Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0010601

Physical Location & Seq

Genomic Coordinates Forward (+)

28934572 .. 28936616

Gene Structure 2045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1190900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCTGTTTCTTCTTTTTCTTCAGTATCTGACGACGTCCGTCGTTGGAAATATGATGTCTTCGTCAGTTTCAGAGGCGAAGACACCGGCGGGGGTTTTGTCAGCCATCTGCTCAGAGCTTTCAAGCAGAAATCAATCAGTACATCCGTGGATGCTGAAGATATGTGCAGAGGCGACCGCCTTTCGGAAGAGCTCCGAAAACACATCCAACAGTCGAGGCTTTCGATTGTAGTTTTTTCTCAAAACTACGCTTCTTCCAGACGGTGCCTCAGAGAACTGGCCCAAATGGTGGAACAAGTGAAGATGACTGGCCAGGTGTTGGTGCCCGTTTTCTATGGAGTAGAACCGTATGTTGTTCGTAGAGCCACCGGACCTTTTGCGGAAGCTTTCGCAAGATATGACTGCGAAATGGAAGAGGAGGAAGTGTGCACTTGGAGGAAAGCCCTAACTGCTGCTGCCAGTTATTTTGGCTGGTATATAGAAAATTATAGGGATGATGCCGAGCTGATTGAGGAAATCGTACAATGTGTTTTTAACAAATTGATCCGCTGGTCATCGTTTGACGGTGGTTGGAAATATGATGTTTTTCTCAATTTTAGAGGTGAAGACACTCGCAAGAGTTTTTGCAGCCATCTCTACAAAGCTCTGTATCAAAAAGTAATCAACACCTTCATGGATGATGAAGAGCTTAGAAAAGGCAACAGCCTTTCGGAGCTCCTGAAATGTATTAAACAGTCGCGAGTTTCGATTGTTGTTTTTTCTGCAGACTACGCTTCTTCCACATGGTGCTTAAAAGAACTCGTGCAGATCCTCAAATGCATGGATGAACATAATCAGATGGTGGTCCCTGTTTTCTACGAAGTTGATCCATCTCAAGTTTGTAGGCCGGAAGCTTTTACTAAACACGATCGCGATTCTAAGGTGGAGATGGAAGAGGTGCAGAGCTGGATGTTGGCCCTAACTAGAGCCACCAATTTAACTCTACCTCGCTGGGATTCACGAAACTATGACGATGATGCCAAGCTGATTGAGGACATTGTACAACATATTTCGAGAGAGCTTCCCCGTTTTACCAGACTGCAGATGGGCCATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 NB-ARC TIR

Protein Analysis

366

Amino Acids

42.54

Weight (kDa)

5.66

Isoelectric Point (pI)

59.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	17 - 181	2.3e-46	TIR domain
TIR_2	PF13676	20 - 114	5.2e-15	TIR domain
TIR	PF01582	192 - 355	4.2e-48	TIR domain
TIR_2	PF13676	195 - 296	3.9e-14	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010601)

