Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0010601

Physical Location & Seq

Genomic Coordinates Forward (+)

28833926 .. 28835989

Gene Structure 2064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1189400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCTGTTTCTTCTTCTTCTTCAGTATCTGACGTCCGTCGTTGGAAATATGATGTCTTCGTCAGTTTCGGACACCAAGACACCGGCAGGGATTTTGTCAGCCATCTGATCAGAGCTTTCAATCAGAAATCAATCAGTACACCCGTGGATGCTGAAGGTATTTGCAGAGACGACTGCCCTTCGGAGGAGCTCCCAGACGCCGTCCAACATTCGAGGCTTTTTATTGTAGTTTTTTCTAAAGGATACGCTGATTCCAGATGTCGCCTCGAAGAACTGGTCCAAATGCTGAACTGCGTGGATAAAAATAACCAGAAGTTGTTGCCCGTTTTCTATAGAGTAGATCCGTCTGATGTTCGTAGAGCCACCGGAGCTTTTGCGGAAGCTTTTCAGAAATACGAGTGCAATCGCGTCGACGAGGAAGAGGTGCCGAGATGGAGATCCGCTCTAACTAGTGCCAGCAATTATTTTGGCTGGTATCTCCCATATTATAGGAATGAAGCCGACGTGATCGAGGAAATCGTACAAAGTGTTTTTGATAAATTGATCTGCTTCTCATCGTATGGCAGTCGTCGGAAATATGATGTATTTCTCAACTTTAGAGGTACAGACACTCGCAAGAGTTTTGTCGTCCATCTCTACAAAGCTCTGTATCTAAAAGTAATCAACACCTTCATGGATGGTGAAGAGTTAGAAAAGGCAACAGCATTTCGGATCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 NB-ARC TIR

Protein Analysis

240

Amino Acids

27.69

Weight (kDa)

6.13

Isoelectric Point (pI)

46.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	16 - 181	1.6e-38	TIR domain
TIR_2	PF13676	19 - 115	2.1e-11	TIR domain
TIR	PF01582	192 - 233	2.3e-09	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010601)

