Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010601

Physical Location & Seq

Genomic Coordinates Forward (+)

26440977 .. 26441465

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00305800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCTGCTGCTTCGTCTTCATCATATGAACGCAGTTTCAAATACGACGTTTTCATCAATTTCAGAGGCGAAGACACACGTAGGTGTTTCGTCTGCCATCTTTACGAAGCTCTGAAACAGAAAGCACTCAACACCTTTATAGATTCGGAAGAGCTTAGAAAAGGCGACGACCTTTCGGAGCTACTCAAAGCTATTCAAGACTCGAGGCTTTCGATTGTAGTTTTCTCTAAAGACTATGCATCTTCTACATGGTGCTTAAAAGAACTGGTCCAGATCTTGGAGTGTGTGGATACGCAGAAGCAGAAAGTGGTGCCGATTTTCTATGAAACAGATCCTTCCGATGTTCGCAAACTGAAGGGGAGTTTTGCAGAAGCTTTTGCAAAACATGAATGCGATTCCAGTGTCGTCAACGAAGAGTTGGAGAGCTGGAAGTCCAGTTTAATGAGAGCCACCAATTTATCCGGCTGCGACTCCAGAAATTATCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 NB-ARC TIR

Protein Analysis

162

Amino Acids

18.56

Weight (kDa)

5.3

Isoelectric Point (pI)

50.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	14 - 161	1.9e-47	TIR domain
TIR_2	PF13676	17 - 112	1.4e-17	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010601)