Species	Orthologous Gene IDs
malus_domestica	MD01G1189400.v1.1 MD01G1189500.v1.1 MD01G1190900.v1.1 MD02G1115500.v1.1 MD07G1015200.v1.1
prunus_persica	Prupe.7G017000_v2.0.a1
pyrus_communis	pycom01g20170 pycom01g20180
rosa_chinensis	RchiOBHm_Chr1g0375961 RchiOBHm_Chr6g0246441 RchiOBHm_Chr6g0250821
rosa_laevigata	RLG00000002905 RLG00000026640 RLG00000026645 RLG00000028594
rosa_multiflora	Rmu_sc0001066.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305800
rosa_rugosa	Rorug02G0306400 Rorug05G0497800 Rorug07G0269300
rosa_wichuraiana	Rw6G016530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
AccB1I	GGYRCC	2 cut(s)	264, 322
AccB7I	CCANNNNNTGG	2 cut(s)	289, 319
AccII	CGCG	2 cut(s)	739, 912
AciI	CCGC	4 cut(s)	90, 178, 380, 547
AclWI	GGATC	3 cut(s)	538, 802, 860
AcoI	YGGCCR	1 cut(s)	310
AcuI	CTGAAG	2 cut(s)	6, 177
AcyI	GRCGYC	1 cut(s)	36
AdeI	CACNNNGTG	1 cut(s)	786
AfaI	GTAC	3 cut(s)	142, 522, 1041
AfiI	CCNNNNNNNGG	3 cut(s)	184, 289, 319
AgsI	TTSAA	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	312
Alw21I	GWGCWC	3 cut(s)	195, 431, 717
Alw44I	GTGCAC	1 cut(s)	427
AlwI	GGATC	3 cut(s)	538, 802, 860
AlwNI	CAGNNNCTG	1 cut(s)	29
AoxI	GGCC	5 cut(s)	279, 310, 884, 954, 1087
ApaLI	GTGCAC	1 cut(s)	427
ApeKI	GCWGC	3 cut(s)	452, 455, 627
AspS9I	GGNCC	5 cut(s)	280, 371, 844, 955, 1087
AsuHPI	GGTGA	1 cut(s)	614
AvaII	GGWCC	2 cut(s)	371, 844
BaeGI	GKGCMC	2 cut(s)	327, 431
BalI	TGGCCA	1 cut(s)	312
BanI	GGYRCC	2 cut(s)	264, 322
BanII	GRGCYC	2 cut(s)	195, 717
BauI	CACGAG	1 cut(s)	800
BbsI	GAAGAC	3 cut(s)	52, 87, 612
Bbv12I	GWGCWC	3 cut(s)	195, 431, 717
BbvI	GCAGC	3 cut(s)	439, 442, 639
BccI	CCATC	6 cut(s)	114, 639, 832, 877, 922, 1078
BciT130I	CCWGG	1 cut(s)	314
BfaI	CTAG	1 cut(s)	963
BfmI	CTRYAG	2 cut(s)	762, 1079
BisI	GCNGC	3 cut(s)	453, 456, 628
BlsI	GCNGC	3 cut(s)	454, 457, 629
Bme1390I	CCNGG	1 cut(s)	314
Bme18I	GGWCC	2 cut(s)	371, 844
BmgT120I	GGNCC	5 cut(s)	280, 371, 844, 955, 1087
BmiI	GGNNCC	3 cut(s)	266, 324, 846
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	3 cut(s)	142, 487, 1006
BoxI	GACNNNNGTC	1 cut(s)	39
BpiI	GAAGAC	3 cut(s)	52, 87, 612
BpuEI	CTTGAG	1 cut(s)	858
BsaHI	GRCGYC	1 cut(s)	36
BsaJI	CCNNGG	1 cut(s)	147
BsaWI	WCCGGW	1 cut(s)	368
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	3 cut(s)	184, 289, 319
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	3 cut(s)	282, 313, 459
BseBI	CCWGG	1 cut(s)	314
BseDI	CCNNGG	1 cut(s)	147
BseGI	GGATG	7 cut(s)	143, 157, 204, 499, 682, 829, 954
BseLI	CCNNNNNNNGG	3 cut(s)	184, 289, 319