Species	Orthologous Gene IDs
malus_domestica	MD01G1189400.v1.1 MD01G1189500.v1.1 MD01G1190900.v1.1 MD02G1115500.v1.1 MD07G1015200.v1.1
prunus_persica	Prupe.7G017000_v2.0.a1
pyrus_communis	pycom01g20170 pycom01g20180
rosa_chinensis	RchiOBHm_Chr1g0375961 RchiOBHm_Chr6g0246441 RchiOBHm_Chr6g0250821
rosa_laevigata	RLG00000002905 RLG00000026640 RLG00000026645 RLG00000028594
rosa_multiflora	Rmu_sc0001066.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305800
rosa_rugosa	Rorug02G0306400 Rorug05G0497800 Rorug07G0269300
rosa_wichuraiana	Rw6G016530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	36
AccB1I	GGYRCC	1 cut(s)	424
AccBSI	CCGCTC	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	411
AccII	CGCG	1 cut(s)	408
AciI	CCGC	2 cut(s)	377, 441
AclWI	GGATC	3 cut(s)	335, 432, 719
AcuI	CTGAAG	2 cut(s)	6, 174
AcyI	GRCGYC	2 cut(s)	33, 198
AfaI	GTAC	3 cut(s)	139, 522, 604
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	1 cut(s)	121
AhlI	ACTAGT	1 cut(s)	449
AjiI	CACGTC	1 cut(s)	505
AluBI	AGCT	5 cut(s)	116, 190, 371, 383, 644
AluI	AGCT	5 cut(s)	116, 190, 371, 383, 644
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	3 cut(s)	335, 432, 719
AlwNI	CAGNNNCTG	1 cut(s)	29
ArsI	GACNNNNNNTTYG	2 cut(s)	261, 293
Asp700I	GAANNNNTTC	1 cut(s)	384
AspS9I	GGNCC	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	692
AvaII	GGWCC	1 cut(s)	277
BanI	GGYRCC	1 cut(s)	424
BanII	GRGCYC	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	192
BccI	CCATC	4 cut(s)	111, 426, 639, 671
BceAI	ACGGC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	391, 425
BciVI	GTATCC	1 cut(s)	236
BclI	TGATCA	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	162
BcuI	ACTAGT	1 cut(s)	449
BfaI	CTAG	1 cut(s)	450
BfmI	CTRYAG	1 cut(s)	331
BfuI	GTATCC	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	277
BmgBI	CACGTC	1 cut(s)	505
BmgT120I	GGNCC	1 cut(s)	277
BmiI	GGNNCC	1 cut(s)	426
BmsI	GCATC	1 cut(s)	139
BoxI	GACNNNNGTC	1 cut(s)	36
BpiI	GAAGAC	1 cut(s)	49
BplI	GAGNNNNNCTC	2 cut(s)	427, 459
BsaBI	GATNNNNATC	1 cut(s)	436
BsaHI	GRCGYC	2 cut(s)	33, 198
BsaJI	CCNNGG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	365
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse118I	RCCGGY	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	279
Bse8I	GATNNNNATC	1 cut(s)	436
BseDI	CCNNGG	1 cut(s)	144
BseGI	GGATG	2 cut(s)	154, 682
BseJI	GATNNNNATC	1 cut(s)	436
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseNI	ACTGG	1 cut(s)	279
BseRI	GAGGAG	1 cut(s)	200
Bsh1236I	CGCG	1 cut(s)	408
BshNI	GGYRCC	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	2 cut(s)	84, 366
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmAI	GTCTC	1 cut(s)	162
BsmBI	CGTCTC	1 cut(s)	162
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	6 cut(s)	108, 340, 437, 507, 543, 711
BspACI	CCGC	2 cut(s)	377, 441
BspFNI	CGCG	1 cut(s)	408
BspLI	GGNNCC	1 cut(s)	426
BspPI	GGATC	3 cut(s)	335, 432, 719
BspT107I	GGYRCC	1 cut(s)	424
BsrBI	CCGCTC	1 cut(s)	443
BsrFI	RCCGGY	1 cut(s)	83
BsrI	ACTGG	1 cut(s)	279
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	1 cut(s)	144
BssMI	GATC	6 cut(s)	108, 340, 437, 507, 543, 711
BssNI	GRCGYC	2 cut(s)	33, 198
Bst6I	CTCTTC	2 cut(s)	414, 678
BstACI	GRCGYC	2 cut(s)	33, 198
BstC8I	GCNNGC	1 cut(s)	457
BstDSI	CCRYGG	1 cut(s)	144
BstF5I	GGATG	2 cut(s)	154, 682
BstFNI	CGCG	1 cut(s)	408
BstKTI	GATC	6 cut(s)	111, 343, 440, 510, 546, 714
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	6 cut(s)	108, 340, 437, 507, 543, 711
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstPAI	GACNNNNGTC	1 cut(s)	36
BstSFI	CTRYAG	1 cut(s)	331
BstUI	CGCG	1 cut(s)	408
BstV2I	GAAGAC	1 cut(s)	49
BstX2I	RGATCY	3 cut(s)	340, 437, 711
BstYI	RGATCY	3 cut(s)	340, 437, 711
BsuI	GTATCC	1 cut(s)	236
BtgI	CCRYGG	1 cut(s)	144
