1 cut(s) 1021
AvaI CYCGRG 2 cut(s) 1314, 1468
AvaII GGWCC 4 cut(s) 305, 704, 805, 1451
BaeGI GKGCMC 1 cut(s) 1431
BanI GGYRCC 1 cut(s) 194
BanII GRGCYC 4 cut(s) 297, 782, 1315, 1475
Bbv12I GWGCWC 2 cut(s) 782, 1431
BbvI GCAGC 3 cut(s) 55, 257, 448
BccI CCATC 2 cut(s) 409, 1042
BceAI ACGGC 1 cut(s) 778
BclI TGATCA 2 cut(s) 681, 1521
BcoDI GTCTC 2 cut(s) 718, 1197
BfaI CTAG 1 cut(s) 389
BfmI CTRYAG 1 cut(s) 1056
BfrI CTTAAG 2 cut(s) 734, 742
BfuAI ACCTGC 1 cut(s) 293
BisI GCNGC 4 cut(s) 69, 246, 462, 1533
BlsI GCNGC 4 cut(s) 70, 247, 463, 1534
Bme18I GGWCC 4 cut(s) 305, 704, 805, 1451
BmeRI GACNNNNNGTC 1 cut(s) 710
BmeT110I CYCGRG 2 cut(s) 1314, 1468
BmgT120I GGNCC 4 cut(s) 305, 704, 805, 1451
BmiI GGNNCC 4 cut(s) 196, 296, 806, 1474
BmrI ACTGGG 1 cut(s) 1317
BmuI ACTGGG 1 cut(s) 1317
BpuEI CTTGAG 6 cut(s) 45, 184, 577, 766, 1189, 1247
BsaAI YACGTR 1 cut(s) 1426
BsaBI GATNNNNATC 1 cut(s) 1016
BsaHI GRCGYC 1 cut(s) 899
BsaJI CCNNGG 4 cut(s) 481, 929, 1348, 1467
Bsc4I CCNNNNNNNGG 4 cut(s) 204, 760, 935, 1469
Bse1I ACTGG 1 cut(s) 1312
Bse3DI GCAATG 2 cut(s) 210, 255
Bse8I GATNNNNATC 1 cut(s) 1016
BseDI CCNNGG 4 cut(s) 481, 929, 1348, 1467
BseGI GGATG 3 cut(s) 272, 667, 925
BseJI GATNNNNATC 1 cut(s) 1016
BseLI CCNNNNNNNGG 4 cut(s) 204, 760, 935, 1469
BseMI GCAATG 2 cut(s) 210, 255
BseNI ACTGG 1 cut(s) 1312
BseRI GAGGAG 2 cut(s) 143, 1190
BseSI GKGCMC 1 cut(s) 1431
BseXI GCAGC 3 cut(s) 55, 257, 448
BseYI CCCAGC 1 cut(s) 267
BshFI GGCC 2 cut(s) 530, 740
BshNI GGYRCC 1 cut(s) 194
BsiHKAI GWGCWC 2 cut(s) 782, 1431
BsiHKCI CYCGRG 2 cut(s) 1314, 1468
BsiSI CCGG 1 cut(s) 381
BslFI GGGAC 2 cut(s) 910, 977
BslI CCNNNNNNNGG 4 cut(s) 204, 760, 935, 1469
BsmAI GTCTC 2 cut(s) 718, 1197
BsmFI GGGAC 2 cut(s) 910, 977
BsnI GGCC 2 cut(s) 530, 740
BsoBI CYCGRG 2 cut(s) 1314, 1468
Bsp1286I GDGCHC 5 cut(s) 297, 782, 1315, 1431, 1475
Bsp143I GATC 9 cut(s) 103, 648, 681, 835, 1017, 1144, 1216, 1318, 1521
BspACI CCGC 1 cut(s) 754
BspANI GGCC 2 cut(s) 530, 740
BspLI GGNNCC 4 cut(s) 196, 296, 806, 1474
BspMI ACCTGC 1 cut(s) 293
BspPI GGATC 5 cut(s) 98, 843, 1139, 1224, 1313
BspT107I GGYRCC 1 cut(s) 194
BspTI CTTAAG 2 cut(s) 734, 742
BsrDI GCAATG 2 cut(s) 210, 255
BsrI ACTGG 1 cut(s) 1312
BssECI CCNNGG 4 cut(s) 481, 929, 1348, 1467
BssMI GATC 9 cut(s) 103, 648, 681, 835, 1017, 1144, 1216, 1318, 1521