BseMII	CTCAG	2 cut(s)	127, 283
BseNI	ACTGG	3 cut(s)	282, 313, 459
BseRI	GAGGAG	1 cut(s)	431
BseSI	GKGCMC	2 cut(s)	327, 431
BseXI	GCAGC	3 cut(s)	439, 442, 639
BseYI	CCCAGC	1 cut(s)	990
BsgI	GTGCAG	3 cut(s)	187, 824, 959
Bsh1236I	CGCG	2 cut(s)	739, 912
Bsh1285I	CGRYCG	2 cut(s)	178, 910
BshFI	GGCC	5 cut(s)	281, 312, 886, 956, 1089
BshNI	GGYRCC	2 cut(s)	264, 322
BsiEI	CGRYCG	2 cut(s)	178, 910
BsiHKAI	GWGCWC	3 cut(s)	195, 431, 717
BsiSI	CCGG	3 cut(s)	87, 369, 887
BslFI	GGGAC	1 cut(s)	830
BslI	CCNNNNNNNGG	3 cut(s)	184, 289, 319
BsmFI	GGGAC	1 cut(s)	830
BsnI	GGCC	5 cut(s)	281, 312, 886, 956, 1089
Bsp1286I	GDGCHC	4 cut(s)	195, 327, 431, 717
Bsp1407I	TGTACA	1 cut(s)	1039
Bsp143I	GATC	4 cut(s)	543, 807, 865, 907
Bsp68I	TCGCGA	2 cut(s)	739, 912
BspACI	CCGC	4 cut(s)	90, 178, 380, 547
BspANI	GGCC	5 cut(s)	281, 312, 886, 956, 1089
BspCNI	CTCAG	2 cut(s)	126, 282
BspFNI	CGCG	2 cut(s)	739, 912
BspLI	GGNNCC	3 cut(s)	266, 324, 846
BspMAI	CTGCAG	2 cut(s)	766, 1083
BspPI	GGATC	3 cut(s)	538, 802, 860
BspQI	GCTCTTC	2 cut(s)	183, 678
BspT107I	GGYRCC	2 cut(s)	264, 322
BsrFI	RCCGGY	1 cut(s)	86
BsrGI	TGTACA	1 cut(s)	1039
BsrI	ACTGG	3 cut(s)	282, 313, 459
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	147
BssMI	GATC	4 cut(s)	543, 807, 865, 907
BssNI	GRCGYC	1 cut(s)	36
BssSI	CACGAG	1 cut(s)	800
Bst2BI	CACGAG	1 cut(s)	800
Bst2UI	CCWGG	1 cut(s)	314
Bst4CI	ACNGT	5 cut(s)	213, 264, 348, 566, 735
Bst6I	CTCTTC	4 cut(s)	183, 408, 678, 927
BstACI	GRCGYC	1 cut(s)	36
BstAUI	TGTACA	1 cut(s)	1039
BstDEI	CTNAG	4 cut(s)	113, 269, 689, 918
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	7 cut(s)	143, 157, 204, 499, 682, 829, 954
BstFNI	CGCG	2 cut(s)	739, 912
BstKTI	GATC	4 cut(s)	546, 810, 868, 910
BstMBI	GATC	4 cut(s)	543, 807, 865, 907
BstMCI	CGRYCG	2 cut(s)	178, 910
BstMWI	GCNNNNNNNGC	2 cut(s)	449, 770
BstNI	CCWGG	1 cut(s)	314
BstPAI	GACNNNNGTC	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	312
BstSFI	CTRYAG	2 cut(s)	762, 1079
BstSLI	GKGCMC	2 cut(s)	327, 431
BstUI	CGCG	2 cut(s)	739, 912
BstV1I	GCAGC	3 cut(s)	439, 442, 639
BstV2I	GAAGAC	3 cut(s)	52, 87, 612
BstX2I	RGATCY	1 cut(s)	807
BstYI	RGATCY	1 cut(s)	807
BsuRI	GGCC	5 cut(s)	281, 312, 886, 956, 1089
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	7 cut(s)	143, 157, 204, 499, 682, 829, 954
BtuMI	TCGCGA	2 cut(s)	739, 912
CaiI	CAGNNNCTG	1 cut(s)	29
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	5 cut(s)	280, 371, 844, 955, 1087
Csp6I	GTAC	3 cut(s)	141, 521, 1040
