Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0010601

Physical Location & Seq

Genomic Coordinates Reverse (-)

4572110 .. 4572592

Gene Structure 483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026645

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCTTCTTCATCGTCAGCTGGTGGCCGTTGCAAGTATGATGTGTTCATCAGTTTTAGAGGGGAAGACACCCGCAAGATCTTCGTCGGTCATCTTTACAGAGCTCTGCGACAGAAAGCAATCAATACTTATATTGATTCTGAAGAGCTCAGTAAAGGCAACAAGATTTCGGAGCTACTCACATCCATTGAGGACTCGAGACTTTCGATTGTAGTTTTATCTCAAAACTATGCATCTTCCACTTGGTGCTTAAAAGACCTCGTCAAAATCCTGGATTGCATGGATACGAAGAAGCAGATAGTGGTGCCCATCTTCTACCAAGTAGATCCCTCTGATCTACGAAAACACAATGGGAAATTTGCAGAAGCCTTTGCCAAACATGGAGAAAATTCTAACCTCGACAAGGAAGAGTTGGAGAGCTGGAGGTCCGCTCTAACTAGAGTAGCGGATCTATCTGGCTGGGATTCGCGCAAATATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_3 NB-ARC TIR

Protein Analysis

161

Amino Acids

18.21

Weight (kDa)

7.69

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	12 - 158	2.1e-49	TIR domain
TIR_2	PF13676	15 - 114	6.8e-16	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010601)