BssNI GRCGYC 1 cut(s) 899
BssT1I CCWWGG 3 cut(s) 481, 929, 1348
Bst4CI ACNGT 3 cut(s) 151, 763, 968
Bst6I CTCTTC 1 cut(s) 475
BstACI GRCGYC 1 cut(s) 899
BstAFI CTTAAG 2 cut(s) 734, 742
BstAPI GCANNNNNTGC 3 cut(s) 194, 308, 1043
BstBAI YACGTR 1 cut(s) 1426
BstC8I GCNNGC 4 cut(s) 399, 952, 1035, 1276
BstDEI CTNAG 2 cut(s) 886, 1536
BstF5I GGATG 3 cut(s) 272, 667, 925
BstKTI GATC 9 cut(s) 106, 651, 684, 838, 1020, 1147, 1219, 1321, 1524
BstMAI GTCTC 2 cut(s) 718, 1197
BstMBI GATC 9 cut(s) 103, 648, 681, 835, 1017, 1144, 1216, 1318, 1521
BstMWI GCNNNNNNNGC 4 cut(s) 194, 308, 898, 1043
BstNSI RCATGY 2 cut(s) 849, 1037
BstSFI CTRYAG 1 cut(s) 1056
BstSLI GKGCMC 1 cut(s) 1431
BstV1I GCAGC 3 cut(s) 55, 257, 448
BstX2I RGATCY 2 cut(s) 835, 1318
BstXI CCANNNNNNTGG 1 cut(s) 526
BstYI RGATCY 2 cut(s) 835, 1318
BsuRI GGCC 2 cut(s) 530, 740
BtgZI GCGATG 1 cut(s) 1061
BtsCI GGATG 3 cut(s) 272, 667, 925
BtsIMutI CAGTG 2 cut(s) 147, 973
BveI ACCTGC 1 cut(s) 293
Cac8I GCNNGC 4 cut(s) 399, 952, 1035, 1276
CaiI CAGNNNCTG 1 cut(s) 308
Cfr13I GGNCC 4 cut(s) 305, 704, 805, 1451
CseI GACGC 1 cut(s) 907
Csp6I GTAC 3 cut(s) 366, 1493, 1500
CviAII CATG 8 cut(s) 99, 142, 254, 299, 701, 846, 1034, 1477
CviQI GTAC 3 cut(s) 366, 1493, 1500
DdeI CTNAG 2 cut(s) 886, 1536
DpnI GATC 9 cut(s) 105, 650, 683, 837, 1019, 1146, 1218, 1320, 1523
DpnII GATC 9 cut(s) 103, 648, 681, 835, 1017, 1144, 1216, 1318, 1521
DrdI GACNNNNNNGTC 1 cut(s) 793
DriI GACNNNNNGTC 1 cut(s) 710
DseDI GACNNNNNNGTC 1 cut(s) 793
Eam1104I CTCTTC 1 cut(s) 475
Eam1105I GACNNNNNGTC 1 cut(s) 710
EarI CTCTTC 1 cut(s) 475
Ecl136II GAGCTC 1 cut(s) 780
Eco130I CCWWGG 3 cut(s) 481, 929, 1348
Eco147I AGGCCT 1 cut(s) 740
Eco24I GRGCYC 4 cut(s) 297, 782, 1315, 1475
Eco47I GGWCC 4 cut(s) 305, 704, 805, 1451
Eco53kI GAGCTC 1 cut(s) 780
Eco57I CTGAAG 4 cut(s) 517, 1080, 1476, 1524
Eco88I CYCGRG 2 cut(s) 1314, 1468
EcoICRI GAGCTC 1 cut(s) 780
EcoO109I RGGNCCY 2 cut(s) 305, 805
EcoT14I CCWWGG 3 cut(s) 481, 929, 1348
EcoT22I ATGCAT 2 cut(s) 255, 1039
EcoT38I GRGCYC 4 cut(s) 297, 782, 1315, 1475
ErhI CCWWGG 3 cut(s) 481, 929, 1348
FaeI CATG 8 cut(s) 102, 145, 257, 302, 704, 849, 1037, 1480
FaqI GGGAC 2 cut(s) 910, 977
FatI CATG 8 cut(s) 98, 141, 253, 298, 700, 845, 1033, 1476
FauNDI CATATG 2 cut(s) 1039, 1486
FbaI TGATCA 2 cut(s) 681, 1521