CviAII	CATG	4 cut(s)	673, 783, 820, 1091
CviQI	GTAC	3 cut(s)	141, 521, 1040
DdeI	CTNAG	4 cut(s)	113, 269, 689, 918
DpnI	GATC	4 cut(s)	545, 809, 867, 909
DpnII	GATC	4 cut(s)	543, 807, 865, 907
DraIII	CACNNNGTG	1 cut(s)	786
EaeI	YGGCCR	1 cut(s)	310
Eam1104I	CTCTTC	4 cut(s)	183, 408, 678, 927
EarI	CTCTTC	4 cut(s)	183, 408, 678, 927
Ecl136II	GAGCTC	2 cut(s)	193, 715
Eco24I	GRGCYC	2 cut(s)	195, 717
Eco47I	GGWCC	2 cut(s)	371, 844
Eco53kI	GAGCTC	2 cut(s)	193, 715
Eco57I	CTGAAG	2 cut(s)	6, 177
EcoICRI	GAGCTC	2 cut(s)	193, 715
EcoRII	CCWGG	1 cut(s)	312
EcoT22I	ATGCAT	1 cut(s)	821
EcoT38I	GRGCYC	2 cut(s)	195, 717
FaeI	CATG	4 cut(s)	676, 786, 823, 1094
FaqI	GGGAC	1 cut(s)	830
FatI	CATG	4 cut(s)	672, 782, 819, 1090
FauI	CCCGC	1 cut(s)	83
Fnu4HI	GCNGC	3 cut(s)	453, 456, 628
FokI	GGATG	7 cut(s)	130, 164, 191, 506, 689, 836, 961
FriOI	GRGCYC	2 cut(s)	195, 717
Fsp4HI	GCNGC	3 cut(s)	453, 456, 628
FspBI	CTAG	1 cut(s)	963
GluI	GCNGC	3 cut(s)	453, 456, 628
GsaI	CCCAGC	1 cut(s)	994
HaeIII	GGCC	5 cut(s)	281, 312, 886, 956, 1089
HapII	CCGG	3 cut(s)	87, 369, 887
Hin1I	GRCGYC	1 cut(s)	36
Hin1II	CATG	4 cut(s)	676, 786, 823, 1094
HindIII	AAGCTT	2 cut(s)	384, 891
HinfI	GANTC	2 cut(s)	914, 995
HpaII	CCGG	3 cut(s)	87, 369, 887
HphI	GGTGA	1 cut(s)	614
Hpy166II	GTNNAC	1 cut(s)	429
Hpy188I	TCNGA	8 cut(s)	31, 74, 116, 187, 197, 272, 712, 837
Hpy188III	TCNNGA	6 cut(s)	258, 718, 738, 911, 999, 1053
Hpy8I	GTNNAC	1 cut(s)	429
Hpy99I	CGWCG	2 cut(s)	38, 45
HpyAV	CCTTC	1 cut(s)	679
HpyCH4III	ACNGT	5 cut(s)	213, 264, 348, 566, 735
HpyCH4IV	ACGT	1 cut(s)	36
HpyCH4V	TGCA	8 cut(s)	168, 429, 627, 764, 805, 819, 940, 1081
HpyF10VI	GCNNNNNNNGC	2 cut(s)	449, 770
HpyF3I	CTNAG	4 cut(s)	113, 269, 689, 918
HpySE526I	ACGT	1 cut(s)	36
Hsp92I	GRCGYC	1 cut(s)	36
Hsp92II	CATG	4 cut(s)	676, 786, 823, 1094
Kzo9I	GATC	4 cut(s)	543, 807, 865, 907
LguI	GCTCTTC	2 cut(s)	183, 678
LmnI	GCTCC	3 cut(s)	198, 712, 720
Lsp1109I	GCAGC	3 cut(s)	439, 442, 639
LweI	GCATC	3 cut(s)	142, 487, 1006
MaeI	CTAG	1 cut(s)	963
MaeII	ACGT	1 cut(s)	36
MalI	GATC	4 cut(s)	545, 809, 867, 909
MboI	GATC	4 cut(s)	543, 807, 865, 907
MflI	RGATCY	1 cut(s)	807
MhlI	GDGCHC	4 cut(s)	195, 327, 431, 717
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	4 cut(s)	484, 539, 592, 973
MluNI	TGGCCA	1 cut(s)	312
MmeI	TCCRAC	3 cut(s)	26, 232, 551
Mox20I	TGGCCA	1 cut(s)	312
Mph1103I	ATGCAT	1 cut(s)	821
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	4 cut(s)	534, 729, 791, 977
MslI	CAYNNNNRTG	1 cut(s)	671
Msp20I	TGGCCA	1 cut(s)	312