Species	Orthologous Gene IDs
malus_domestica	MD01G1189400.v1.1 MD01G1189500.v1.1 MD01G1190900.v1.1 MD02G1115500.v1.1 MD07G1015200.v1.1
prunus_persica	Prupe.7G017000_v2.0.a1
pyrus_communis	pycom01g20170 pycom01g20180
rosa_chinensis	RchiOBHm_Chr1g0375961 RchiOBHm_Chr6g0246441 RchiOBHm_Chr6g0250821
rosa_laevigata	RLG00000002905 RLG00000026640 RLG00000026645 RLG00000028594
rosa_multiflora	Rmu_sc0001066.1_g000002
rosa_roxburghii	Rroxscaffold_4G00305800
rosa_rugosa	Rorug02G0306400 Rorug05G0497800 Rorug07G0269300
rosa_wichuraiana	Rw6G016530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	304
AccBSI	CCGCTC	1 cut(s)	431
AccII	CGCG	1 cut(s)	469
AciI	CCGC	3 cut(s)	73, 429, 446
AclWI	GGATC	2 cut(s)	320, 456
AcoI	YGGCCR	1 cut(s)	25
AcsI	RAATTY	2 cut(s)	356, 388
AcuI	CTGAAG	1 cut(s)	162
AdeI	CACNNNGTG	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	5 cut(s)	20, 104, 148, 175, 420
AluI	AGCT	5 cut(s)	20, 104, 148, 175, 420
Alw21I	GWGCWC	2 cut(s)	106, 150
Alw26I	GTCTC	1 cut(s)	193
AlwI	GGATC	2 cut(s)	320, 456
Ama87I	CYCGRG	1 cut(s)	196
AoxI	GGCC	1 cut(s)	25
ApoI	RAATTY	2 cut(s)	356, 388
AspLEI	GCGC	1 cut(s)	471
AspS9I	GGNCC	1 cut(s)	426
AvaI	CYCGRG	1 cut(s)	196
AvaII	GGWCC	1 cut(s)	426
BaeGI	GKGCMC	1 cut(s)	309
BanI	GGYRCC	1 cut(s)	304
BanII	GRGCYC	2 cut(s)	106, 150
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	2 cut(s)	106, 150
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	1 cut(s)	12
BcgI	CGANNNNNNTGC	2 cut(s)	64, 98
BciT130I	CCWGG	1 cut(s)	272
BciVI	GTATCC	1 cut(s)	277
BcoDI	GTCTC	1 cut(s)	193
BfaI	CTAG	1 cut(s)	438
BfuI	GTATCC	1 cut(s)	277
BglII	AGATCT	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	1 cut(s)	426
BmeT110I	CYCGRG	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	426
BmiI	GGNNCC	1 cut(s)	306
BmrFI	CCNGG	1 cut(s)	272
BmsI	GCATC	1 cut(s)	242
BpiI	GAAGAC	1 cut(s)	72
BplI	GAGNNNNNCTC	2 cut(s)	415, 447
BpmI	CTGGAG	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	1 cut(s)	403
BseBI	CCWGG	1 cut(s)	272
BseGI	GGATG	1 cut(s)	182
BseLI	CCNNNNNNNGG	1 cut(s)	403
BseMII	CTCAG	1 cut(s)	163
BseSI	GKGCMC	1 cut(s)	309
BseYI	CCCAGC	1 cut(s)	459
Bsh1236I	CGCG	1 cut(s)	469
BshFI	GGCC	1 cut(s)	27
BshNI	GGYRCC	1 cut(s)	304
BsiHKAI	GWGCWC	2 cut(s)	106, 150
BsiHKCI	CYCGRG	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	403
BsmAI	GTCTC	1 cut(s)	193
BsnI	GGCC	1 cut(s)	27
BsoBI	CYCGRG	1 cut(s)	196
Bsp1286I	GDGCHC	3 cut(s)	106, 150, 309
Bsp143I	GATC	4 cut(s)	78, 325, 334, 448
BspACI	CCGC	3 cut(s)	73, 429, 446
BspANI	GGCC	1 cut(s)	27
BspCNI	CTCAG	1 cut(s)	162
BspFNI	CGCG	1 cut(s)	469
BspLI	GGNNCC	1 cut(s)	306
BspPI	GGATC	2 cut(s)	320, 456
BspQI	GCTCTTC	1 cut(s)	138
BspT107I	GGYRCC	1 cut(s)	304
BsrBI	CCGCTC	1 cut(s)	431
BssMI	GATC	4 cut(s)	78, 325, 334, 448
Bst2UI	CCWGG	1 cut(s)	272
Bst6I	CTCTTC	2 cut(s)	138, 402
BstDEI	CTNAG	1 cut(s)	149
BstENI	CCTNNNNNAGG	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	182
BstFNI	CGCG	1 cut(s)	469
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	4 cut(s)	81, 328, 337, 451
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	4 cut(s)	78, 325, 334, 448
BstNI	CCWGG	1 cut(s)	272
BstSCI	CCNGG	1 cut(s)	270
BstSLI	GKGCMC	1 cut(s)	309
BstUI	CGCG	1 cut(s)	469
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	3 cut(s)	78, 325, 448
BstYI	RGATCY	3 cut(s)	78, 325, 448
BsuI	GTATCC	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	182
CfoI	GCGC	1 cut(s)	471
Cfr13I	GGNCC	1 cut(s)	426
CviAII	CATG	2 cut(s)	280, 380
CviJI	RGCY	9 cut(s)	5, 20, 27, 104, 148, 175, 368, 420, 459
CviKI_1	RGCY	9 cut(s)	5, 20, 27, 104, 148, 175, 368, 420, 459
DdeI	CTNAG	1 cut(s)	149