FblI GTMKAC 1 cut(s) 6
Fnu4HI GCNGC 4 cut(s) 69, 246, 462, 1533
FokI GGATG 3 cut(s) 259, 674, 912
FriOI GRGCYC 4 cut(s) 297, 782, 1315, 1475
Fsp4HI GCNGC 4 cut(s) 69, 246, 462, 1533
FspBI CTAG 1 cut(s) 389
GluI GCNGC 4 cut(s) 69, 246, 462, 1533
GsaI CCCAGC 1 cut(s) 271
HaeIII GGCC 2 cut(s) 530, 740
HapII CCGG 1 cut(s) 381
HgaI GACGC 1 cut(s) 907
Hin1I GRCGYC 1 cut(s) 899
Hin1II CATG 8 cut(s) 102, 145, 257, 302, 704, 849, 1037, 1480
HincII GTYRAC 2 cut(s) 598, 1417
HindII GTYRAC 2 cut(s) 598, 1417
HindIII AAGCTT 1 cut(s) 1167
HinfI GANTC 7 cut(s) 599, 697, 907, 1109, 1129, 1263, 1400
HpaII CCGG 1 cut(s) 381
HphI GGTGA 1 cut(s) 1021
Hpy166II GTNNAC 4 cut(s) 7, 598, 1417, 1429
Hpy188I TCNGA 7 cut(s) 500, 536, 661, 852, 1099, 1179, 1411
Hpy8I GTNNAC 4 cut(s) 7, 598, 1417, 1429
HpyAV CCTTC 5 cut(s) 541, 934, 1104, 1473, 1499
HpyCH4III ACNGT 3 cut(s) 151, 763, 968
HpyCH4IV ACGT 1 cut(s) 1425
HpyF10VI GCNNNNNNNGC 4 cut(s) 194, 308, 898, 1043
HpyF3I CTNAG 2 cut(s) 886, 1536
HpySE526I ACGT 1 cut(s) 1425
Hsp92I GRCGYC 1 cut(s) 899
Hsp92II CATG 8 cut(s) 102, 145, 257, 302, 704, 849, 1037, 1480
Ksp22I TGATCA 2 cut(s) 681, 1521
Kzo9I GATC 9 cut(s) 103, 648, 681, 835, 1017, 1144, 1216, 1318, 1521
LmnI GCTCC 7 cut(s) 300, 341, 511, 1081, 1465, 1478, 1529
Lsp1109I GCAGC 3 cut(s) 55, 257, 448
MaeI CTAG 1 cut(s) 389
MaeII ACGT 1 cut(s) 1425
MalI GATC 9 cut(s) 105, 650, 683, 837, 1019, 1146, 1218, 1320, 1523
MboI GATC 9 cut(s) 103, 648, 681, 835, 1017, 1144, 1216, 1318, 1521
MboII GAAGA 4 cut(s) 124, 462, 738, 1164
MflI RGATCY 2 cut(s) 835, 1318
MhlI GDGCHC 5 cut(s) 297, 782, 1315, 1431, 1475
MluCI AATT 5 cut(s) 75, 83, 183, 361, 620
MlyI GAGTC 2 cut(s) 593, 1257
MmeI TCCRAC 2 cut(s) 22, 133
Mph1103I ATGCAT 2 cut(s) 255, 1039
MseI TTAA 4 cut(s) 218, 440, 735, 743
MslI CAYNNNNRTG 2 cut(s) 1038, 1295
MspCI CTTAAG 2 cut(s) 734, 742
MspI CCGG 1 cut(s) 381
MwoI GCNNNNNNNGC 4 cut(s) 194, 308, 898, 1043
NdeI CATATG 2 cut(s) 1039, 1486
NdeII GATC 9 cut(s) 103, 648, 681, 835, 1017, 1144, 1216, 1318, 1521
NlaIII CATG 8 cut(s) 102, 145, 257, 302, 704, 849, 1037, 1480
NlaIV GGNNCC 4 cut(s) 196, 296, 806, 1474
NsiI ATGCAT 2 cut(s) 255, 1039
NspI RCATGY 2 cut(s) 849, 1037
PaeI GCATGC 1 cut(s) 1037
PaeR7I CTCGAG 1 cut(s) 1314
PceI AGGCCT 1 cut(s) 740
PciI ACATGT 1 cut(s) 845
PfeI GAWTC 5 cut(s) 697, 907, 1109, 1129, 1400