MspA1I	CMGCKG	1 cut(s)	549
MspI	CCGG	3 cut(s)	87, 369, 887
MspR9I	CCNGG	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	314
MvnI	CGCG	2 cut(s)	739, 912
MwoI	GCNNNNNNNGC	2 cut(s)	449, 770
NdeII	GATC	4 cut(s)	543, 807, 865, 907
NlaIII	CATG	4 cut(s)	676, 786, 823, 1094
NlaIV	GGNNCC	3 cut(s)	266, 324, 846
NmeAIII	GCCGAG	1 cut(s)	526
NruI	TCGCGA	2 cut(s)	739, 912
NsiI	ATGCAT	1 cut(s)	821
PciSI	GCTCTTC	2 cut(s)	183, 678
PcsI	WCGNNNNNNNCGW	2 cut(s)	221, 743
PfeI	GAWTC	2 cut(s)	914, 995
PflFI	GACNNNGTC	1 cut(s)	35
PflMI	CCANNNNNTGG	2 cut(s)	289, 319
PkrI	GCNGC	3 cut(s)	454, 457, 629
Ple19I	CGATCG	1 cut(s)	910
PshAI	GACNNNNGTC	1 cut(s)	39
Psp124BI	GAGCTC	2 cut(s)	195, 717
Psp6I	CCWGG	1 cut(s)	312
PspFI	CCCAGC	1 cut(s)	990
PspGI	CCWGG	1 cut(s)	312
PspN4I	GGNNCC	3 cut(s)	266, 324, 846
PspPI	GGNCC	5 cut(s)	280, 371, 844, 955, 1087
PstI	CTGCAG	2 cut(s)	766, 1083
PstNI	CAGNNNCTG	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	807
PsyI	GACNNNGTC	1 cut(s)	35
PvuI	CGATCG	1 cut(s)	910
RruI	TCGCGA	2 cut(s)	739, 912
RsaI	GTAC	3 cut(s)	142, 522, 1041
RsaNI	GTAC	3 cut(s)	141, 521, 1040
RseI	CAYNNNNRTG	1 cut(s)	671
SacI	GAGCTC	2 cut(s)	195, 717
SapI	GCTCTTC	2 cut(s)	183, 678
SaqAI	TTAA	4 cut(s)	534, 729, 791, 977
SatI	GCNGC	3 cut(s)	453, 456, 628
Sau3AI	GATC	4 cut(s)	543, 807, 865, 907
Sau96I	GGNCC	5 cut(s)	280, 371, 844, 955, 1087
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	4 cut(s)	195, 327, 431, 717
SfaNI	GCATC	3 cut(s)	142, 487, 1006
SfcI	CTRYAG	2 cut(s)	762, 1079
SgrAI	CRCCGGYG	1 cut(s)	86
SinI	GGWCC	2 cut(s)	371, 844
SmiMI	CAYNNNNRTG	1 cut(s)	671
SmlI	CTYRAG	1 cut(s)	873
SmoI	CTYRAG	1 cut(s)	873
Sse9I	AATT	4 cut(s)	484, 539, 592, 973
SsiI	CCGC	4 cut(s)	90, 178, 380, 547
SspMI	CTAG	1 cut(s)	963
SstI	GAGCTC	2 cut(s)	195, 717
StyD4I	CCNGG	1 cut(s)	312
TaaI	ACNGT	5 cut(s)	213, 264, 348, 566, 735
TaiI	ACGT	1 cut(s)	39
TaqI	TCGA	4 cut(s)	215, 224, 746, 1052
TasI	AATT	4 cut(s)	484, 539, 592, 973
TatI	WGTACW	2 cut(s)	140, 1039
TfiI	GAWTC	2 cut(s)	914, 995
Tru1I	TTAA	4 cut(s)	534, 729, 791, 977
Tru9I	TTAA	4 cut(s)	534, 729, 791, 977
TseI	GCWGC	3 cut(s)	452, 455, 627
TspDTI	ATGAA	3 cut(s)	661, 696, 840
TspGWI	ACGGA	2 cut(s)	29, 136
Tth111I	GACNNNGTC	1 cut(s)	35
Van91I	CCANNNNNTGG	2 cut(s)	289, 319
VneI	GTGCAC	1 cut(s)	427
VpaK11BI	GGWCC	2 cut(s)	371, 844
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1081
XspI	CTAG	1 cut(s)	963
ZraI	GACGTC	1 cut(s)	37
Zsp2I	ATGCAT	1 cut(s)	821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.