DpnI	GATC	4 cut(s)	80, 327, 336, 450
DpnII	GATC	4 cut(s)	78, 325, 334, 448
DraIII	CACNNNGTG	1 cut(s)	246
EaeI	YGGCCR	1 cut(s)	25
Eam1104I	CTCTTC	2 cut(s)	138, 402
EarI	CTCTTC	2 cut(s)	138, 402
Ecl136II	GAGCTC	2 cut(s)	104, 148
Eco24I	GRGCYC	2 cut(s)	106, 150
Eco47I	GGWCC	1 cut(s)	426
Eco53kI	GAGCTC	2 cut(s)	104, 148
Eco57I	CTGAAG	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	196
EcoICRI	GAGCTC	2 cut(s)	104, 148
EcoNI	CCTNNNNNAGG	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	270
EcoT22I	ATGCAT	1 cut(s)	235
EcoT38I	GRGCYC	2 cut(s)	106, 150
FaeI	CATG	2 cut(s)	283, 383
FaiI	YATR	6 cut(s)	39, 132, 231, 281, 381, 477
FatI	CATG	2 cut(s)	279, 379
FauI	CCCGC	1 cut(s)	80
FokI	GGATG	1 cut(s)	169
FriOI	GRGCYC	2 cut(s)	106, 150
FspBI	CTAG	1 cut(s)	438
GlaI	GCGC	1 cut(s)	470
GsaI	CCCAGC	1 cut(s)	463
GsuI	CTGGAG	1 cut(s)	442
HaeIII	GGCC	1 cut(s)	27
HhaI	GCGC	1 cut(s)	471
Hin1II	CATG	2 cut(s)	283, 383
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HinfI	GANTC	3 cut(s)	137, 194, 464
Hpy188I	TCNGA	3 cut(s)	142, 172, 334
Hpy188III	TCNNGA	1 cut(s)	198
Hpy99I	CGWCG	1 cut(s)	89
HpyCH4V	TGCA	4 cut(s)	33, 233, 279, 362
HpyF3I	CTNAG	1 cut(s)	149
Hsp92II	CATG	2 cut(s)	283, 383
HspAI	GCGC	1 cut(s)	469
Kzo9I	GATC	4 cut(s)	78, 325, 334, 448
LguI	GCTCTTC	1 cut(s)	138
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	6 cut(s)	6, 257, 284, 406, 441, 445
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	1 cut(s)	438
MalI	GATC	4 cut(s)	80, 327, 336, 450
MbiI	CCGCTC	1 cut(s)	431
MboI	GATC	4 cut(s)	78, 325, 334, 448
MboII	GAAGA	7 cut(s)	73, 77, 155, 228, 301, 304, 419
MflI	RGATCY	3 cut(s)	78, 325, 448
MhlI	GDGCHC	3 cut(s)	106, 150, 309
MluCI	AATT	2 cut(s)	356, 388
MlyI	GAGTC	1 cut(s)	188
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	6 cut(s)	53, 184, 269, 340, 407, 417
Mph1103I	ATGCAT	1 cut(s)	235
MseI	TTAA	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	272
MvnI	CGCG	1 cut(s)	469
NdeII	GATC	4 cut(s)	78, 325, 334, 448
NlaIII	CATG	2 cut(s)	283, 383
NlaIV	GGNNCC	1 cut(s)	306
NsiI	ATGCAT	1 cut(s)	235
PaeR7I	CTCGAG	1 cut(s)	196
PciSI	GCTCTTC	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	203
PfeI	GAWTC	2 cut(s)	137, 464
PflFI	GACNNNGTC	1 cut(s)	260
PfoI	TCCNGGA	1 cut(s)	270
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
Psp124BI	GAGCTC	2 cut(s)	106, 150
Psp6I	CCWGG	1 cut(s)	270
PspFI	CCCAGC	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	426
PsrI	GAACNNNNNNTAC	2 cut(s)	29, 61
PsuI	RGATCY	3 cut(s)	78, 325, 448
PsyI	GACNNNGTC	1 cut(s)	260
PvuII	CAGCTG	1 cut(s)	20
SacI	GAGCTC	2 cut(s)	106, 150
SapI	GCTCTTC	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	251
Sau3AI	GATC	4 cut(s)	78, 325, 334, 448
Sau96I	GGNCC	1 cut(s)	426
SchI	GAGTC	1 cut(s)	188
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	3 cut(s)	106, 150, 309
SetI	ASST	8 cut(s)	22, 106, 150, 177, 261, 399, 422, 428
SfaNI	GCATC	1 cut(s)	242
Sfr274I	CTCGAG	1 cut(s)	196
SinI	GGWCC	1 cut(s)	426
SlaI	CTCGAG	1 cut(s)	196
SmlI	CTYRAG	1 cut(s)	196
SmoI	CTYRAG	1 cut(s)	196
Sse9I	AATT	2 cut(s)	356, 388
SsiI	CCGC	3 cut(s)	73, 429, 446
SspMI	CTAG	1 cut(s)	438
SstI	GAGCTC	2 cut(s)	106, 150
StyD4I	CCNGG	1 cut(s)	270
TaqI	TCGA	3 cut(s)	197, 206, 399
TaqII	GACCGA	1 cut(s)	77
TasI	AATT	2 cut(s)	356, 388
TfiI	GAWTC	2 cut(s)	137, 464
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	37
Tth111I	GACNNNGTC	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	426
XagI	CCTNNNNNAGG	1 cut(s)	401
XapI	RAATTY	2 cut(s)	356, 388
XhoI	CTCGAG	1 cut(s)	196
XspI	CTAG	1 cut(s)	438
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.