PflMI CCANNNNNTGG 1 cut(s) 935
PkrI GCNGC 4 cut(s) 70, 247, 463, 1534
PleI GAGTC 2 cut(s) 593, 1257
PpsI GAGTC 2 cut(s) 593, 1257
Ppu21I YACGTR 1 cut(s) 1426
PpuMI RGGWCCY 2 cut(s) 305, 805
PscI ACATGT 1 cut(s) 845
Psp124BI GAGCTC 1 cut(s) 782
Psp5II RGGWCCY 2 cut(s) 305, 805
PspFI CCCAGC 1 cut(s) 267
PspN4I GGNNCC 4 cut(s) 196, 296, 806, 1474
PspPI GGNCC 4 cut(s) 305, 704, 805, 1451
PspPPI RGGWCCY 2 cut(s) 305, 805
PstNI CAGNNNCTG 1 cut(s) 308
PsuI RGATCY 2 cut(s) 835, 1318
RsaI GTAC 3 cut(s) 367, 1494, 1501
RsaNI GTAC 3 cut(s) 366, 1493, 1500
RseI CAYNNNNRTG 2 cut(s) 1038, 1295
SacI GAGCTC 1 cut(s) 782
SaqAI TTAA 4 cut(s) 218, 440, 735, 743
SatI GCNGC 4 cut(s) 69, 246, 462, 1533
Sau3AI GATC 9 cut(s) 103, 648, 681, 835, 1017, 1144, 1216, 1318, 1521
Sau96I GGNCC 4 cut(s) 305, 704, 805, 1451
SchI GAGTC 2 cut(s) 593, 1257
SduI GDGCHC 5 cut(s) 297, 782, 1315, 1431, 1475
SfcI CTRYAG 1 cut(s) 1056
Sfr274I CTCGAG 1 cut(s) 1314
SinI GGWCC 4 cut(s) 305, 704, 805, 1451
SlaI CTCGAG 1 cut(s) 1314
SmiMI CAYNNNNRTG 2 cut(s) 1038, 1295
SmlI CTYRAG 9 cut(s) 60, 199, 556, 734, 742, 781, 1204, 1226, 1314
SmoI CTYRAG 9 cut(s) 60, 199, 556, 734, 742, 781, 1204, 1226, 1314
SphI GCATGC 1 cut(s) 1037
Sse9I AATT 5 cut(s) 75, 83, 183, 361, 620
SseBI AGGCCT 1 cut(s) 740
SsiI CCGC 1 cut(s) 754
SspMI CTAG 1 cut(s) 389
SstI GAGCTC 1 cut(s) 782
StuI AGGCCT 1 cut(s) 740
StyI CCWWGG 3 cut(s) 481, 929, 1348
TaaI ACNGT 3 cut(s) 151, 763, 968
TaiI ACGT 1 cut(s) 1428
TaqI TCGA 5 cut(s) 168, 651, 724, 1020, 1315
TasI AATT 5 cut(s) 75, 83, 183, 361, 620
TatI WGTACW 1 cut(s) 365
TfiI GAWTC 5 cut(s) 697, 907, 1109, 1129, 1400
Tru1I TTAA 4 cut(s) 218, 440, 735, 743
Tru9I TTAA 4 cut(s) 218, 440, 735, 743
TscAI CASTG 2 cut(s) 154, 973
TseI GCWGC 4 cut(s) 68, 245, 461, 1532
TspDTI ATGAA 5 cut(s) 27, 338, 689, 914, 1260
TspGWI ACGGA 2 cut(s) 192, 1412
TspRI CASTG 2 cut(s) 154, 973
Van91I CCANNNNNTGG 1 cut(s) 935
Vha464I CTTAAG 2 cut(s) 734, 742
VneI GTGCAC 1 cut(s) 1427
VpaK11BI GGWCC 4 cut(s) 305, 704, 805, 1451
XapI RAATTY 2 cut(s) 75, 620
XbaI TCTAGA 1 cut(s) 388
XceI RCATGY 2 cut(s) 849, 1037
XcmI CCANNNNNNNNNTGG 1 cut(s) 286
XhoI CTCGAG 1 cut(s) 1314
XmiI GTMKAC 1 cut(s) 6
XspI CTAG 1 cut(s) 389
Zsp2I ATGCAT 2 cut(s) 255, 1039
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.