Species	Orthologous Gene IDs
malus_domestica	MD01G1189400.v1.1 MD01G1189500.v1.1 MD01G1190900.v1.1 MD02G1115500.v1.1 MD07G1015200.v1.1
prunus_persica	Prupe.7G017000_v2.0.a1
pyrus_communis	pycom01g20170 pycom01g20180
rosa_chinensis	RchiOBHm_Chr1g0375961 RchiOBHm_Chr6g0246441 RchiOBHm_Chr6g0250821
rosa_laevigata	RLG00000002905 RLG00000026640 RLG00000026645 RLG00000028594
rosa_multiflora	Rmu_sc0001066.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305800
rosa_rugosa	Rorug02G0306400 Rorug05G0497800 Rorug07G0269300
rosa_wichuraiana	Rw6G016530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	310
AccB7I	CCANNNNNTGG	1 cut(s)	277
AclWI	GGATC	1 cut(s)	326
AcuI	CTGAAG	1 cut(s)	374
AfiI	CCNNNNNNNGG	1 cut(s)	277
AflIII	ACRYGT	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	40, 197
AleI	CACNNNNGTG	1 cut(s)	82
AluBI	AGCT	6 cut(s)	110, 154, 181, 191, 374, 426
AluI	AGCT	6 cut(s)	110, 154, 181, 191, 374, 426
AlwI	GGATC	1 cut(s)	326
Ama87I	CYCGRG	1 cut(s)	202
ApeKI	GCWGC	3 cut(s)	5, 8, 465
AspS9I	GGNCC	1 cut(s)	268
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	310
BbsI	GAAGAC	2 cut(s)	9, 78
BbvI	GCAGC	1 cut(s)	452
BccI	CCATC	1 cut(s)	105
BciVI	GTATCC	1 cut(s)	283
BfuI	GTATCC	1 cut(s)	283
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	3 cut(s)	6, 9, 466
BlsI	GCNGC	3 cut(s)	7, 10, 467
Bme18I	GGWCC	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	268
BmiI	GGNNCC	1 cut(s)	312
BmsI	GCATC	1 cut(s)	248
BpiI	GAAGAC	2 cut(s)	9, 78
BpmI	CTGGAG	1 cut(s)	457
BsaAI	YACGTR	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse1I	ACTGG	3 cut(s)	270, 399, 435
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseNI	ACTGG	3 cut(s)	270, 399, 435
BseXI	GCAGC	1 cut(s)	452
BshNI	GGYRCC	1 cut(s)	310
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	462
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmI	GAATGC	1 cut(s)	395
BsoBI	CYCGRG	1 cut(s)	202
Bsp143I	GATC	2 cut(s)	273, 331
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	326
BspQI	GCTCTTC	1 cut(s)	144
BspT107I	GGYRCC	1 cut(s)	310
BsrI	ACTGG	3 cut(s)	270, 399, 435
BssMI	GATC	2 cut(s)	273, 331
Bst6I	CTCTTC	2 cut(s)	144, 408
BstBAI	YACGTR	1 cut(s)	80
BstDEI	CTNAG	1 cut(s)	155
BstKTI	GATC	2 cut(s)	276, 334
BstMBI	GATC	2 cut(s)	273, 331
BstV1I	GCAGC	1 cut(s)	452
BstV2I	GAAGAC	2 cut(s)	9, 78
BstX2I	RGATCY	2 cut(s)	273, 331
BstYI	RGATCY	2 cut(s)	273, 331
BsuI	GTATCC	1 cut(s)	283
BtsIMutI	CAGTG	1 cut(s)	406
Cfr13I	GGNCC	1 cut(s)	268
CviAII	CATG	2 cut(s)	249, 386
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	2 cut(s)	275, 333
DpnII	GATC	2 cut(s)	273, 331
Eam1104I	CTCTTC	2 cut(s)	144, 408
EarI	CTCTTC	2 cut(s)	144, 408
Eco47I	GGWCC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	374
Eco88I	CYCGRG	1 cut(s)	202
EcoT22I	ATGCAT	1 cut(s)	241
FaeI	CATG	2 cut(s)	252, 389
FaiI	YATR	7 cut(s)	25, 27, 140, 237, 250, 324, 387
FatI	CATG	2 cut(s)	248, 385
FauNDI	CATATG	1 cut(s)	25
Fnu4HI	GCNGC	3 cut(s)	6, 9, 466
Fsp4HI	GCNGC	3 cut(s)	6, 9, 466
GluI	GCNGC	3 cut(s)	6, 9, 466
GsuI	CTGGAG	1 cut(s)	457
HapII	CCGG	1 cut(s)	462
Hin1II	CATG	2 cut(s)	252, 389
HincII	GTYRAC	1 cut(s)	409
HindII	GTYRAC	1 cut(s)	409
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	4 cut(s)	143, 200, 395, 470
HpaII	CCGG	1 cut(s)	462
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	5 cut(s)	65, 114, 148, 178, 340
Hpy188III	TCNNGA	3 cut(s)	197, 271, 474
Hpy8I	GTNNAC	1 cut(s)	409
Hpy99I	CGWCG	2 cut(s)	50, 170
HpyAV	CCTTC	2 cut(s)	345, 349
HpyCH4IV	ACGT	2 cut(s)	48, 79
HpyCH4V	TGCA	3 cut(s)	239, 368, 380
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	2 cut(s)	48, 79
Hsp92II	CATG	2 cut(s)	252, 389
Kzo9I	GATC	2 cut(s)	273, 331
LguI	GCTCTTC	1 cut(s)	144
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	6 cut(s)	251, 284, 412, 412, 448, 475
Lsp1109I	GCAGC	1 cut(s)	452
LweI	GCATC	1 cut(s)	248
MaeII	ACGT	2 cut(s)	48, 79
MalI	GATC	2 cut(s)	275, 333
MboI	GATC	2 cut(s)	273, 331
MboII	GAAGA	5 cut(s)	9, 83, 161, 234, 425
MflI	RGATCY	2 cut(s)	273, 331
MluCI	AATT	3 cut(s)	58, 454, 478
MlyI	GAGTC	2 cut(s)	194, 464
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	2 cut(s)	59, 198
Mph1103I	ATGCAT	1 cut(s)	241
MseI	TTAA	2 cut(s)	257, 440
MslI	CAYNNNNRTG	1 cut(s)	82
MspI	CCGG	1 cut(s)	462
Mva1269I	GAATGC	1 cut(s)	395
NdeI	CATATG	1 cut(s)	25
NdeII	GATC	2 cut(s)	273, 331
NlaIII	CATG	2 cut(s)	252, 389
NlaIV	GGNNCC	1 cut(s)	312
NsiI	ATGCAT	1 cut(s)	241
OliI	CACNNNNGTG	1 cut(s)	82
PaeR7I	CTCGAG	1 cut(s)	202
PciSI	GCTCTTC	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PctI	GAATGC	1 cut(s)	395
PfeI	GAWTC	2 cut(s)	143, 395
PflMI	CCANNNNNTGG	1 cut(s)	277
PkrI	GCNGC	3 cut(s)	7, 10, 467
PleI	GAGTC	2 cut(s)	194, 464
PpsI	GAGTC	2 cut(s)	194, 464
Ppu21I	YACGTR	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	1 cut(s)	268
PspXI	VCTCGAGB	1 cut(s)	202
PsuI	RGATCY	2 cut(s)	273, 331
RseI	CAYNNNNRTG	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	257, 440
SatI	GCNGC	3 cut(s)	6, 9, 466
Sau3AI	GATC	2 cut(s)	273, 331
Sau96I	GGNCC	1 cut(s)	268
SchI	GAGTC	2 cut(s)	194, 464
SfaNI	GCATC	1 cut(s)	248
Sfr274I	CTCGAG	1 cut(s)	202
SinI	GGWCC	1 cut(s)	268
SlaI	CTCGAG	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
Sse9I	AATT	3 cut(s)	58, 454, 478
TaiI	ACGT	2 cut(s)	51, 82
TaqI	TCGA	2 cut(s)	203, 212
TasI	AATT	3 cut(s)	58, 454, 478
TfiI	GAWTC	2 cut(s)	143, 395
Tru1I	TTAA	2 cut(s)	257, 440
Tru9I	TTAA	2 cut(s)	257, 440
TscAI	CASTG	1 cut(s)	406
TseI	GCWGC	3 cut(s)	5, 8, 465
TspDTI	ATGAA	5 cut(s)	9, 42, 43, 339, 402
TspRI	CASTG	1 cut(s)	406
Van91I	CCANNNNNTGG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	268
XhoI	CTCGAG	1 cut(s)	202
Zsp2I	ATGCAT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.