BtrI	CACGTC	1 cut(s)	505
BtsCI	GGATG	2 cut(s)	154, 682
Cac8I	GCNNGC	1 cut(s)	457
CaiI	CAGNNNCTG	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	277
CseI	GACGC	2 cut(s)	206, 397
Csp6I	GTAC	3 cut(s)	138, 521, 603
CviAII	CATG	1 cut(s)	673
CviQI	GTAC	3 cut(s)	138, 521, 603
DpnI	GATC	6 cut(s)	110, 342, 439, 509, 545, 713
DpnII	GATC	6 cut(s)	108, 340, 437, 507, 543, 711
Eam1104I	CTCTTC	2 cut(s)	414, 678
EarI	CTCTTC	2 cut(s)	414, 678
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	277
Eco53kI	GAGCTC	1 cut(s)	190
Eco57I	CTGAAG	2 cut(s)	6, 174
EcoICRI	GAGCTC	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	162
FaeI	CATG	1 cut(s)	676
FaiI	YATR	7 cut(s)	51, 333, 484, 489, 561, 579, 674
FatI	CATG	1 cut(s)	672
FbaI	TGATCA	1 cut(s)	108
FblI	GTMKAC	1 cut(s)	411
FokI	GGATG	2 cut(s)	161, 689
FriOI	GRGCYC	1 cut(s)	192
FspBI	CTAG	1 cut(s)	450
HapII	CCGG	2 cut(s)	84, 366
HgaI	GACGC	2 cut(s)	206, 397
Hin1I	GRCGYC	2 cut(s)	33, 198
Hin1II	CATG	1 cut(s)	676
HincII	GTYRAC	1 cut(s)	412
HindII	GTYRAC	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	381
HinfI	GANTC	1 cut(s)	251
HpaII	CCGG	2 cut(s)	84, 366
HphI	GGTGA	1 cut(s)	692
Hpy166II	GTNNAC	2 cut(s)	140, 412
Hpy188III	TCNNGA	2 cut(s)	255, 717
Hpy8I	GTNNAC	2 cut(s)	140, 412
Hpy99I	CGWCG	5 cut(s)	42, 413, 416, 506, 573
HpyAV	CCTTC	3 cut(s)	149, 189, 679
HpyCH4IV	ACGT	2 cut(s)	33, 504
HpyCH4V	TGCA	2 cut(s)	165, 402
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpySE526I	ACGT	2 cut(s)	33, 504
Hsp92I	GRCGYC	2 cut(s)	33, 198
Hsp92II	CATG	1 cut(s)	676
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	6 cut(s)	108, 340, 437, 507, 543, 711
LmnI	GCTCC	3 cut(s)	187, 195, 368
LpnPI	CCDG	9 cut(s)	73, 97, 207, 260, 268, 323, 379, 457, 469
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	2 cut(s)	33, 504
MalI	GATC	6 cut(s)	110, 342, 439, 509, 545, 713
MbiI	CCGCTC	1 cut(s)	443
MboI	GATC	6 cut(s)	108, 340, 437, 507, 543, 711
MboII	GAAGA	8 cut(s)	3, 6, 9, 12, 49, 281, 431, 695
MflI	RGATCY	3 cut(s)	340, 437, 711
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	2 cut(s)	460, 539
MmeI	TCCRAC	3 cut(s)	23, 229, 551
MnlI	CCTC	7 cut(s)	178, 207, 275, 409, 415, 505, 593
MroXI	GAANNNNTTC	1 cut(s)	384
MslI	CAYNNNNRTG	1 cut(s)	671
MspI	CCGG	2 cut(s)	84, 366
MvnI	CGCG	1 cut(s)	408
MwoI	GCNNNNNNNGC	1 cut(s)	368
NdeII	GATC	6 cut(s)	108, 340, 437, 507, 543, 711
NlaIII	CATG	1 cut(s)	676
NlaIV	GGNNCC	1 cut(s)	426
NmeAIII	GCCGAG	1 cut(s)	453
PcsI	WCGNNNNNNNCGW	1 cut(s)	516
PdmI	GAANNNNTTC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	251
PflFI	GACNNNGTC	1 cut(s)	200
PshAI	GACNNNNGTC	1 cut(s)	36
Psp124BI	GAGCTC	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	426
PspPI	GGNCC	1 cut(s)	277
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	3 cut(s)	340, 437, 711
PsyI	GACNNNGTC	1 cut(s)	200
RsaI	GTAC	3 cut(s)	139, 522, 604
RsaNI	GTAC	3 cut(s)	138, 521, 603
RseI	CAYNNNNRTG	1 cut(s)	671
SacI	GAGCTC	1 cut(s)	192
SalI	GTCGAC	1 cut(s)	410
Sau3AI	GATC	6 cut(s)	108, 340, 437, 507, 543, 711
Sau96I	GGNCC	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	192
SfaNI	GCATC	1 cut(s)	139
SfcI	CTRYAG	1 cut(s)	331
SgrDI	CGTCGACG	1 cut(s)	410
SinI	GGWCC	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	671
SpeI	ACTAGT	1 cut(s)	449
Sse9I	AATT	2 cut(s)	460, 539
SsiI	CCGC	2 cut(s)	377, 441
SspMI	CTAG	1 cut(s)	450
SstI	GAGCTC	1 cut(s)	192
TaiI	ACGT	2 cut(s)	36, 507
TaqI	TCGA	4 cut(s)	212, 267, 411, 510
TasI	AATT	2 cut(s)	460, 539
TatI	WGTACW	1 cut(s)	137
TfiI	GAWTC	1 cut(s)	251
TspDTI	ATGAA	2 cut(s)	510, 661
TspGWI	ACGGA	2 cut(s)	26, 333
Tth111I	GACNNNGTC	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	277
XmiI	GTMKAC	1 cut(s)	411
XmnI	GAANNNNTTC	1 cut(s)	384
XspI	CTAG	1 cut(s)	450
ZraI	GACGTC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.